CmoCh07G008320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G008320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWIM-type domain-containing protein
Location	Cmo_Chr07: 3889160 .. 3890444 (-)
RNA-Seq Expression	CmoCh07G008320
Synteny	CmoCh07G008320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATAGTTTGCCCAGCTTGTTTGCTATTTTATTTCCATTGGGCTCTTTTCAATACCTTGATCTCAATTTATATGATTGTTATATAAGATTTGGTGGCTTGTTGAGTAACTTAAGATTGAAGTATGATCATTTTACAAACACACCCAAGATTAACTGGACGTTGCATTTGTTATGGCGTGTAGATCCGTCCACATGGAGGCACCGCTCGAGTCTTGTCATTGAGGTTAGACTTCTTACACCTCTTTGGCCTTCTGCACTACGTTTACATAATTTATGTTTCATCTTTTTCAGATCCTTTAGATACACTTCTATTTTACGAGTTGATGCTTCTGAATTTTGCAGGAATGTGTATATAGTAACTGTTAAATAAGATCAGTTCAAGTACTTGTTCAGTTTAGGTAGCTAGAGTATGAGTAGAATTGTTTAGTTGAGTAGAATTGTTTAGTTGGCAGGCCTGTCAAGGTTACGGTGATTTTGGGTAGTGTAACAGCTCAAGCCCACCGCTAGCAAATATGACCCTTTTTTTAACTTTCTCTTTTAGGCTTCTCCTCAAGGTTTTGAAACGCGTTGAGAGGTTTCTATACCTTTATAAAAAATGTTTCGCTCCCCTCTCTAACCAATGTGGGATCTCCCCCCTTGGAAGCCAGCGTCCTCATTGACACATAACAAGTCAAAATGGACAATATCTACTAGCGGCTTGAGGTGTTGTTATAAGTAAGCACTCCAGAAATTGTACCTCCGATTTTACAATGGCAAATTGCCTAGTTTGTTGCCATCACGTATTGAAGGGAACACAGATCATGTACTAATTAGATATCTGTACTACTTACATTCAATCCGAAAATAAAGTCAAAATGTTTCTAGCCGTGTAAGTTGATTCTTTGATTCAATAACTAGCTCCAGCAAAATGGCATTGATTGATGAAAGTTGTGCCAATATATATGATAATTTTTTCTGCACTTAATTGAACATTTTAATCTTAATCTTAGGCTTAAAAGTTAAAGAAAATTAGTAGTTTTTTTAGTATAATTTTGGAAGTTTTAGAGCCATTCTAGTTTAA

mRNA sequence

ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATATTTTAGAGCCATTCTAGTTTAA

Coding sequence (CDS)

ATGGCTTGGACCCATCAGATTCTGGATGAAATTCAGAAACTAGTTGAATTGAGTTTTTCAAATGATATAAGCTCTGCGGTAAATAAGCTGCCCTTGAAATGGGGTTCTGGGAAGGGAAGAACCAGTTTTAGGAAGCCATCATCTATCATGGCTGTTCCATCGGTGCCCAATACTGTCAGAAAGGCCATGCGAAGGAACCGGAAAAGGAAAAGATTATCCAGACCAAGATATTTTAGAGCCATTCTAGTTTAA

Protein sequence

MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVRKAMRRNRKRKRLSRPRYFRAILV

Homology

[Close]

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL
Match: A0A6J1BTP7 (uncharacterized protein LOC111005669 OS=Momordica charantia OX=3673 GN=LOC111005669 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.2e-24
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILD+IQKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS MAVP  PNTV+
Sbjct: 642 MAWTHQILDQIQKLVELNSSNDISSMVNKLPLKWASGKGRTSFRKPSSTMAVPPDPNTVK 701

Query: 61  KAM-RRNRKRKRLSR 75
           KA+ ++NRKRKRLSR
Sbjct: 702 KALPKKNRKRKRLSR 716

[Close]

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL
Match: A0A5A7SLI4 (SWIM zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00090 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS ++ PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVSFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLS 74
           KAM ++N+KRKRLS
Sbjct: 702 KAMQKKNQKRKRLS 715

[Close]

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL
Match: A0A1S3B2L2 (uncharacterized protein LOC103485285 OS=Cucumis melo OX=3656 GN=LOC103485285 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS ++ PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVSFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLS 74
           KAM ++N+KRKRLS
Sbjct: 702 KAMQKKNQKRKRLS 715

[Close]

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL
Match: A0A0A0KIZ0 (SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G483290 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.7e-22
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +  PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 702 KAMQKKNQKRKRLSSIR 718

[Close]

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL
Match: A0A6J1GD77 (uncharacterized protein LOC111453111 OS=Cucurbita moschata OX=3662 GN=LOC111453111 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-21
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDEIQKLVEL+ SNDISS VNKLPLKW SGKGRTS RKPSS +A P   N V+
Sbjct: 642 MAWTHQILDEIQKLVELNSSNDISSVVNKLPLKWASGKGRTSCRKPSSTVAFPLESNIVK 701

Query: 61  KAM-RRNRKRKRLS 74
           KAM ++NRKRKRLS
Sbjct: 702 KAMPKKNRKRKRLS 715

[Close]

BLAST of CmoCh07G008320 vs. NCBI nr
Match: XP_022132951.1 (uncharacterized protein LOC111005669 [Momordica charantia] >XP_022132952.1 uncharacterized protein LOC111005669 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 8.6e-24
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILD+IQKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS MAVP  PNTV+
Sbjct: 642 MAWTHQILDQIQKLVELNSSNDISSMVNKLPLKWASGKGRTSFRKPSSTMAVPPDPNTVK 701

Query: 61  KAM-RRNRKRKRLSR 75
           KA+ ++NRKRKRLSR
Sbjct: 702 KALPKKNRKRKRLSR 716

[Close]

BLAST of CmoCh07G008320 vs. NCBI nr
Match: XP_008441058.1 (PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo] >KAA0025523.1 SWIM zinc finger family protein [Cucumis melo var. makuwa] >TYK25679.1 SWIM zinc finger family protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS ++ PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVSFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLS 74
           KAM ++N+KRKRLS
Sbjct: 702 KAMQKKNQKRKRLS 715

[Close]

BLAST of CmoCh07G008320 vs. NCBI nr
Match: XP_038882788.1 (uncharacterized protein LOC120073939 isoform X1 [Benincasa hispida] >XP_038882789.1 uncharacterized protein LOC120073939 isoform X1 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 59/77 (76.62%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +++PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVSLPSESNTVK 701

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 702 KAMQKKNQKRKRLSSIR 718

[Close]

BLAST of CmoCh07G008320 vs. NCBI nr
Match: XP_004148660.1 (uncharacterized protein LOC101204643 isoform X1 [Cucumis sativus] >KGN48347.1 hypothetical protein Csa_002774 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +  PS  NTV+
Sbjct: 642 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVK 701

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 702 KAMQKKNQKRKRLSSIR 718

[Close]

BLAST of CmoCh07G008320 vs. NCBI nr
Match: XP_031743010.1 (uncharacterized protein LOC101204643 isoform X2 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MAWTHQILDE+QKLVEL+ SNDISS VNKLPLKW SGKGRTSFRKPSS +  PS  NTV+
Sbjct: 517 MAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVK 576

Query: 61  KAM-RRNRKRKRLSRPR 77
           KAM ++N+KRKRLS  R
Sbjct: 577 KAMQKKNQKRKRLSSIR 593

[Close]

BLAST of CmoCh07G008320 vs. TAIR 10
Match: AT1G60560.1 (SWIM zinc finger family protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1   MAWTHQILDEIQKLVELSFSNDISSAVNKLPLKWGSGKGRTSFRKPSSIMAVPSVPNTVR 60
           MA T Q+ D+I++LV LS +NDIS+ VN LP+KWG  KGRT+   P+SI A         
Sbjct: 642 MALTLQMFDQIKQLVRLSGTNDISNIVNDLPVKWGCKKGRTTIGIPASIAAF-------- 701

Query: 61  KAMRRNRKRKR 72
              +R++KRKR
Sbjct: 702 -TKKRSQKRKR 703

The following BLAST results are available for this feature:

BLAST of CmoCh07G008320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G008320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BTP7	4.2e-24	82.67	uncharacterized protein LOC111005669 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7SLI4	2.3e-22	78.38	SWIM zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B2L2	2.3e-22	78.38	uncharacterized protein LOC103485285 OS=Cucumis melo OX=3656 GN=LOC103485285 PE=...	[more]
A0A0A0KIZ0	6.7e-22	76.62	SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G483290 P...	[more]
A0A6J1GD77	5.7e-21	78.38	uncharacterized protein LOC111453111 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]

BLAST of CmoCh07G008320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132951.1	8.6e-24	82.67	uncharacterized protein LOC111005669 [Momordica charantia] >XP_022132952.1 uncha...	[more]
XP_008441058.1	4.7e-22	78.38	PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo] >KAA0025523.1 SWI...	[more]
XP_038882788.1	4.7e-22	76.62	uncharacterized protein LOC120073939 isoform X1 [Benincasa hispida] >XP_03888278...	[more]
XP_004148660.1	1.4e-21	76.62	uncharacterized protein LOC101204643 isoform X1 [Cucumis sativus] >KGN48347.1 hy...	[more]
XP_031743010.1	1.4e-21	76.62	uncharacterized protein LOC101204643 isoform X2 [Cucumis sativus]	[more]

BLAST of CmoCh07G008320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60560.1	2.9e-09	47.89	SWIM zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33977	ZINC ION BINDING PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR33977:SF2	OS09G0309100 PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G008320.1	CmoCh07G008320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding