CmoCh07G007920 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G007920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 3624920 .. 3626110 (-)
RNA-Seq ExpressionCmoCh07G007920
SyntenyCmoCh07G007920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGAAGGAAGAAGAATTTAATAGAATTAGACAATGTGTGTTCCATTTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGATTTTCAACTCCTTTTTAGCTCTCTTCTTCTTCATCCGCTCCATTTCAAAGGTTCGTAGTTGCTTCGACCTTTCGTAGTTTTGACTTGTTCAATGTTACTTTTGTCTGCGATTCAAGTTGGAAACGTCTTTGATTTTTCTTCTATCTGTTGAATTTTGTTCTTCCGGAGTGTTTTCTTCGATTGAAATTTCCGTAAACCTATTCTTGGTGTTCGTCCTGATTCTTGTGGTTTATCGGTGAATTGGATCTATTTTAATGTGCGTTCTGCTTCGATTTTGTTGTTGGTTTTGTGTTTGTTGATTTTCTTGTTTTGGATTTGGTGGAGAGTGAGGAGATCTACTGATTAGTGTGTTCATTCTCAATCTCTGCATGTAATTGGGTCTCCTTACCCGATCATTTGGTTCTTCAGCTGTTGAAAGATTCTGTGGTTTTAGCTTGAATTTCTGGGATGGTTTTGGACTCGTTTGTGGACTTTTTTTTTTCTTCTTCTCTTTTTAATATATATTATGCTTATTCAATGGTATAGGAGTTAATTATGGCCAAAATGTAAAGATTCTTCAAGGAAACGACTCTCTGTCACGTTTTTTACTTTTTGTTATGTTGGTTTGAGATCTGAATCCCCTAATTTTAAATACTATGCCAATGGAAGCGCTTAAGTAGAAGGATCTACACTTTAAAATTAGCCTGTGCATTACTTACACGGGAGTGTTCGTTTTTGCTTGGCCAGTAGATGTTCTGTATTTTCAAGATTGTCTAGCGTCTGAAATTTATTGTCTGTAAATTAACTTGGAGTGCTCTTGTTAAAGTTGAAGTTTTCCTTCGAAATTTATGAACTATTGGGAGTTATTTTGACTTCCAATTTGGGTTATTTTCCCTCTGCGCCTAATGCTCATTTTAGATGATCAAGTTATACCTTATCTTGATTAAAGCTATAACGTTTTCTTGGTTCTTCTTTGTCTTTCTATTTATTTATTTTAATTATTTGTAATTTTATGATGGTAAATTTTATACTACAGTTAGTACTGCGGAGCATCAAGATCAAGCACTTCTGTTTCTTTCTTTTGAATGAAGATTGA

mRNA sequence

GAGAGAAGGAAGAAGAATTTAATAGAATTAGACAATGTGTGTTCCATTTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGATTTTCAACTCCTTTTTAGCTCTCTTCTTCTTCATCCGCTCCATTTCAAAGTTAGTACTGCGGAGCATCAAGATCAAGCACTTCTGTTTCTTTCTTTTGAATGAAGATTGA

Coding sequence (CDS)

ATGTGTGTTCCATTTCAATCGTTAAACATTCTCTGCCATTTTCCAGCATTTAATGGCGGCAATCCTGGGGCGTTTCTTCTGATTTTCAACTCCTTTTTAGCTCTCTTCTTCTTCATCCGCTCCATTTCAAAGTTAGTACTGCGGAGCATCAAGATCAAGCACTTCTGTTTCTTTCTTTTGAATGAAGATTGA

Protein sequence

MCVPFQSLNILCHFPAFNGGNPGAFLLIFNSFLALFFFIRSISKLVLRSIKIKHFCFFLLNED
Homology
[Close]
BLAST of CmoCh07G007920 vs. NCBI nr
Match: KAG7027116.1 (hypothetical protein SDJN02_11127 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 8.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MCVPFQSLNILCHFPAFNGGNPGAFLLIFNSFLALFFFIRSISKLVLRSIKIKHFCFFLL 60
          MCVPFQSLNILCHFPAFNGGNPGAFLLIFNSFLALFFFIRSISKLVLRSIKIKHFCFFLL
Sbjct: 1  MCVPFQSLNILCHFPAFNGGNPGAFLLIFNSFLALFFFIRSISKLVLRSIKIKHFCFFLL 60

Query: 61 NED 64
          NED
Sbjct: 61 NED 63

[Close]
BLAST of CmoCh07G007920 vs. NCBI nr
Match: KAG7034408.1 (hypothetical protein SDJN02_04137, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 1  MCVPFQSLNILC-HFPAFNGGNPGAFLLIFNSFLALFFFIRSISKLVLRSIKIKH----- 60
          M +P QSLNIL  HF AFNGG  GAFLL+FNSFLAL  F+  ISK  +   +I H     
Sbjct: 1  MSLPIQSLNILLRHFAAFNGGKSGAFLLLFNSFLALHLFL-LISKEKVFFNRITHEASLI 60

Query: 61 FCFFLLN 62
            FFL N
Sbjct: 61 LLFFLFN 66

The following BLAST results are available for this feature:
BLAST of CmoCh07G007920 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G007920 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027116.18.3e-27100.00hypothetical protein SDJN02_11127 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7034408.17.5e-0455.22hypothetical protein SDJN02_04137, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh07G007920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G007920.1CmoCh07G007920.1mRNA