CmoCh07G009400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G009400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA polymerase sigma factor sigF
Location	Cmo_Chr07: 4505958 .. 4507247 (-)
RNA-Seq Expression	CmoCh07G009400
Synteny	CmoCh07G009400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTCTCTGGAGGAGAAACTACCATTACTTGAGTAGTTGTGACGAGAAGATAGTTATGAACGATTATGATTCCGATGCGATTAGGTGGGGTCTTCGTCTTTTCAATGGGGACTCATCCTATAGTACCGAGTACTTTCATGACACAGCACAACATGATGTTAATTTCTATGACCATTATCATGGAAATCGTTGCAATAATGAAGTTAACCACGTGGAGAACGATGAGATTATTGCACACACTCTTCAGGAGGAGTTTACCCAATTAGAAATCGCAGCTGTTCAAATGCAGAAGAGCCCTCCCAAACATCTAATTTTGCGCTGGGTTGGAACAATCAGTCCTCAAGAAACTACAGTTCAGGCTGTTACAATACTAACCACCTTATTCTTCTTTCCGTATACATGTGTGATAATGATCCTTACAAGTGCGGACAATTCTTTTTTTTTTTTTTACAATCTGCAGAAAATGAGTCGGTTGAAGATGAAGTTGAAACTATGGAGCCTTCTAGTTCATGTTCTAGTCCAAGTCATGAAGATAATTACTATCTATACGGGCATGAGAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCGCCTGTGAGATTTTCTATAGTTACATTTTTTTTTATTTTGGTGTAGTAGTTGAAATAAATTATAGATTCATTATGATGAAAATATTCCCTCTTAAGAGCGACCAATGTATGTCAGACTTTGTATGGAGCATGCTTCTTTGCAGGGACTTGTGACTGCTGACATCTAGGAATACTTTATATCTGGTTAGAATTTGGAATTGTTCTCCTCTTGATTGGGAAATATTTTGTTATGATTTCCGTAGGTGCTTCTCTTTTTTCTTTTTGGGAATTAGTTTGGAATATTTTGAACTATTCTTACATCATTCGTGCATGTGTGTTGTCAGTCTGAAATGGGCACTGGAATAAACATTTGGTAGACGTTTTCTCTGTGAACCATCGACATGATCATTCCCGCTATTACTGATTCTTGATTCCCAGCATGCTGACTTATGGTTTTCACTATTCATTTAATTGTTTGGACGAGAACCAAGGAATCTTGTCAAACAATATGCTTTCAAAGACTGATCTCTAGTTCTTTTCCAATCTGTGCTAACATATGTATGTGGCATGGTATTATCCATAGCTTTGTCTGTCTACTACAAAGTTGACTTAAAACTTCTCATGTGATTGTGCAGCATGTCCCAAGAACTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTAA

mRNA sequence

CTACTTCTCTGGAGGAGAAACTACCATTACTTGAGTAGTTGTGACGAGAAGATAGTTATGAACGATTATGATTCCGATGCGATTAGGTGGGGTCTTCGTCTTTTCAATGGGGACTCATCCTATAGTACCGAGTACTTTCATGACACAGCACAACATGATGTTAATTTCTATGACCATTATCATGGAAATCGTTGCAATAATGAAGTTAACCACGTGGAGAACGATGAGATTATTGCACACACTCTTCAGGAGGAGTTTACCCAATTAGAAATCGCAGCTGTTCAAATGCAGAAGAGCCCTCCCAAACATCTAATTTTGCGCTGGGTTGGAACAATCAGTCCTCAAGAAACTACAGTTCAGGCTGTTACAATACTAACCACCTTATTCTTCTTTCCGTATACATGTGTGATAATGATCCTTACAAAAAATGAGTCGGTTGAAGATGAAGTTGAAACTATGGAGCCTTCTAGTTCATGTTCTAGTCCAAGTCATGAAGATAATTACTATCTATACGGGCATGAGAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCGCCTCATGTCCCAAGAACTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTAA

Coding sequence (CDS)

CTACTTCTCTGGAGGAGAAACTACCATTACTTGAGTAGTTGTGACGAGAAGATAGTTATGAACGATTATGATTCCGATGCGATTAGGTGGGGTCTTCGTCTTTTCAATGGGGACTCATCCTATAGTACCGAGTACTTTCATGACACAGCACAACATGATGTTAATTTCTATGACCATTATCATGGAAATCGTTGCAATAATGAAGTTAACCACGTGGAGAACGATGAGATTATTGCACACACTCTTCAGGAGGAGTTTACCCAATTAGAAATCGCAGCTGTTCAAATGCAGAAGAGCCCTCCCAAACATCTAATTTTGCGCTGGGTTGGAACAATCAGTCCTCAAGAAACTACAGTTCAGGCTGTTACAATACTAACCACCTTATTCTTCTTTCCGTATACATGTGTGATAATGATCCTTACAAAAAATGAGTCGGTTGAAGATGAAGTTGAAACTATGGAGCCTTCTAGTTCATGTTCTAGTCCAAGTCATGAAGATAATTACTATCTATACGGGCATGAGAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCGCCTCATGTCCCAAGAACTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTAA

Protein sequence

LLLWRRNYHYLSSCDEKIVMNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIAHTLQEEFTQLEIAAVQMQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR

Homology

[Close]

BLAST of CmoCh07G009400 vs. ExPASy Swiss-Prot
Match: Q9LZF7 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thaliana OX=3702 GN=OTU10 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 0


Query: 30  WGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIAHTLQEEFTQL 89
           +G+ + + D   +  + H   Q    +Y  Y  +R ++    V+NDEIIA TLQ++F QL
Sbjct: 25  YGIEMIHEDDEVAVAHHHHHHQSG-EYYREYEDHRSSD----VDNDEIIARTLQDDFLQL 84

Query: 90  EIAA---VQMQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTCVIMILTKNESV 149
           EIA       Q    +H    +    S       A    +    +    +     ++   
Sbjct: 85  EIAESNDYSHQNQQQQHQQEGYTNNYS-NNNNGYAWNDQSPAVDYSSEWIGNDNDQDGRS 144

Query: 150 EDEVETMEPSSSCSSPSHEDNYYLYGHENQVD------WKMDQMIPAPHVPRTNGEIPPI 209
           +D V       SCSSPS  D Y      +Q D       +++QM+P P++P+ NGEIPP 
Sbjct: 145 DDSVNVF----SCSSPSDTDEYVYSWESDQCDADGEFGRRLNQMVPIPYIPKINGEIPPE 204

Query: 210 DEVTSDHQRLLDR 214
           +E  SDH+RL +R
Sbjct: 205 EEAVSDHERLRNR 207

[Close]

BLAST of CmoCh07G009400 vs. ExPASy Swiss-Prot
Match: Q8LBW2 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thaliana OX=3702 GN=OTU9 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-06
Identity = 55/204 (26.96%), Postives = 84/204 (41.18%), Query Frame = 0


Query: 24  DSDAIRWGLR------LFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEI 83
           D DA+RWGL       L N  S  S   +         +    +         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 84  IAHTLQEEFTQLEIAAVQ--MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTC 143
           IA   Q+E +++  A        SP   +   W      QE   +A+ I           
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHPHQGQENQGEAIDITQE-------- 125

Query: 144 VIMILTKNESVEDE-VETMEPSSSCSSPSHEDNYYLYGHENQVDW-----KMDQMIPAPH 203
             ++   N ++ED+ V  +      SSPS +D+        +  W     +++QMIP  H
Sbjct: 126 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAH 185

Query: 204 VPRTNGEIPPIDEVTSDHQRLLDR 214
           VP+ NGE+P  DE  SDH+RL  R
Sbjct: 186 VPKINGELPSEDEQISDHERLFQR 198

[Close]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL
Match: A0A6J1I6F5 (uncharacterized protein LOC111471149 OS=Cucurbita maxima OX=3661 GN=LOC111471149 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.6e-80
Identity = 157/218 (72.02%), Postives = 165/218 (75.69%), Query Frame = 0


Query: 1   LLLWRRNYHYLSSCDEKIVMNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHY 60
           LLLWRRNYHYLSSCDEKIVMNDY+SDA RWGLR FNGDSSYSTEYFHD AQHDVNFYD+Y
Sbjct: 41  LLLWRRNYHYLSSCDEKIVMNDYNSDASRWGLRFFNGDSSYSTEYFHDMAQHDVNFYDYY 100

Query: 61  HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIAAVQ-----MQKSPPKHLILRWVGTISPQ 120
           HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIA         +     +  L W    S  
Sbjct: 101 HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIAEASGCSNAEEPCQTSNFALGWNNLSSRN 160

Query: 121 ETTVQAVTILTTLFFFPYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHEN 180
            +                       ++N+SVEDEVETMEPSSSCSSP HEDNY  YGHEN
Sbjct: 161 YS-----------------------SENDSVEDEVETMEPSSSCSSPGHEDNYCPYGHEN 220

Query: 181 QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 214
           QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR
Sbjct: 221 QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 235

[Close]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL
Match: A0A0A0KIE6 (OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.6e-62
Identity = 133/213 (62.44%), Postives = 147/213 (69.01%), Query Frame = 0


Query: 11  LSSCDEKIVMNDYDSDAIRWGLRLFNGDSS--------YSTEYFHDTAQHDVNFYDHYHG 70
           L SC EK+VMNDYDSDAIRWGLR FNGDS+        YSTEY  DTAQHDVNFY+HY+G
Sbjct: 27  LCSCYEKMVMNDYDSDAIRWGLRFFNGDSNGDSNGDMPYSTEYLPDTAQHDVNFYEHYYG 86

Query: 71  NRCNNEVNHVENDEIIAHTLQEEFTQLEIAAVQ--MQKSPPKHLILRWVGTISPQETTVQ 130
           N  NNEVN+VENDEIIAHTLQEEF+QLEIA          P       +G  +P      
Sbjct: 87  NNYNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSQASKFALGWNNPSSRNYS 146

Query: 131 AVTILTTLFFFPYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWK 190
                               ++N+SVEDEVET+EPSSSCSSP   DNYY YGH+NQVDW+
Sbjct: 147 --------------------SENDSVEDEVETVEPSSSCSSPGQGDNYYPYGHDNQVDWR 206

Query: 191 MDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 214
           MDQMIPAPHVPR NGEIP IDEVTSDHQRLLDR
Sbjct: 207 MDQMIPAPHVPRINGEIPSIDEVTSDHQRLLDR 219

[Close]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL
Match: A0A6J1IP18 (RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478657 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.4e-60
Identity = 125/198 (63.13%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 18  IVMNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEI 77
           +VMNDYDSDAI WGLRLFNGDSSYS+EYF D AQHDVNFY+HY+GN CNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 78  IAHTLQEEFTQLEIAAVQMQKS--PPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTC 137
           IAHTLQEEF+QLEIA      +   P       +G  +P                     
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYALGWDNPSSRNYG--------------- 120

Query: 138 VIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTNG 197
                ++N+S+ED VET+E SSSCSSP  ED+YY +GH++QVDWKMDQ+IPAPHVPR NG
Sbjct: 121 -----SENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRING 178

Query: 198 EIPPIDEVTSDHQRLLDR 214
           EIP IDEVTSDHQRLLDR
Sbjct: 181 EIPSIDEVTSDHQRLLDR 178

[Close]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL
Match: A0A6J1EDW3 (RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433307 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.4e-60
Identity = 125/198 (63.13%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 18  IVMNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEI 77
           +VMNDYDSDAI WGLRLFNGDSSYS+EYF D AQHDVNFY+HY+GN CNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 78  IAHTLQEEFTQLEIAAVQMQKS--PPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTC 137
           IAHTLQEEF+QLEIA      +   P       +G  +P                     
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYG--------------- 120

Query: 138 VIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTNG 197
                ++N+S+ED VET+E SSSCSSP  ED+YY +GH++QVDWKMDQ+IPAPHVPR NG
Sbjct: 121 -----SENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRING 178

Query: 198 EIPPIDEVTSDHQRLLDR 214
           EIP IDEVTSDHQRLLDR
Sbjct: 181 EIPSIDEVTSDHQRLLDR 178

[Close]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 3.2e-60
Identity = 129/202 (63.86%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 18  IVMNDYDSDAIRWGLRLFNGDSS----YSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVE 77
           +VMNDYDSDAIRWGLR FNGD +    YSTEY   TAQ DVNFY+HY+GN CNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 78  NDEIIAHTLQEEFTQLEIAAVQ--MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFF 137
           NDEIIAHTLQEEF+QLEIA          P H     +G  +P                 
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKY------------ 120

Query: 138 PYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVP 197
                     KN+SVEDEVET+EPSSSCSSP  EDNYY YGH+NQVDW+MDQMIPAPHVP
Sbjct: 121 ----------KNDSVEDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVP 180

Query: 198 RTNGEIPPIDEVTSDHQRLLDR 214
           R NGEIP IDEVTSDHQRLLDR
Sbjct: 181 RINGEIPSIDEVTSDHQRLLDR 180

[Close]

BLAST of CmoCh07G009400 vs. NCBI nr
Match: XP_022972611.1 (uncharacterized protein LOC111471149 [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 3.4e-80
Identity = 157/218 (72.02%), Postives = 165/218 (75.69%), Query Frame = 0


Query: 1   LLLWRRNYHYLSSCDEKIVMNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHY 60
           LLLWRRNYHYLSSCDEKIVMNDY+SDA RWGLR FNGDSSYSTEYFHD AQHDVNFYD+Y
Sbjct: 41  LLLWRRNYHYLSSCDEKIVMNDYNSDASRWGLRFFNGDSSYSTEYFHDMAQHDVNFYDYY 100

Query: 61  HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIAAVQ-----MQKSPPKHLILRWVGTISPQ 120
           HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIA         +     +  L W    S  
Sbjct: 101 HGNRCNNEVNHVENDEIIAHTLQEEFTQLEIAEASGCSNAEEPCQTSNFALGWNNLSSRN 160

Query: 121 ETTVQAVTILTTLFFFPYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHEN 180
            +                       ++N+SVEDEVETMEPSSSCSSP HEDNY  YGHEN
Sbjct: 161 YS-----------------------SENDSVEDEVETMEPSSSCSSPGHEDNYCPYGHEN 220

Query: 181 QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 214
           QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR
Sbjct: 221 QVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 235

[Close]

BLAST of CmoCh07G009400 vs. NCBI nr
Match: KAG7027255.1 (OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 3.1e-73
Identity = 146/199 (73.37%), Postives = 152/199 (76.38%), Query Frame = 0


Query: 20  MNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIA 79
           MNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIA
Sbjct: 1   MNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIA 60

Query: 80  HTLQEEFTQLEIAAVQ-----MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYT 139
           HTLQEEFTQLEIA         +     +  L W    S   +                 
Sbjct: 61  HTLQEEFTQLEIAEASGCSNAEEPYQTSNFALGWNNQSSRNYS----------------- 120

Query: 140 CVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTN 199
                 ++NESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTN
Sbjct: 121 ------SENESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTN 176

Query: 200 GEIPPIDEVTSDHQRLLDR 214
           GEIPP+DEVTSDHQRLLDR
Sbjct: 181 GEIPPLDEVTSDHQRLLDR 176

[Close]

BLAST of CmoCh07G009400 vs. NCBI nr
Match: KAG6595233.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 9.8e-72
Identity = 144/199 (72.36%), Postives = 150/199 (75.38%), Query Frame = 0


Query: 20  MNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIA 79
           MNDYDSDAIRWGLRLFNGDSSYSTEYFHD AQHDVNFYDHYHGNRCNNEVNHVENDEIIA
Sbjct: 1   MNDYDSDAIRWGLRLFNGDSSYSTEYFHDMAQHDVNFYDHYHGNRCNNEVNHVENDEIIA 60

Query: 80  HTLQEEFTQLEIAAVQ-----MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYT 139
           HTLQEEFTQLEIA         +     +  L W    S   +                 
Sbjct: 61  HTLQEEFTQLEIAEASGCSNAEEPYQTSNFALGWNNQSSRNYS----------------- 120

Query: 140 CVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTN 199
                 ++NESVEDEVETMEPSSSCSSPSHEDNYY YGHENQVDWKMDQMIPAPHVPRTN
Sbjct: 121 ------SENESVEDEVETMEPSSSCSSPSHEDNYYPYGHENQVDWKMDQMIPAPHVPRTN 176

Query: 200 GEIPPIDEVTSDHQRLLDR 214
           GEIPP+DEVTSDHQRLLDR
Sbjct: 181 GEIPPLDEVTSDHQRLLDR 176

[Close]

BLAST of CmoCh07G009400 vs. NCBI nr
Match: XP_023518601.1 (uncharacterized protein LOC111782058 [Cucurbita pepo subsp. pepo] >XP_023518603.1 uncharacterized protein LOC111782058 [Cucurbita pepo subsp. pepo] >XP_023518604.1 uncharacterized protein LOC111782058 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-69
Identity = 144/194 (74.23%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 20  MNDYDSDAIRWGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIA 79
           MNDYDSDAIRWGLRLFNGDSSYSTEYFHD AQHDVNF DHYHGNRCNNEVNHVENDEIIA
Sbjct: 1   MNDYDSDAIRWGLRLFNGDSSYSTEYFHDMAQHDVNFDDHYHGNRCNNEVNHVENDEIIA 60

Query: 80  HTLQEEFTQLEIAAVQMQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTCVIMI 139
           HTLQEEFTQLEIA                 G  + +E +       T+ F   +      
Sbjct: 61  HTLQEEFTQLEIAEAS--------------GCSNAEEPS------QTSNFALGWNNRSSR 120

Query: 140 LTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHVPRTNGEIPP 199
             KNESVEDEVETMEPSSSCSSPSHEDNY+ YGHEN VDWKMDQMIPAPHVPRTNGEIPP
Sbjct: 121 NYKNESVEDEVETMEPSSSCSSPSHEDNYFPYGHENLVDWKMDQMIPAPHVPRTNGEIPP 174

Query: 200 IDEVTSDHQRLLDR 214
           IDEVTSDHQRLLDR
Sbjct: 181 IDEVTSDHQRLLDR 174

[Close]

BLAST of CmoCh07G009400 vs. NCBI nr
Match: XP_038882898.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X2 [Benincasa hispida])

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-60
Identity = 130/203 (64.04%), Postives = 140/203 (68.97%), Query Frame = 0


Query: 20  MNDYDSDAIRWGLRLFNGDS----SYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVEND 79
           MNDYDSDAIRWGLR FNGDS    SYSTEYF D AQHDVNFY+HY+GN  NNEVNHVEND
Sbjct: 1   MNDYDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHSNNEVNHVEND 60

Query: 80  EIIAHTLQEEFTQLEIAAVQ-----MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFF 139
           EIIA TLQEEF+QLE+A           S      L W    S   T             
Sbjct: 61  EIIARTLQEEFSQLEMAEASGYSNVEDPSQASKFALGWNNPSSRNYT------------- 120

Query: 140 FPYTCVIMILTKNESVEDEVETMEPSSSCSSPSHEDNYYLYGHENQVDWKMDQMIPAPHV 199
                     ++N+SVEDE+ET+EPSSSCSSP  EDNYY  GH+NQVDWKMDQMIPAPHV
Sbjct: 121 ----------SENDSVEDEIETVEPSSSCSSPGQEDNYYPNGHDNQVDWKMDQMIPAPHV 180

Query: 200 PRTNGEIPPIDEVTSDHQRLLDR 214
           PR NGEIPPIDEVTSDHQRLLDR
Sbjct: 181 PRINGEIPPIDEVTSDHQRLLDR 180

[Close]

BLAST of CmoCh07G009400 vs. TAIR 10
Match: AT5G03330.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 0


Query: 30  WGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIAHTLQEEFTQL 89
           +G+ + + D   +  + H   Q    +Y  Y  +R ++    V+NDEIIA TLQ++F QL
Sbjct: 25  YGIEMIHEDDEVAVAHHHHHHQSG-EYYREYEDHRSSD----VDNDEIIARTLQDDFLQL 84

Query: 90  EIAA---VQMQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTCVIMILTKNESV 149
           EIA       Q    +H    +    S       A    +    +    +     ++   
Sbjct: 85  EIAESNDYSHQNQQQQHQQEGYTNNYS-NNNNGYAWNDQSPAVDYSSEWIGNDNDQDGRS 144

Query: 150 EDEVETMEPSSSCSSPSHEDNYYLYGHENQVD------WKMDQMIPAPHVPRTNGEIPPI 209
           +D V       SCSSPS  D Y      +Q D       +++QM+P P++P+ NGEIPP 
Sbjct: 145 DDSVNVF----SCSSPSDTDEYVYSWESDQCDADGEFGRRLNQMVPIPYIPKINGEIPPE 204

Query: 210 DEVTSDHQRLLDR 214
           +E  SDH+RL +R
Sbjct: 205 EEAVSDHERLRNR 207

[Close]

BLAST of CmoCh07G009400 vs. TAIR 10
Match: AT5G03330.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 0


Query: 30  WGLRLFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEIIAHTLQEEFTQL 89
           +G+ + + D   +  + H   Q    +Y  Y  +R ++    V+NDEIIA TLQ++F QL
Sbjct: 25  YGIEMIHEDDEVAVAHHHHHHQSG-EYYREYEDHRSSD----VDNDEIIARTLQDDFLQL 84

Query: 90  EIAA---VQMQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTCVIMILTKNESV 149
           EIA       Q    +H    +    S       A    +    +    +     ++   
Sbjct: 85  EIAESNDYSHQNQQQQHQQEGYTNNYS-NNNNGYAWNDQSPAVDYSSEWIGNDNDQDGRS 144

Query: 150 EDEVETMEPSSSCSSPSHEDNYYLYGHENQVD------WKMDQMIPAPHVPRTNGEIPPI 209
           +D V       SCSSPS  D Y      +Q D       +++QM+P P++P+ NGEIPP 
Sbjct: 145 DDSVNVF----SCSSPSDTDEYVYSWESDQCDADGEFGRRLNQMVPIPYIPKINGEIPPE 204

Query: 210 DEVTSDHQRLLDR 214
           +E  SDH+RL +R
Sbjct: 205 EEAVSDHERLRNR 207

[Close]

BLAST of CmoCh07G009400 vs. TAIR 10
Match: AT5G04250.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-07
Identity = 55/204 (26.96%), Postives = 84/204 (41.18%), Query Frame = 0


Query: 24  DSDAIRWGLR------LFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEI 83
           D DA+RWGL       L N  S  S   +         +    +         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 84  IAHTLQEEFTQLEIAAVQ--MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTC 143
           IA   Q+E +++  A        SP   +   W      QE   +A+ I           
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHPHQGQENQGEAIDITQE-------- 125

Query: 144 VIMILTKNESVEDE-VETMEPSSSCSSPSHEDNYYLYGHENQVDW-----KMDQMIPAPH 203
             ++   N ++ED+ V  +      SSPS +D+        +  W     +++QMIP  H
Sbjct: 126 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAH 185

Query: 204 VPRTNGEIPPIDEVTSDHQRLLDR 214
           VP+ NGE+P  DE  SDH+RL  R
Sbjct: 186 VPKINGELPSEDEQISDHERLFQR 198

[Close]

BLAST of CmoCh07G009400 vs. TAIR 10
Match: AT5G04250.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-07
Identity = 55/204 (26.96%), Postives = 84/204 (41.18%), Query Frame = 0


Query: 24  DSDAIRWGLR------LFNGDSSYSTEYFHDTAQHDVNFYDHYHGNRCNNEVNHVENDEI 83
           D DA+RWGL       L N  S  S   +         +    +         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 84  IAHTLQEEFTQLEIAAVQ--MQKSPPKHLILRWVGTISPQETTVQAVTILTTLFFFPYTC 143
           IA   Q+E +++  A        SP   +   W      QE   +A+ I           
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHPHQGQENQGEAIDITQE-------- 125

Query: 144 VIMILTKNESVEDE-VETMEPSSSCSSPSHEDNYYLYGHENQVDW-----KMDQMIPAPH 203
             ++   N ++ED+ V  +      SSPS +D+        +  W     +++QMIP  H
Sbjct: 126 SDILHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAH 185

Query: 204 VPRTNGEIPPIDEVTSDHQRLLDR 214
           VP+ NGE+P  DE  SDH+RL  R
Sbjct: 186 VPKINGELPSEDEQISDHERLFQR 198

[Close]

BLAST of CmoCh07G009400 vs. TAIR 10
Match: AT3G02070.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.5e-04
Identity = 18/40 (45.00%), Postives = 25/40 (62.50%), Query Frame = 0


Query: 174 ENQVDWKMDQMIPAPHVPRTNGEIPPIDEVTSDHQRLLDR 214
           +  V  ++  + P PHVPR N  IP +++ T DHQRLL R
Sbjct: 34  DGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQR 73

The following BLAST results are available for this feature:

BLAST of CmoCh07G009400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZF7	5.0e-10	29.53	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thalia...	[more]
Q8LBW2	4.4e-06	26.96	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thalian...	[more]

BLAST of CmoCh07G009400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6F5	1.6e-80	72.02	uncharacterized protein LOC111471149 OS=Cucurbita maxima OX=3661 GN=LOC111471149...	[more]
A0A0A0KIE6	2.6e-62	62.44	OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV...	[more]
A0A6J1IP18	2.4e-60	63.13	RNA polymerase sigma factor sigF, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EDW3	2.4e-60	63.13	RNA polymerase sigma factor sigF, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A1S4E4I4	3.2e-60	63.86	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of CmoCh07G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972611.1	3.4e-80	72.02	uncharacterized protein LOC111471149 [Cucurbita maxima]	[more]
KAG7027255.1	3.1e-73	73.37	OTU domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6595233.1	9.8e-72	72.36	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10, partial [Cucurbita a...	[more]
XP_023518601.1	1.6e-69	74.23	uncharacterized protein LOC111782058 [Cucurbita pepo subsp. pepo] >XP_023518603....	[more]
XP_038882898.1	3.0e-60	64.04	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X2 [Beni...	[more]

BLAST of CmoCh07G009400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03330.1	3.5e-11	29.53	Cysteine proteinases superfamily protein	[more]
AT5G03330.2	3.5e-11	29.53	Cysteine proteinases superfamily protein	[more]
AT5G04250.1	3.1e-07	26.96	Cysteine proteinases superfamily protein	[more]
AT5G04250.2	3.1e-07	26.96	Cysteine proteinases superfamily protein	[more]
AT3G02070.1	5.5e-04	45.00	Cysteine proteinases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..213
None	No IPR available	PANTHER	PTHR12419:SF78	OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757-LIKE ISOFORM X1	coord: 40..213
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 40..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G009400.1	CmoCh07G009400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity