CmoCh07G006900 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G006900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MRG domain-containing protein
Location	Cmo_Chr07: 3115448 .. 3115852 (+)
RNA-Seq Expression	CmoCh07G006900
Synteny	CmoCh07G006900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGGTGTTAGAGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA

mRNA sequence

ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA

Coding sequence (CDS)

ATGAAAAAAACATCCGGCGATGGCAGTTCCCGCTCTATTCCGCACTCGTTAGAGCGCCACGCGACCTCACGAAGAAGGACCCGACACTCGTGTTTGGCTGGTTCATTTGCCATCTCTGGAATGGTAAACTCATCCAAGGACGACGCAGCCACCGACGGCGACATGTCCAGCGGTGGTTCTCCACCCTCCAATTCAAGCCTTTACTCCGAAGGAGAGAAGGTCCTTGCCTATCACGGCCCTCGCATCTATGAAGCCAAGGTACATCTCTTTTTACGCTCTTGTTTACGATTTGCCTTTGGATTTCTGTTTAAAATTCTCCGAAGCATTGAATTGTTAGCTCGCCTTTCGGTTGGCGCATCTGGTTTAGAGAGGAAAAGGGGGATAATGCTTGTGTAA

Protein sequence

MKKTSGDGSSRSIPHSLERHATSRRRTRHSCLAGSFAISGMVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKVHLFLRSCLRFAFGFLFKILRSIELLARLSVGASGLERKRGIMLV

Homology

[Close]

BLAST of CmoCh07G006900 vs. ExPASy Swiss-Prot
Match: Q94C32 (Protein MRG1 OS=Arabidopsis thaliana OX=3702 GN=MRG1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSS-LYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ A+DGD +SGG+ PSN   L+SEGE+VLAYHGPR+Y AKV
Sbjct: 1  MGSSSKEETASDGDTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKV 48

[Close]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL
Match: A0A6J1HH91 (protein MRG1-like OS=Cucurbita moschata OX=3662 GN=LOC111463527 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.1e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL
Match: A0A6J1KPL7 (protein MRG1-like OS=Cucurbita maxima OX=3661 GN=LOC111497133 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNS KDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSFKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL
Match: A0A5D3CNW9 (Protein MRG1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004500 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL
Match: A0A1S3B0U2 (protein MRG1 OS=Cucumis melo OX=3656 GN=LOC103484807 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSG SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL
Match: A0A6J1BTF5 (protein MRG1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005555 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.6e-15
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDD ATDGDMSSG SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDTATDGDMSSGDSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. NCBI nr
Match: KAG7034319.1 (Protein MRG1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 68/89 (76.40%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 2  KKTSGDGSSRSIPHSLERHATSRRRTRHSCLAGSFAI---SGMVNSSKDDAATDGDMSSG 61
          +K  GDGSSRSIPHS ERHATSR   R   LA S A+   S MVNSSKDD AT+GDMS G
Sbjct: 2  RKNRGDGSSRSIPHSSERHATSRGSGRPWYLAASLAVSQCSRMVNSSKDDTATNGDMSIG 61

Query: 62 GSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
           SPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 62 DSPPSNSSLYSEGEKVLAYHGPRIYEAKV 90

[Close]

BLAST of CmoCh07G006900 vs. NCBI nr
Match: KAG6595009.1 (Protein MRG1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. NCBI nr
Match: KAG7027037.1 (Protein MRG1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. NCBI nr
Match: XP_022963263.1 (protein MRG1-like [Cucurbita moschata] >XP_023517498.1 protein MRG1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. NCBI nr
Match: XP_023003571.1 (protein MRG1-like [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 88
          MVNS KDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV
Sbjct: 1  MVNSFKDDAATDGDMSSGGSPPSNSSLYSEGEKVLAYHGPRIYEAKV 47

[Close]

BLAST of CmoCh07G006900 vs. TAIR 10
Match: AT4G37280.1 (MRG family protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 41 MVNSSKDDAATDGDMSSGGSPPSNSS-LYSEGEKVLAYHGPRIYEAKV 88
          M +SSK++ A+DGD +SGG+ PSN   L+SEGE+VLAYHGPR+Y AKV
Sbjct: 1  MGSSSKEETASDGDTASGGASPSNDGRLFSEGERVLAYHGPRVYGAKV 48

The following BLAST results are available for this feature:

BLAST of CmoCh07G006900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C32	5.8e-09	64.58	Protein MRG1 OS=Arabidopsis thaliana OX=3702 GN=MRG1 PE=1 SV=1	[more]

BLAST of CmoCh07G006900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH91	5.1e-16	100.00	protein MRG1-like OS=Cucurbita moschata OX=3662 GN=LOC111463527 PE=4 SV=1	[more]
A0A6J1KPL7	2.5e-15	97.87	protein MRG1-like OS=Cucurbita maxima OX=3661 GN=LOC111497133 PE=4 SV=1	[more]
A0A5D3CNW9	3.3e-15	97.87	Protein MRG1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004500 ...	[more]
A0A1S3B0U2	3.3e-15	97.87	protein MRG1 OS=Cucumis melo OX=3656 GN=LOC103484807 PE=4 SV=1	[more]
A0A6J1BTF5	9.6e-15	95.74	protein MRG1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005555 PE=4 SV=1	[more]

BLAST of CmoCh07G006900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034319.1	2.3e-23	76.40	Protein MRG1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595009.1	1.0e-15	100.00	Protein MRG1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7027037.1	1.0e-15	100.00	Protein MRG1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022963263.1	1.0e-15	100.00	protein MRG1-like [Cucurbita moschata] >XP_023517498.1 protein MRG1-like [Cucurb...	[more]
XP_023003571.1	5.2e-15	97.87	protein MRG1-like [Cucurbita maxima]	[more]

BLAST of CmoCh07G006900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37280.1	4.1e-10	64.58	MRG family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 62..91 e-value: 5.1E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G006900.1	CmoCh07G006900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus