CmoCh07G007820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G007820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	iron-sulfur assembly protein IscA, chloroplastic-like
Location	Cmo_Chr07: 3546833 .. 3549379 (+)
RNA-Seq Expression	CmoCh07G007820
Synteny	CmoCh07G007820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTAAAGGCGGCGAAACGCATATTGACCGTCGCCGTTCCCGTTCACCGGTTAATCACGGCATCACAACGGGCTTTCTCCTATGGCGTTCTCTTCGGTTCCCATGAAATGCCCTTCTGTTCTTCACCTGCGAGTTCTTCCTAAAAGTTCTGCAAAGCGAAGTTCAATTTCCTTTCCATATTTACCCACGGAAATCAGCCATAGGAATTCCTTATCAATTCGATCGGTTTCAGTCCCTGGTACGCCTCTTTTTCGAATTCCTACTTTATTTTTTTAATATTATACTTCACTGTAATATCGTAGTTCATGGATGCATTGTCTATGTAAGAATTAGTCTGAATTTTTTCTGTTTGGATTGGATTTGAAGCATGAAATTGTGAAGAATCTCAGATTCGAGTGATTTGTTTTTATTAATTGAACATACGATTCAGGTATTGATTGATTGGAATTGAAATTGTTAGCTGGTGTAAGCTTTATATTGAAATTGAGTAGCAGAATATTTGGGACTTTTCTTATTGATTTACATGGAAAATAACTTTTTGTTACTTGGAACGATTACCTGTTTGCGAGTTATAGTTCGAGATCCTGTTGGTTGATATACAAATCACAAATTTATGTCTTTAATTTGTTATAATGCCTGAATGATCAGAATGGATTGATCTTAATGTGCATTATTTCTCGTAGTTGTTAGCATTAATCGTTTCTTCTTTTTAGACATCTTCAGATGCAATATTATTTGTGATTTTCTTTTGGGCTTACTACATCAAAAGATAAAACCTATTAAATCTTGCATTACAGTTTCTGCATATGAAATATGATGATTATATTATGTCTTATGATCGAAGTTTACCCTTTCATCTTATTTTCTTAACATGAAAATTGTGATTGAACAGCTGCTCCAGCATCTGAGGGTATAGCTCCGGCTATCTCATTAACAGATAATGCACTGAAACACTTCAACAAAATGAGAACTGAACGTAATGAAGACTTGTGCTTAAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTCGACCTGATGACTCAATTATAGAATATAATGGTTTTGTGATTGGTAAGAGTTATAGCTTCACTGTTTTCACTGCATTTCTATTGATGGGTATTTCTTGAGCCATATGTCATAAATTTGAGGAACTTTATATTAGAAACCACGACTTTCTACAATGATATGATATTGTCCACTTTGAGCATAAGCTCTAATGACTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACCAATAAAGATGTATTCCTTACGAACCCATGATCATCCCCTAAATTAGCAAATGTTGGACACCCACCCAACCATCCTCAACAATTCTCCCCTCGAACAAAGTACACCATAGAGCCTCCCCTGAGAACTATGGAGCCTTCGAACTGTCTCCCCTTAATCCAGACTCAACTTTTTTCTCTGGAGCCCTCGAACAAAGTACACCCTTTATTCGACACTTGAGTCACTTTTGACTACACCTACGAGGCTCACAACTTCTTTGTTCGACATTTGAGAATTCTATTGACATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTAGAAACCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATAGTTTTGCTTTTGATTTCCTCGAAAGGCCTCGTACCAATGGAGATATATTCCTTACTTATAAACCCATGATATCCCCTTAATTAGCCAACGTGGGACTCCCTCCCAACAATCCTCAACACTTTATTTGTAGCTCATAATTCATCTCTTAGACTCTTAAGCGAGTTGAATTATTAGATATCAGTAATTTCTTATGCTACTAAGATGAATGTTGCGCAACTTTTTTCATTTATATATTGTTCTTTTATGCATACTGTTTGACATGAACGTGTATGTTGTTTCATTCCTTGGTAATTGCTCTCCTCTATGAATGAAGGAACTTATGCATGTTTTAGTGAACTACGAACGTGTCGTTTTGTCTACTTCGTTTTCGATATACTCTTGTGTTGTAGCCTCCTGTTCTCATTTGCTGTGTAGCTTGAGTTTCTGATACAAGCTTCCCTTTCTCCTCCTTGTTTTGTAGTATGTGATCCCAAGAGCCTACTGTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTTATCGGTGGGGGTTTCTCATTCAAGAACCCGAATGCTACACAAACTTGTGGTTGTGGAAAATCATTTGCTGCAGAAATGTAGGATCATCATTTGTATATATATGAATGGTTCAACAGGAACTTGATAGTTCTATGTTAAAGAAAACTTTGTTTTACCATTGATCCTAATAGTATACCTTCCATTACGAGTCTTCTGTAGGTTATATCTCTACTTTAACCCTTCCGGAAAAGGAAATTAGCTCTTCATGCTTAGTTCTAACTTATTACGCGCTATTTTCACTCGATGCTTCAGGGTCATCTTTTGATAGAGAGTATGTTTTTTCTGATACGATAAATGTGAAGATGTAGATTTGATC

mRNA sequence

AGTTAAAGGCGGCGAAACGCATATTGACCGTCGCCGTTCCCGTTCACCGGTTAATCACGGCATCACAACGGGCTTTCTCCTATGGCGTTCTCTTCGGTTCCCATGAAATGCCCTTCTGTTCTTCACCTGCGAGTTCTTCCTAAAAGTTCTGCAAAGCGAAGTTCAATTTCCTTTCCATATTTACCCACGGAAATCAGCCATAGGAATTCCTTATCAATTCGATCGGTTTCAGTCCCTGCTGCTCCAGCATCTGAGGGTATAGCTCCGGCTATCTCATTAACAGATAATGCACTGAAACACTTCAACAAAATGAGAACTGAACGTAATGAAGACTTGTGCTTAAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTCGACCTGATGACTCAATTATAGAATATAATGGTTTTGTGATTGTATGTGATCCCAAGAGCCTACTGTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTTATCGGTGGGGGTTTCTCATTCAAGAACCCGAATGCTACACAAACTTGTGGTTGTGGAAAATCATTTGCTGCAGAAATGTAGGATCATCATTTGTATATATATGAATGGTTCAACAGGAACTTGATAGTTCTATGTTAAAGAAAACTTTGTTTTACCATTGATCCTAATAGTATACCTTCCATTACGAGTCTTCTGTAGGTTATATCTCTACTTTAACCCTTCCGGAAAAGGAAATTAGCTCTTCATGCTTAGTTCTAACTTATTACGCGCTATTTTCACTCGATGCTTCAGGGTCATCTTTTGATAGAGAGTATGTTTTTTCTGATACGATAAATGTGAAGATGTAGATTTGATC

Coding sequence (CDS)

ATGGCGTTCTCTTCGGTTCCCATGAAATGCCCTTCTGTTCTTCACCTGCGAGTTCTTCCTAAAAGTTCTGCAAAGCGAAGTTCAATTTCCTTTCCATATTTACCCACGGAAATCAGCCATAGGAATTCCTTATCAATTCGATCGGTTTCAGTCCCTGCTGCTCCAGCATCTGAGGGTATAGCTCCGGCTATCTCATTAACAGATAATGCACTGAAACACTTCAACAAAATGAGAACTGAACGTAATGAAGACTTGTGCTTAAGAATTGGTGTCAGACAGGGTGGATGCTCTGGTATGTCCTACACGATGGAGTTTGAGAACAGGGCAAATGCTCGACCTGATGACTCAATTATAGAATATAATGGTTTTGTGATTGTATGTGATCCCAAGAGCCTACTGTTCTTGTTTGGAATGCAATTGGACTACAGCGACGCACTTATCGGTGGGGGTTTCTCATTCAAGAACCCGAATGCTACACAAACTTGTGGTTGTGGAAAATCATTTGCTGCAGAAATGTAG

Protein sequence

MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGIAPAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM

Homology

[Close]

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot
Match: Q9XIK3 (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISCA PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 9.7e-65
Identity = 120/155 (77.42%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 21  KSSAKRSSISFP---YLPTEISHRNSLSIRSVSVPAAPASEGIAPAISLTDNALKHFNKM 80
           +S    +SISFP   Y+   ++ RN LS+RS SVPAAPA EG+ PAISL++NALKH +KM
Sbjct: 26  RSVVSCNSISFPSLSYVNLNLNRRNRLSVRSASVPAAPAMEGLKPAISLSENALKHLSKM 85

Query: 81  RTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGFVIVCDPKSLLFLFG 140
           R+ER EDLCLRIGV+QGGCSGMSYTM+FENRANARPDDS IEY GF IVCDPKS+LFLFG
Sbjct: 86  RSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFG 145

Query: 141 MQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           MQLDYSDALIGGGFSF NPNATQTCGCGKSFAAEM
Sbjct: 146 MQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 180

[Close]

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot
Match: P72731 (Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1417 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.5e-36
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           A  I L+D ALKH   ++ ++ +DLCLR+GVRQGGCSGMSY M+FE    A   D + +Y
Sbjct: 9   AKGIQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRATEHDEVFDY 68

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 169
            GF I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA QTCGCGKSF
Sbjct: 69  EGFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTCGCGKSF 116

[Close]

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot
Match: P51217 (Uncharacterized protein ycf83 OS=Porphyra purpurea OX=2787 GN=ycf83 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-32
Identity = 58/106 (54.72%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 64  ISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGF 123
           I+LT+ A +    +++  + ++CLRIGV+QGGCSGMSY+M FE+ ++ R  D ++  + F
Sbjct: 8   ITLTEPAARQIKILKSNFDNEVCLRIGVKQGGCSGMSYSMNFESVSSLRETDEVLMLDSF 67

Query: 124 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 170
           ++ CDPKSLL+L+G+ LDYS  LIGGGF F NPNA+QTCGCGKSF+
Sbjct: 68  LVACDPKSLLYLYGLSLDYSSELIGGGFQFSNPNASQTCGCGKSFS 113

[Close]

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot
Match: Q1XDR9 (Uncharacterized protein ycf83 OS=Pyropia yezoensis OX=2788 GN=ycf83 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 58  EGIAPAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSI 117
           EG    I++T  ALK    ++ +   D+ LRIGVRQGGCSGMSY+M FE+    +  D  
Sbjct: 2   EGNMGFITITKPALKQIAILKNDHENDVHLRIGVRQGGCSGMSYSMNFEHVDKLKDTDER 61

Query: 118 IEYNGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 170
           +  + F +VCDPKSLL+L+G+ LD+S  LIGGGF F NPNA+QTCGCGKSF+
Sbjct: 62  LRLDNFSVVCDPKSLLYLYGLSLDFSSELIGGGFQFSNPNASQTCGCGKSFS 113

[Close]

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot
Match: Q9MSA1 (Uncharacterized protein ycf83 OS=Galdieria sulphuraria OX=130081 GN=ycf83 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 64  ISLTDNALKHFNKMRTERNED-LCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNG 123
           I++T +AL H N +    +ED L +RIG++QGGCSG+SY M +E ++N   +D + +Y+ 
Sbjct: 6   INITKSALDHLNSISKLNSEDKLYIRIGIKQGGCSGLSYFMTYEKKSNISDNDLVYDYDN 65

Query: 124 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 170
           F +VCD KS+L+L+G+ LDYS +LI GGF F NPNA QTCGCGKSF+
Sbjct: 66  FTLVCDNKSILYLYGISLDYSSSLIDGGFKFLNPNAKQTCGCGKSFS 112

[Close]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL
Match: A0A6J1HDZ4 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111463122 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.6e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI
Sbjct: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL
Match: A0A6J1KXS8 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497309 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPT+ISHRNSLSIRSVSV AAPASEGI
Sbjct: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTKISHRNSLSIRSVSVLAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL
Match: A0A6J1GEF0 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453419 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.8e-83
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSS+ MKCP VLHLR LPKSSA +SSISF Y PT+ S R +LSIRSVSVPAAPASEGI
Sbjct: 1   MAFSSITMKCPPVLHLRALPKSSAPQSSISFRYSPTKFSRRKTLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKH NKMR+ERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHLNKMRSERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL
Match: A0A6J1ISS5 (iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478089 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.1e-82
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSS+ MKCP VLHLR LPKSSA +SSISF Y PT+ S R +LSIRSVSVPAAPASEGI
Sbjct: 1   MAFSSITMKCPPVLHLRALPKSSAPQSSISFRYSPTKFSRRKTLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKH NKMR+ERNEDLCLRIGVRQGGCSGMSYTMEFENR NARPDDSIIEY
Sbjct: 61  APAISLTDNALKHLNKMRSERNEDLCLRIGVRQGGCSGMSYTMEFENRENARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           N FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NEFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL
Match: A0A1S3B105 (iron-sulfur assembly protein IscA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484688 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 152/172 (88.37%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSS+ MK P VLHLR LPKSSA +SSISF + PT+ S   SLSIRSVSVPAAPASE I
Sbjct: 1   MAFSSITMKFPPVLHLRALPKSSAPQSSISFRFSPTKFSRSKSLSIRSVSVPAAPASESI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKH NKMR+ER+EDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHLNKMRSERDEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF AEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFNAEM 172

[Close]

BLAST of CmoCh07G007820 vs. NCBI nr
Match: XP_022962711.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 5.3e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI
Sbjct: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. NCBI nr
Match: KAG6595092.1 (Iron-sulfur assembly protein IscA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.5 bits (885), Expect = 2.6e-91
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFS VPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI
Sbjct: 1   MAFSLVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. NCBI nr
Match: XP_023517361.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPT+ISHRNSLSIRSV+VPAAP SEGI
Sbjct: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTKISHRNSLSIRSVTVPAAPTSEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. NCBI nr
Match: XP_023003843.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.2e-90
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPT+ISHRNSLSIRSVSV AAPASEGI
Sbjct: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTKISHRNSLSIRSVSVLAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. NCBI nr
Match: XP_022950286.1 (iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita moschata] >XP_023544833.1 iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6604246.1 Iron-sulfur assembly protein IscA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.8 bits (813), Expect = 5.9e-83
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MAFSSVPMKCPSVLHLRVLPKSSAKRSSISFPYLPTEISHRNSLSIRSVSVPAAPASEGI 60
           MAFSS+ MKCP VLHLR LPKSSA +SSISF Y PT+ S R +LSIRSVSVPAAPASEGI
Sbjct: 1   MAFSSITMKCPPVLHLRALPKSSAPQSSISFRYSPTKFSRRKTLSIRSVSVPAAPASEGI 60

Query: 61  APAISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120
           APAISLTDNALKH NKMR+ERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY
Sbjct: 61  APAISLTDNALKHLNKMRSERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEY 120

Query: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 121 NGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 172

[Close]

BLAST of CmoCh07G007820 vs. TAIR 10
Match: AT1G10500.1 (chloroplast-localized ISCA-like protein )

HSP 1 Score: 247.7 bits (631), Expect = 6.9e-66
Identity = 120/155 (77.42%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 21  KSSAKRSSISFP---YLPTEISHRNSLSIRSVSVPAAPASEGIAPAISLTDNALKHFNKM 80
           +S    +SISFP   Y+   ++ RN LS+RS SVPAAPA EG+ PAISL++NALKH +KM
Sbjct: 26  RSVVSCNSISFPSLSYVNLNLNRRNRLSVRSASVPAAPAMEGLKPAISLSENALKHLSKM 85

Query: 81  RTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGFVIVCDPKSLLFLFG 140
           R+ER EDLCLRIGV+QGGCSGMSYTM+FENRANARPDDS IEY GF IVCDPKS+LFLFG
Sbjct: 86  RSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFG 145

Query: 141 MQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173
           MQLDYSDALIGGGFSF NPNATQTCGCGKSFAAEM
Sbjct: 146 MQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 180

[Close]

BLAST of CmoCh07G007820 vs. TAIR 10
Match: AT5G03905.1 (Iron-sulphur cluster biosynthesis family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 32  PYLPTEI--SHRNSLSIRSVSVPAAPASEGIAP------AISLTDNALKHFNKMRTERNE 91
           PYL   I  +HR      + ++  A +S    P       + L+DN ++   ++++   E
Sbjct: 11  PYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSNDVVHLSDNCIRRMKELQSSEPE 70

Query: 92  DLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGFVIVCDPKSLLFLFGMQLDYS 151
              LR+GV  GGCSG  Y  E +NR N  PDD + E NG  +V D  S   + G  +DY 
Sbjct: 71  KKMLRLGVETGGCSGFQYKFELDNRTN--PDDRVFEKNGVKLVVDNVSYDLVKGATIDYE 130

Query: 152 DALIGGGFSFK-NPNATQTCGCGKSFAAEM 173
           + LI   F    NP+A   C C  SF  ++
Sbjct: 131 EELIRAAFVVAVNPSAVGGCSCKSSFMVKL 158

[Close]

BLAST of CmoCh07G007820 vs. TAIR 10
Match: AT2G36260.1 (Iron-sulphur cluster biosynthesis family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 34/105 (32.38%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 64  ISLTDNALKHFNKMRTERNEDLCLRIGVRQGGCSGMSYTMEFENRANARPDDSIIEYNGF 123
           ++L+D A     ++   + +   LR+ V   GC+G+SY + +         D ++E  G 
Sbjct: 6   LALSDTAAARIRQLLQHQQKPF-LRLAVEAKGCNGLSYVLNYAQEKG--KFDEVVEEKGV 65

Query: 124 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 169
            I+ DPK+++ + G ++D+ D  +   F F NPNAT+ CGCG+SF
Sbjct: 66  KILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNATK-CGCGESF 106

The following BLAST results are available for this feature:

BLAST of CmoCh07G007820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIK3	9.7e-65	77.42	Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P72731	9.5e-36	62.04	Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
P51217	8.3e-32	54.72	Uncharacterized protein ycf83 OS=Porphyra purpurea OX=2787 GN=ycf83 PE=3 SV=1	[more]
Q1XDR9	2.1e-30	54.46	Uncharacterized protein ycf83 OS=Pyropia yezoensis OX=2788 GN=ycf83 PE=3 SV=1	[more]
Q9MSA1	1.7e-29	53.27	Uncharacterized protein ycf83 OS=Galdieria sulphuraria OX=130081 GN=ycf83 PE=3 S...	[more]

BLAST of CmoCh07G007820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDZ4	2.6e-92	100.00	iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1KXS8	1.1e-90	98.84	iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1GEF0	2.8e-83	91.28	iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1ISS5	9.1e-82	90.12	iron-sulfur assembly protein IscA, chloroplastic-like OS=Cucurbita maxima OX=366...	[more]
A0A1S3B105	3.2e-79	88.37	iron-sulfur assembly protein IscA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmoCh07G007820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962711.1	5.3e-92	100.00	iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita moschata]	[more]
KAG6595092.1	2.6e-91	99.42	Iron-sulfur assembly protein IscA, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_023517361.1	1.0e-90	98.26	iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_023003843.1	2.2e-90	98.84	iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita maxima]	[more]
XP_022950286.1	5.9e-83	91.28	iron-sulfur assembly protein IscA, chloroplastic-like [Cucurbita moschata] >XP_0...	[more]

BLAST of CmoCh07G007820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10500.1	6.9e-66	77.42	chloroplast-localized ISCA-like protein	[more]
AT5G03905.1	3.3e-15	32.67	Iron-sulphur cluster biosynthesis family protein	[more]
AT2G36260.1	2.6e-12	32.38	Iron-sulphur cluster biosynthesis family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016092	FeS cluster insertion protein	TIGRFAM	TIGR00049	TIGR00049	coord: 64..169 e-value: 1.2E-36 score: 123.1
IPR000361	FeS cluster biogenesis	PFAM	PF01521	Fe-S_biosyn	coord: 64..166 e-value: 2.5E-21 score: 76.0
IPR035903	HesB-like domain superfamily	GENE3D	2.60.300.12		coord: 63..171 e-value: 5.1E-35 score: 121.9
IPR035903	HesB-like domain superfamily	SUPERFAMILY	89360	HesB-like domain	coord: 63..159
None	No IPR available	PANTHER	PTHR47265:SF1	IRON-SULFUR ASSEMBLY PROTEIN ISCA, CHLOROPLASTIC	coord: 1..172
IPR031108	FeS assembly protein IscA, plant/cyanobacteria type	PANTHER	PTHR47265	IRON-SULFUR ASSEMBLY PROTEIN ISCA, CHLOROPLASTIC	coord: 1..172
IPR017870	FeS cluster insertion, C-terminal, conserved site	PROSITE	PS01152	HESB	coord: 151..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G007820.1	CmoCh07G007820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0030674	protein-macromolecule adaptor activity