CmoCh07G008350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G008350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cmo_Chr07: 3913276 .. 3917801 (+)
RNA-Seq Expression	CmoCh07G008350
Synteny	CmoCh07G008350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTTCCGGGCGGTTGACGAGTCGGGCTTTGAGAAGATTGTCAGGGCAACTATTTCAAAAGAAGCGTCGGACACTTTAGAAAAGGTGTTCAAAGGAACTGACCGAGTCAAGCAAGTGCTTCTCCAAACTCTGTGTGGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAGAAAATGTATCTGACCACATTGCGCACATACAGACCGTGGCAAATCAATTAAATCGAAACGGAGAAATGTTACCCGAGACGCGAGTTGTGGAGAAGATCTTGAGGTCGTTAACCGACAACTTCGAGAATGTTGTATGTGCGACAGAAGAGTCAAAGGACCTAGCGAAGTTCACAGTCAATGAGCTTGCCGGTTCTCTTAAGGCACACGAGCAACGTAAGAAAAAGAAGGAGGAGACACTCGATCAAGCGCTTCAGATTAAGGCATCAATAAAGGATGAAAAGGTACTCTACTCTCAAAATGTTTAAGCTAGAGGTCATGGAAGTTGTGGAAATGGTCGAGGTGGTCAAGGTAACAGTTATGAATAAAATTATGAGAAGCTACTATCGAAACAAGCAAATTGGCGTGGAAGAGGATGTAGTCGAGGAAGAGGCGACCAATCAAACATTCAGTGTTATAAATGTCAAAAATATGAAGTCTCATCAGAAAAGGACAAGCTGAGTTTGTCGCTCGAAAACAAGAAGAGGAAATTGAAGAAACCACTAGTGAGCTTGACAAAACAAAAACGGCGCATGTAGAATCATTGAATATAGCATTTAAATTTATGGGAGAGTTGTGTTGAAATAAGAGTTTTTGTTGGAATAAACTTAGTTGGGGAAAGATAGTTTTAATTTTTGTTAAGTTATGATTTTTTGAAATTGAATAGTTGAAAAAAAGCAAAAGAGAAAATGAAAGAATAATAACTATTTCAAGAACCGCAAGAACTGTATGAGAAATTGTGGTTTAGAAAATGATGGCATATGTAAATGTATAAATTAGTTTGTTTTCCATAGTAAAAAGTAGAGTGTCTCCTTGTCTCTCCCCTCTCGACATCTAGATTCATGAGTGTTATTTTAACAAATTAATATTAGAACGAGTTTTTTTGTTGAGATATAATATTTAGAGTATATATTATTTATGGAATATATCTTAGATATTATATTTTAATATTATTTGTTTTTTTATTTACAGTATATTTTATTTTATTCTCAATATTTAATTATTTTATATTTTTCTCATTTGTAGGCATTAATTGCTAGCTTGTATCCTATTTAAGCTTATGAATATCAATAAGAATATACAACTTCGATCTATTTCTATTTCTCATTCTTAACATGGTATTAGAGCACCGATCTTGGTATTCTTATATATCAAAATTTTCTCTATGGCGGAATCAGCCAAATCCAACTTCAAATTTTCGAATGTTGATTTAACACATTTTTATTATATTCATCACTCTAATCAGCTAGGATATTCACTTCGTTCCAATCAAATTAAATGGAACAAATTATCAATCCTCAAGTAAATCAGTTATGCATGCTCTTGTTGTCAAAAAGAAAATTGTCTTCATTGATGACACAATTGAAGAAATGTCTCAAGATGCAAATTCAAACGAATTTGAATTATGGAATCAGTGCAACAGTATGATAATATCTTGGTTAACTCATTTAGTTGAAGCAGATATCGCTGAAGGTATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCACGATCAATTCTCATAAAAGAATGCTCCAGCAAGTTTTCAGATACAAAAGACTATAGCAATGATGTCACAAGGAACCATGACGCTGTCAGTATATTTCACCAAACTCAAAGCACTCTGGGATGAATTGGAAGCATACCACACACCACTTACCTGTAATCAACGTCAAATACATGTTGATTAACGCGAAGAAGACAAGTTGATGCAACTACTCATGGGGCTCAATGAGTCTATAGTGAGATCTAACATATTGATGATGACTCCATTACCTAATGTGAGGCAAGCCTATTCATTACTTGTATAAGAAGAGATGCAGCGTCAGGTAACTTCTGAACCTACTAAGAATTTCTTGATTACATCAGCAGTGCAAAAGAAAACAACATATTCAAAGTTCGCCAAGGATAAATCATGTGAACACTGCAATAAAAGTGGTCATACAAGTGATGAGTGTCGATTCCTTAAGTTTCACTGTAAATTTTGCGATAGAATGGGACATACAGAAGATCGATGTCAACAGAAAAATAATTCTAGAAGAGCAGTACAAATCAATCAACGCAACAATCGAGGTATCGATCATCTGCAAATATGGCCGATGTTTCTCAGTTGAATACAGAAGAACAGTCACCAAATTTCATCCCAAATTTTTCTTATGATCAATTACAACATATTGTACAAGACTTATCTGCACTCAATCATCGTTCTTTTGGTAATTCTGATAATAACATCAATGTTGCAGGTTTGTTTCCAGTATCTGCATTATCTATTAACTCTATGAGTTCTAATCTATGGATTCTCGAAAGTGGAGCTACAGATCATATAGTATCCAAAGCTTCTGTTATGACTGAACCAAAGGCTACCACCATATCTACAATAAATTTGCCAAATGGAGGGACAGCACATGTGTCACATACTGACAATGTTTCTTTTAATCCTAACCTTAAATTAAACAATGTTTTATGTGTGCATTCATTCAATTTAAACCTAATGTTCATCAGCAAACTTACCAATGACTTGAAATGTTATGTGACTTTTTATCCTGATTCTTGTGTTATGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTCGGAGGTCTCTATCATATTTCTTTATCTTCTATCAAATCTTCAGCAAATCAAGTATCTCAGTCATCTCATTTGTGGCATTTACGCCTAGGTCATTCTTCTTCTTCTCGTTTTAAATTTCTAGCTCATCAATTGCATCTTAATAATGTTACTCTTTCTCATGATTGTAGTATTTGCTCATTAGCAAAACAAACTAGGTTGTCTTTTCAAAAATTCAATAACAACCCATTCTCCCTATGATATGCTACATTGTGATGTTTGAGGACCACATAAAATTCCAACCCATTCTGGTTTGCGGTTTTTTTCTCACTGTTGTTGATGATTTTACTCAATGTACTTGAGTTTTTCTTATGCAACACAAATCAGAAGTACACCATTTGTTAGTAAACTTTGTTAAATTCGTTCAAACTCAATTTCATGCAACTATCAAGATAGTTAGGTCAGACAATGGGAATGAGTTCCTATCTTTGCAACCATTTTTTACTTCTCGTGGCATTGAATTTCAGCGCACTTGTGTCTATACTCCACAACAAAATGGAGTCGTAGAACGTAAGCATCGTCATATCCTAAATGTAGCTAGGCCTCTTCTTTTTCTGTCACAGGTTCAACTTAATTTTTGGGGAGAATGCATTTTAACGGCTGTTTATCTTATAAATAGAACACATCACCATTGTTATCTAACAAAACACCCTTTGAAGCACTCTACAAACGACCACCTACATTTCACCATCTTAAAGTTTTTTGTTACAAGTGTTATGCAACTGTAGTACATCCTAAGCAAAAATTTGAACCTCGGGCAATTCCTTGTGTTTTCATAGGATATCCTTGTGGTCACAAAAGTTACAAGTTGTATGACATGCAATCTAAAAAATTCTTTATCAGTCGTGATGTTAAATTTTGTGACGATGATTTTCCGTTTTCATCAACTTCACAAACTTTGACATTAGCTCCTTCAACTCCCGTTTTACCATTTCATGATCCATCCTACCCAAACATCCATTCTAATCCTTCTATTCCTTCGTCGTCTCCTCCGCCTTCTATTCCTTCTCCAAATTCATAAGTTCCAGATTCACCCACTAAATCTAATCTTATCCCACTTGATACATCAGTTCCACTTCGACGTTCTACTTCTACCAAACGACCTCCAGCTTATTATAATGATAATGAGATGTCTTCTGGAGCCAATCATTTAACTCTAGCTCAAGTCCCAACTCTGGCACCAAGTATCCCCTTCATCATTACCTTTCATTCTCTCATTTTTCTTCTACTAAATGTGCTTTTCTAGCTCTTATTACAGCCTAGACAAAACCTAAAACCTATAATGAGGCAGTTGGCAACCCATTATGGCAGCAGGCTATGAATGATGAAATTGTAGCTTTGGAACATAATCATACTTGGTCTCTCGTTCCTCTACCACCTAGCCATAAAGCTATTGGTTGGTGTTGGGTGTACAAGATTAAACACAACTCTGATGGTTCTGTTGAACATTACAAAGCTCGACGGGTAGCAAAGGGATACACTCAGGTTGAAGGTGTTGATTACAAAGAGACATTTTCTCCTACAACGAAACTTACTACACTTCGTTACTTACTCACTATTGTCGTTGCTCGAAAATGGTTCACTCATCAATTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTATTCGCTGA

mRNA sequence

ATGCTGTTCCGGGCGGTTGACGAGTCGGGCTTTGAGAAGATTGTCAGGGCAACTATTTCAAAAGAAGCGTCGGACACTTTAGAAAAGGTGTTCAAAGGAACTGACCGAGTCAAGCAAGTGCTTCTCCAAACTCTGTGTGGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAGAAAATGTATCTGACCACATTGCGCACATACAGACCGTGGCAAATCAATTAAATCGAAACGGAGAAATGTTACCCGAGACGCGAGTTGTGGAGAAGATCTTGAGGTCGTTAACCGACAACTTCGAGAATGTTGTATGTGCGACAGAAGAGTCAAAGGACCTAGCGAAGTTCACAGTCAATGAGCTTGCCGGTTCTCTTAAGGCACACGAGCAACGTAAGAAAAAGAAGGAGGAGACACTCGATCAAGCGCTTCAGATTAAGGCATCAATAAAGGATGAAAAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTCGGAGGTCTCTATCATATTTCTTTATCTTCTATCAAATCTTCAGCAAATCAAGTATCTCAGTCATCTCATTTGTGGCATTTACGCCTAGTTCCACTTCGACGTTCTACTTCTACCAAACGACCTCCAGCTTATTATAATGATAATGAGATGTCTTCTGGAGCCAATCATTTAACTCTAGCTCAAGTCCCAACTCTGGCACCAATTGGCAACCCATTATGGCAGCAGGCTATGAATGATGAAATTGTAGCTTTGGAACATAATCATACTTGGTCTCTCGTTCCTCTACCACCTAGCCATAAAGCTATTGGTTGGTGTTGGGTGTACAAGATTAAACACAACTCTGATGGTTCTGTTGAACATTACAAAGCTCGACGGGTAGCAAAGGGATACACTCAGGTTGAAGGTGTTGATTACAAAGAGACATTTTCTCCTACAACGAAACTTACTACACTTCGTTACTTACTCACTATTGTCGTTGCTCGAAAATGGTTCACTCATCAATTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTATTCGCTGA

Coding sequence (CDS)

ATGCTGTTCCGGGCGGTTGACGAGTCGGGCTTTGAGAAGATTGTCAGGGCAACTATTTCAAAAGAAGCGTCGGACACTTTAGAAAAGGTGTTCAAAGGAACTGACCGAGTCAAGCAAGTGCTTCTCCAAACTCTGTGTGGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAGAAAATGTATCTGACCACATTGCGCACATACAGACCGTGGCAAATCAATTAAATCGAAACGGAGAAATGTTACCCGAGACGCGAGTTGTGGAGAAGATCTTGAGGTCGTTAACCGACAACTTCGAGAATGTTGTATGTGCGACAGAAGAGTCAAAGGACCTAGCGAAGTTCACAGTCAATGAGCTTGCCGGTTCTCTTAAGGCACACGAGCAACGTAAGAAAAAGAAGGAGGAGACACTCGATCAAGCGCTTCAGATTAAGGCATCAATAAAGGATGAAAAGGACTTGGCTACGGGGAAGATGATTGGCTCGGGTAAACAATTCGGAGGTCTCTATCATATTTCTTTATCTTCTATCAAATCTTCAGCAAATCAAGTATCTCAGTCATCTCATTTGTGGCATTTACGCCTAGTTCCACTTCGACGTTCTACTTCTACCAAACGACCTCCAGCTTATTATAATGATAATGAGATGTCTTCTGGAGCCAATCATTTAACTCTAGCTCAAGTCCCAACTCTGGCACCAATTGGCAACCCATTATGGCAGCAGGCTATGAATGATGAAATTGTAGCTTTGGAACATAATCATACTTGGTCTCTCGTTCCTCTACCACCTAGCCATAAAGCTATTGGTTGGTGTTGGGTGTACAAGATTAAACACAACTCTGATGGTTCTGTTGAACATTACAAAGCTCGACGGGTAGCAAAGGGATACACTCAGGTTGAAGGTGTTGATTACAAAGAGACATTTTCTCCTACAACGAAACTTACTACACTTCGTTACTTACTCACTATTGTCGTTGCTCGAAAATGGTTCACTCATCAATTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTATTCGCTGA

Protein sequence

MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENVSDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELAGSLKAHEQRKKKKEETLDQALQIKASIKDEKDLATGKMIGSGKQFGGLYHISLSSIKSSANQVSQSSHLWHLRLVPLRRSTSTKRPPAYYNDNEMSSGANHLTLAQVPTLAPIGNPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGIR

Homology

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BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-32
Identity = 81/186 (43.55%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 173  LSSIKSSANQVSQSSHLWHLRLVPLRRSTSTKRPPAYYNDNEMSSGANHLTLAQVPTLA- 232
            L+ I ++ NQ   ++H           S  T+        N   S A  L     P  A 
Sbjct: 912  LAQIVNNNNQAPLNTH-----------SMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAI 971

Query: 233  -PIGNPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWC-WVYKIKHNSDGSVEHYKAR 292
              + +  W+ AM  EI A   NHTW LVP PPSH  I  C W++  K+NSDGS+  YKAR
Sbjct: 972  QALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKAR 1031

Query: 293  RVAKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVY 352
             VAKGY Q  G+DY ETFSP  K T++R +L + V R W   QLDV NAFL G L ++VY
Sbjct: 1032 LVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVY 1086

Query: 353  MSLPPG 356
            MS PPG
Sbjct: 1092 MSQPPG 1086

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BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.9e-32
Identity = 76/159 (47.80%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 200  STSTKRPPAYYNDNEMSSGANHLTLAQVPTLA--PIGNPLWQQAMNDEIVALEHNHTWSL 259
            S +T+        N+  S A  L     P  A   + +  W+QAM  EI A   NHTW L
Sbjct: 911  SMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDL 970

Query: 260  VPLPPSHKAIGWC-WVYKIKHNSDGSVEHYKARRVAKGYTQVEGVDYKETFSPTTKLTTL 319
            VP PP    I  C W++  K NSDGS+  YKAR VAKGY Q  G+DY ETFSP  K T++
Sbjct: 971  VPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSI 1030

Query: 320  RYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
            R +L + V R W   QLDV NAFL G L +EVYMS PPG
Sbjct: 1031 RIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

[Close]

BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 7.0e-25
Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 238  WQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQ 297
            W++A+N E+ A + N+TW++   P +   +   WV+ +K+N  G+   YKAR VA+G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 298  VEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGI 357
               +DY+ETF+P  ++++ R++L++V+      HQ+DV+ AFL+G L EE+YM LP GI
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

[Close]

BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-23
Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 0


Query: 196 PLRRSTSTKRPPAYYNDNE---MSSGANHLTLAQVPTLAPIGNPLWQQAMNDEIVALEHN 255
           PLRRS   +     Y   E   +S      +L +V +  P  N L  +AM +E+ +L+ N
Sbjct: 783 PLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLS-HPEKNQL-MKAMQEEMESLQKN 842

Query: 256 HTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQVEGVDYKETFSPTTK 315
            T+ LV LP   + +   WV+K+K + D  +  YKAR V KG+ Q +G+D+ E FSP  K
Sbjct: 843 GTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVK 902

Query: 316 LTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
           +T++R +L++  +      QLDV+ AFLHG+L+EE+YM  P G
Sbjct: 903 MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

[Close]

BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 235 NPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKG 294
           +P W QAM +E+ AL  N TW LVP P +   +G  WV+K K +SDG+++  KAR VAKG
Sbjct: 37  DPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG 96

Query: 295 YTQVEGVDYKETFSPTTKLTTLRYLLTI 323
           + Q EG+ + ET+SP  +  T+R +L +
Sbjct: 97  FHQEEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL
Match: A0A6A3BX58 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilonHSYRG00095 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.8e-54
Identity = 126/168 (75.00%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           MLFRAVDESGFEKI  A  SKEA D L KVFKG DRVKQV LQTL GELES+KMKE E+V
Sbjct: 72  MLFRAVDESGFEKIAGAATSKEAWDILGKVFKGADRVKQVRLQTLRGELESIKMKELESV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQLNRNGE L E RVVEKILRSLTDNFENVVCA EESKDLA  TVNEL 
Sbjct: 132 SDYITRVQTVVNQLNRNGEALTEARVVEKILRSLTDNFENVVCAIEESKDLATLTVNELT 191

Query: 121 GSLKAHEQR-KKKKEETLDQALQIKASIKDEKDLATGKMIGSGKQFGG 168
           GSL+AHEQR KKKKEETL+QALQ KA IKDEK   +    G G+  GG
Sbjct: 192 GSLEAHEQRKKKKKEETLEQALQTKALIKDEKVFYSQNFRGKGRGRGG 239

[Close]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL
Match: A0A6A3BX58 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilonHSYRG00095 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.8e-27
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 209 YYNDNEMSSGANHLTLAQVPTLAPIGNPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIG 268
           YY+ NE++          +     + +  W+ AMN+EI A++ N+TW L  LP   + IG
Sbjct: 824 YYSTNEVNLVCLLADAENISFEEALRDKKWRTAMNEEIEAIDRNNTWELAELPKGSQPIG 883

Query: 269 WCWVYKIKHNSDGSVEHYKARRVAKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKW 328
             WV+K K N+ G +E YKAR VAKGY Q  G+DY E F+P  ++ T+R L++     KW
Sbjct: 884 VKWVFKKKMNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETIRLLISQAAQFKW 943

Query: 329 FTHQLDVQNAFLHGNLDEEVYMSLPPG 356
              Q+DV++AFL+G L+E++Y+  PPG
Sbjct: 944 PIFQMDVKSAFLNGVLEEDIYIEQPPG 970

HSP 2 Score: 217.6 bits (553), Expect = 8.3e-53
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           MLFRAVDESGFEKI  A  SKEA D L KVFKG +RVKQV LQTL GELES+K+KE E+V
Sbjct: 72  MLFRAVDESGFEKIAGAATSKEAWDILGKVFKGANRVKQVRLQTLRGELESIKLKELESV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQLNRNGE L E RVVEKILRSLTDNFENVVCA EESKDLA  TVNEL 
Sbjct: 132 SDYITRVQTVVNQLNRNGEALTEARVVEKILRSLTDNFENVVCAIEESKDLATLTVNELT 191

Query: 121 GSLKAHEQR-KKKKEETLDQALQIKASIKDEKDLATGKMIGSGKQFGG 168
           GSL+AHEQR KKKKEETL+QALQ KA IKDEK   +    G G+  GG
Sbjct: 192 GSLEAHEQRKKKKKEETLEQALQTKALIKDEKVFYSQNFRGKGRGRGG 239

[Close]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL
Match: A0A6A3AD07 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilonHSYRG00411 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 238 WQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQ 297
           W+ AMN+EI A++ N+TW L  LP   + IG  WV+K K N+ G +E YKAR VAKGY Q
Sbjct: 853 WRTAMNEEIEAIDRNNTWELAELPKGSQPIGVKWVFKKKMNAQGEIERYKARLVAKGYKQ 912

Query: 298 VEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
             G+DY E F+P  ++ T+R L++     KW   Q+DV++AFL+G L+E++Y+  PPG
Sbjct: 913 KAGIDYDEVFAPVARMETIRLLISQAAQFKWPIFQMDVKSAFLNGVLEEDIYIEQPPG 970

HSP 2 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 124/168 (73.81%), Postives = 133/168 (79.17%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           MLFRAVDESGFEKI  A  SKEA D L KVFKG DRVKQV LQTL GELES+KMKE E+V
Sbjct: 72  MLFRAVDESGFEKIAGAATSKEAWDILGKVFKGADRVKQVRLQTLRGELESIKMKELESV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQLN NGE L E RVVEKILRSLTDNFENVVCA EESKDLA  T+NEL 
Sbjct: 132 SDYITRVQTVVNQLNCNGEALTEARVVEKILRSLTDNFENVVCAIEESKDLATLTINELT 191

Query: 121 GSLKAHEQRKKK-KEETLDQALQIKASIKDEKDLATGKMIGSGKQFGG 168
           GSL+AHEQRKKK KEETL+QALQ KA IKDEK   +    G G+  GG
Sbjct: 192 GSLEAHEQRKKKRKEETLEQALQTKALIKDEKVFYSQNFRGKGRGRGG 239

[Close]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL
Match: A0A6A3CZT6 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001732pilonHSYRG00018 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 238 WQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQ 297
           W+  MN+EI A++ N+TW L  LP   + IG  WV+K K N+ G +E YKAR VAKGY Q
Sbjct: 853 WRTVMNEEIEAIDRNNTWELAELPKGSQPIGVKWVFKKKMNAQGEIERYKARLVAKGYKQ 912

Query: 298 VEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
             G+DY E F+P  ++ T+R L++     KW   Q+DV++AFL+G L+E++Y+  PPG
Sbjct: 913 KAGIDYDEVFAPVVRMETIRLLISQAAQFKWPIFQMDVKSAFLNGVLEEDIYIEQPPG 970

HSP 2 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 124/168 (73.81%), Postives = 133/168 (79.17%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           MLFRAVDESGFEKI  A  SKEA D L KVFKG DRVKQV LQTL  ELES+KMKE E+V
Sbjct: 72  MLFRAVDESGFEKIAGAATSKEAWDILGKVFKGADRVKQVRLQTLRDELESIKMKELESV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQLNRNGE L E RV+EKILRSLTDNFENVVCA EESKDLA  TVNEL 
Sbjct: 132 SDYITRVQTVVNQLNRNGEALTEARVMEKILRSLTDNFENVVCAIEESKDLATLTVNELT 191

Query: 121 GSLKAHEQR-KKKKEETLDQALQIKASIKDEKDLATGKMIGSGKQFGG 168
           GSL+AHEQR KKKKEETL+QALQ KA IKDEK   +    G G+  GG
Sbjct: 192 GSLEAHEQRKKKKKEETLEQALQTKALIKDEKVFYSQNFRGKGRGRGG 239

[Close]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL
Match: A0A6A3ASE2 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110418pilonHSYRG00346 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.4e-13
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 238 WQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYTQ 297
           W+ AMN+EI A++ N+TW L  LP   + I                          GY Q
Sbjct: 829 WRTAMNEEIEAIDRNNTWELAELPKGSQPI--------------------------GYKQ 888

Query: 298 VEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
             G+DY E F+P  ++ T+R L++     KW   Q+DV++AFL+G L+E++Y+  PPG
Sbjct: 889 KAGIDYDEVFAPVARMETIRLLISQAAQFKWPIFQMDVKSAFLNGVLEEDIYIEQPPG 920

HSP 2 Score: 211.1 bits (536), Expect = 7.8e-51
Identity = 116/164 (70.73%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           +L++A+DESGFEKI  AT SKEA +TLEKVFKG DRVKQV LQTL GELE MKMKESE V
Sbjct: 48  LLYQAIDESGFEKIAGATTSKEAWNTLEKVFKGADRVKQVRLQTLRGELEGMKMKESEGV 107

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQL RNGEML + RVVEKILRSLT+NFENVVCA EESKDL   TV ELA
Sbjct: 108 SDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEESKDLGTLTVEELA 167

Query: 121 GSLKAHE-QRKKKKEETLDQALQIKASIKDEKDLATGKMIGSGK 164
           GSL+AHE Q+KKKKEE L++ LQ KA+IKD+K L +    G G+
Sbjct: 168 GSLEAHEQQKKKKKEEMLEEVLQSKATIKDDKVLYSQNFCGRGR 211

[Close]

BLAST of CmoCh07G008350 vs. NCBI nr
Match: GEV96962.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 145/360 (40.28%), Postives = 211/360 (58.61%), Query Frame = 0


Query: 2   LFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENVS 61
           LF+++DESGFEKI  ATI+KEA D LEKV+KG DRVK+V L+TL  ELE++KMKE+E + 
Sbjct: 10  LFQSIDESGFEKIASATIAKEAWDFLEKVYKGADRVKRVTLKTLHCELEAIKMKETEGIY 69

Query: 62  DHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELAG 121
           D+I  +QTV N+L RNGE L ++R VEKIL SLTD FENVVCA           +++L+ 
Sbjct: 70  DYITRVQTVVNKLKRNGESLTDSRAVEKILWSLTDKFENVVCA-----------IDDLSS 129

Query: 122 SLKAHEQRK-KKKEETLDQALQIKASIKDEK-DLATGKMIGSGKQFGGLYHISLSSIKSS 181
           SL+ HEQRK K K+E+ D ALQ    + D K + A     G G+   G  H+  + + ++
Sbjct: 130 SLEEHEQRKLKNKQESFDVALQTNVIVDDGKEEKAMYVEQGRGR---GFDHVDDTVMMTN 189

Query: 182 ANQVSQSSHLWHLRLVPLRRSTSTKRPP-----AYYNDNEMSSGANHLTLAQVPTLAPIG 241
              V + +  W+L      ++ + +  P      Y + N+M    +      V     + 
Sbjct: 190 EEVVLEINTTWYLDTAATNQNLNDEDEPKSLQNLYDSANKMHFVCHKADSESVSLEKAVR 249

Query: 242 NPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKG 301
           +  W+ AM++EI ++E N T  LV LP  H+ IG  WV+  K N+ G VE +KAR +A G
Sbjct: 250 DKKWKVAMDEEITSIEMNETCDLVELPKGHQPIGVKWVFSKKMNTQGEVERHKARLIATG 309

Query: 302 YTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPP 355
           Y Q   +D  E F+   ++ ++R L++     KW  +  DV++  L+G L EEVY+  PP
Sbjct: 310 YQQQPEIDCDEIFASVARMESIRLLISQAAQFKWSIYHTDVKSTLLNGVLKEEVYVKQPP 355

[Close]

BLAST of CmoCh07G008350 vs. NCBI nr
Match: XP_023521026.1 (putative WEB family protein At1g65010, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-57
Identity = 129/163 (79.14%), Postives = 140/163 (85.89%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           ML  AVDE GFEKI RAT SKE  DTLEKVFKGTD+VK V LQTL GELESMKMKESENV
Sbjct: 72  MLLWAVDELGFEKIARATTSKEGWDTLEKVFKGTDQVKLVRLQTLRGELESMKMKESENV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
            D+I  IQTVANQLNRNGEMLPETRVVEKILRSLTDNFENV+C  EESK+LAKFTV+ELA
Sbjct: 132 FDYITRIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVICVIEESKNLAKFTVDELA 191

Query: 121 GSLKAHEQRKKKKEETLDQALQIKASIKDEKDLATGKMIGSGK 164
           GSL+AHEQRKKKK+ETLDQALQ KAS+KDEK   +  + G G+
Sbjct: 192 GSLQAHEQRKKKKKETLDQALQTKASLKDEKVHYSQNIQGRGR 234

[Close]

BLAST of CmoCh07G008350 vs. NCBI nr
Match: GEZ08408.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-53
Identity = 147/364 (40.38%), Postives = 206/364 (56.59%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           +LF++VDESGFEKI  A+ +K+A DTLEK +KG DRVKQV LQTL GELE+MKMKE+E V
Sbjct: 76  LLFQSVDESGFEKIAGASTAKQAWDTLEKAYKGADRVKQVRLQTLRGELEAMKMKEAEGV 135

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+   +QTV NQL RNGE LP++R++EKILRSL   FENVVC  EE+KDL + T+ ELA
Sbjct: 136 SDYNTRVQTVVNQLKRNGENLPDSRIIEKILRSLNKKFENVVCVIEEAKDLEELTIEELA 195

Query: 121 GSLKAHEQRK-KKKEETLDQALQIKASIKDEKDL--ATGKMIGSGKQFGGLYHISLSSIK 180
           GSL+AHEQ K +KK+E+LD+ALQ KA+IK+EK L       I      G   +      +
Sbjct: 196 GSLEAHEQSKNRKKQESLDEALQTKATIKEEKALYAQRNNYIRGNNTKGCNTNRGRGRGR 255

Query: 181 SSANQVSQSSHLWHLRLVPLRRSTSTKRPPAYYNDN-EMSSGANH----LTLAQVPTLAP 240
             ++Q  Q S     R     R     R    ++ N +  +   H         V     
Sbjct: 256 DDSHQERQQSSYQRSR----GRGHGRGRGEHEFHPNVDCYNCGKHGHYVKDCRSVKRTEE 315

Query: 241 IGNPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHY-KARRV 300
             N + +  + +  V L  +        P S   + W       H+  G    + +   V
Sbjct: 316 NTNLVTEPDVKEGGVLLMAHEE------PVSKVDMIWYLDSGTSHHMSGQRNLFTELTEV 375

Query: 301 AKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMS 356
            +G+    G+D+ E F+P  ++ T+R L+++    +W  +Q+DV++AFL+G LDE VY  
Sbjct: 376 IEGHVSF-GIDFDEIFAPVARMETIRLLVSLAAQNRWKIYQMDVKSAFLNGVLDEVVYRE 428

[Close]

BLAST of CmoCh07G008350 vs. NCBI nr
Match: KAE8721174.1 (hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus])

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-53
Identity = 126/168 (75.00%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           MLFRAVDESGFEKI  A  SKEA D L KVFKG DRVKQV LQTL GELES+KMKE E+V
Sbjct: 72  MLFRAVDESGFEKIAGAATSKEAWDILGKVFKGADRVKQVRLQTLRGELESIKMKELESV 131

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQLNRNGE L E RVVEKILRSLTDNFENVVCA EESKDLA  TVNEL 
Sbjct: 132 SDYITRVQTVVNQLNRNGEALTEARVVEKILRSLTDNFENVVCAIEESKDLATLTVNELT 191

Query: 121 GSLKAHEQR-KKKKEETLDQALQIKASIKDEKDLATGKMIGSGKQFGG 168
           GSL+AHEQR KKKKEETL+QALQ KA IKDEK   +    G G+  GG
Sbjct: 192 GSLEAHEQRKKKKKEETLEQALQTKALIKDEKVFYSQNFRGKGRGRGG 239

[Close]

BLAST of CmoCh07G008350 vs. NCBI nr
Match: KAE8721174.1 (hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-26
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 209 YYNDNEMSSGANHLTLAQVPTLAPIGNPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIG 268
           YY+ NE++          +     + +  W+ AMN+EI A++ N+TW L  LP   + IG
Sbjct: 824 YYSTNEVNLVCLLADAENISFEEALRDKKWRTAMNEEIEAIDRNNTWELAELPKGSQPIG 883

Query: 269 WCWVYKIKHNSDGSVEHYKARRVAKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKW 328
             WV+K K N+ G +E YKAR VAKGY Q  G+DY E F+P  ++ T+R L++     KW
Sbjct: 884 VKWVFKKKMNAQGEIERYKARLVAKGYKQKAGIDYDEVFAPVARMETIRLLISQAAQFKW 943

Query: 329 FTHQLDVQNAFLHGNLDEEVYMSLPPG 356
              Q+DV++AFL+G L+E++Y+  PPG
Sbjct: 944 PIFQMDVKSAFLNGVLEEDIYIEQPPG 970

HSP 2 Score: 219.9 bits (559), Expect = 3.4e-53
Identity = 150/381 (39.37%), Postives = 210/381 (55.12%), Query Frame = 0


Query: 1   MLFRAVDESGFEKIVRATISKEASDTLEKVFKGTDRVKQVLLQTLCGELESMKMKESENV 60
           +LF++VDESGFEKI  A+ +K+A D LEK +KG DRVKQV LQTL GELE+MKMKE+E V
Sbjct: 76  LLFQSVDESGFEKIAGASTAKQAWDKLEKAYKGADRVKQVRLQTLRGELEAMKMKEAEGV 135

Query: 61  SDHIAHIQTVANQLNRNGEMLPETRVVEKILRSLTDNFENVVCATEESKDLAKFTVNELA 120
           SD+I  +QTV NQL RNGE LP++R++EK LRSL   FENVVCA EE+KDL + T+ ELA
Sbjct: 136 SDYITRVQTVVNQLKRNGENLPDSRIIEKTLRSLNKKFENVVCAIEEAKDLEELTIEELA 195

Query: 121 GSLKAHEQRK-KKKEETLDQALQIKASIKDEKDL------------ATGKMIGSGKQFGG 180
           GSL+AHEQRK +KK+E+LD+ALQ KA+IK+EK L              G+    G+  G 
Sbjct: 196 GSLEAHEQRKNRKKQESLDEALQTKATIKEEKALYAQRNNYSRGNNTRGRNTNRGRDRG- 255

Query: 181 LYHISLSSIKSSANQVSQSSHLWHLRLVPLRRSTSTKRPPAYYNDN-EMSSGANHLTLAQ 240
                    +  ++Q  Q S     R     R     R    Y  N +  +   H   A+
Sbjct: 256 ---------RDDSHQERQQSSYQRSR----GRGRGRGRGEHEYRPNVDCYNCGKHGHYAK 315

Query: 241 VPTLAPIGNPLWQQAMNDEIVA---LEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSV 300
               A       +   N  +V    +E      +    P  + +   W        D   
Sbjct: 316 DCRSAK------RTEENTNLVTEPDVEEGGVLLMAHEEPVSE-VDMIWYL------DSGA 375

Query: 301 EHYKARR---------VAKGYTQVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLD 356
            H+ +R+         V +G+    G+D+ E F+   ++ T+R L+++    +W  +Q+D
Sbjct: 376 SHHMSRQRNLFTELTEVIQGHVSF-GIDFDEIFAHVARMETIRLLVSLAAQNRWKIYQMD 428

[Close]

BLAST of CmoCh07G008350 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-38
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 237 LWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKGYT 296
           +W  AM+DEI A+E  HTW +  LPP+ K IG  WVYKIK+NSDG++E YKAR VAKGYT
Sbjct: 97  VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYT 156

Query: 297 QVEGVDYKETFSPTTKLTTLRYLLTIVVARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG 356
           Q EG+D+ ETFSP  KLT+++ +L I     +  HQLD+ NAFL+G+LDEE+YM LPPG
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPG 215

[Close]

BLAST of CmoCh07G008350 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-17
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 235 NPLWQQAMNDEIVALEHNHTWSLVPLPPSHKAIGWCWVYKIKHNSDGSVEHYKARRVAKG 294
           +P W QAM +E+ AL  N TW LVP P +   +G  WV+K K +SDG+++  KAR VAKG
Sbjct: 37  DPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKG 96

Query: 295 YTQVEGVDYKETFSPTTKLTTLRYLLTI 323
           + Q EG+ + ET+SP  +  T+R +L +
Sbjct: 97  FHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of CmoCh07G008350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.6e-32	43.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.9e-32	47.80	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	7.0e-25	41.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	3.9e-23	38.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	2.7e-16	45.45	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh07G008350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A3BX58	9.8e-54	75.00	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilon...	[more]
A0A6A3BX58	7.8e-27	40.82	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00016637pilon...	[more]
A0A6A3AD07	5.1e-26	47.46	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilon...	[more]
A0A6A3CZT6	1.5e-25	46.61	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001732pilon...	[more]
A0A6A3ASE2	8.4e-13	34.75	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110418pilon...	[more]

BLAST of CmoCh07G008350 vs. NCBI nr


Match Name	E-value	Identity	Description
GEV96962.1	1.1e-59	40.28	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii...	[more]
XP_023521026.1	1.4e-57	79.14	putative WEB family protein At1g65010, chloroplastic [Cucurbita pepo subsp. pepo...	[more]
GEZ08408.1	1.5e-53	40.38	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii...	[more]
KAE8721174.1	2.0e-53	75.00	hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]	[more]
KAE8721174.1	1.6e-26	40.82	hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]	[more]

BLAST of CmoCh07G008350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-38	59.66	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.9e-17	45.45	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..150
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..132 e-value: 2.6E-23 score: 82.3
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 14..158
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 14..158
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 252..356 e-value: 2.8E-32 score: 112.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G008350.1	CmoCh07G008350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding