CmoCh07G009670 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G009670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S3
LocationCmo_Chr07: 4732381 .. 4733431 (+)
RNA-Seq ExpressionCmoCh07G009670
SyntenyCmoCh07G009670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCCCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGAGTTTAGTGAGAGTGAATCAAAACAATTGTCCAAGATTGCGTCATCGAGCACGCGACGCGCATAGTCTGAAGGGTTGTCTCCTCTTCAACATTTCGACTACTACTTACTTGCCTTCCCTTTTCAGAGATCTCCTTGTTCTCTTCCCAGATTTGACTCGATTTCATTAGTTCATAAGAATCAGTACCAAAGGAATGAATCAAAGATAGAAAGAAAAAGGCTATCCATCCTCAGCCGTATAGGGAAGAGAGGGAAAACTGTCTTTCTTTGTCGGAAATGATGATGCGTATGTAACTCCACAGTAAGAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAATTAATGAACAGGGAATGGATGAATAATAGTATCCATATAACTTTACATAGAACTTATGTTTGATATAAATATTAGTAGTGTAGATGTAGAGAGGTAACGAATGAAGTGAGTTACCACCGGAGGCAAGGGTAGGCGGAAGACAGGGGGTTTGTAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTAAAGGGATGTGCATAAAAAGGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

mRNA sequence

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

Coding sequence (CDS)

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

Protein sequence

MNESEQEGNHRAKRKKKIFLSLRESQFVIERRNLLSTIDDRERINLFRTTDGLVSKQPVMSVFARENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Homology
[Close]
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match: P27754 (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAGV
Sbjct: 137 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGV 186

[Close]
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match: Q04716 (Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAG+
Sbjct: 136 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGI 185

[Close]
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match: P46773 (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDRSPSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match: P27928 (Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDR+PSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match: P49386 (Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR+PS KKNLSKSLR+SGAFKHPKY GV
Sbjct: 136 DDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGV 185

[Close]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match: E5DM03 (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match: D5I3F1 (Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match: M9WG71 (Ribosomal protein S3 OS=Liriodendron tulipifera OX=3415 GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

[Close]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match: E5DMG0 (Ribosomal protein S3 (Fragment) OS=Roupala macrophylla OX=83738 GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 83  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 132

[Close]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match: E5DMH1 (Ribosomal protein S3 (Fragment) OS=Saururus cernuus OX=13260 GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 73  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 122

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: ADL63821.1 (ribosomal protein S3, partial [Cucurbita pepo])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: YP_003587365.1 (ribosomal protein S3 [Cucurbita pepo] >ACV96695.1 ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: ADL63882.1 (ribosomal protein S3, partial [Hypecoum imberbe])

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 80  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 129

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: ADL63981.1 (ribosomal protein S3, partial [Sabia sp. Qiu 91025])

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 68  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 117

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: XP_042504764.1 (LOW QUALITY PROTEIN: ribosomal protein S3, mitochondrial-like [Macadamia integrifolia])

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 137 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 186

[Close]
BLAST of CmoCh07G009670 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR PS KKNLSKSLR+SGAFKHPKYAGV
Sbjct: 138 DDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGV 187

The following BLAST results are available for this feature:
BLAST of CmoCh07G009670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P277542.2e-2096.00Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3... [more]
Q047162.9e-2094.00Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=... [more]
P467731.1e-1990.38Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
P279282.5e-1988.46Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1[more]
P493866.1e-1886.00Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1[more]
BLAST of CmoCh07G009670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5DM031.5e-19100.00Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1[more]
D5I3F17.5e-1998.00Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1[more]
M9WG711.3e-1898.00Ribosomal protein S3 OS=Liriodendron tulipifera OX=3415 GN=rps3 PE=3 SV=1[more]
E5DMG01.3e-1898.00Ribosomal protein S3 (Fragment) OS=Roupala macrophylla OX=83738 GN=rps3 PE=3 SV=... [more]
E5DMH11.3e-1898.00Ribosomal protein S3 (Fragment) OS=Saururus cernuus OX=13260 GN=rps3 PE=3 SV=1[more]
BLAST of CmoCh07G009670 vs. NCBI nr
Match NameE-valueIdentityDescription
ADL63821.13.1e-19100.00ribosomal protein S3, partial [Cucurbita pepo][more]
YP_003587365.11.5e-1898.00ribosomal protein S3 [Cucurbita pepo] >ACV96695.1 ribosomal protein S3 [Cucurbit... [more]
ADL63882.12.6e-1898.00ribosomal protein S3, partial [Hypecoum imberbe][more]
ADL63981.12.6e-1898.00ribosomal protein S3, partial [Sabia sp. Qiu 91025][more]
XP_042504764.12.6e-1898.00LOW QUALITY PROTEIN: ribosomal protein S3, mitochondrial-like [Macadamia integri... [more]
BLAST of CmoCh07G009670 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00090.13.3e-1988.00structural constituent of ribosome;protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..97
IPR044954Ribosomal protein S3, mitochondrial, plantPANTHERPTHR35928RIBOSOMAL PROTEIN S3, MITOCHONDRIALcoord: 66..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G009670.1CmoCh07G009670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome