CmoCh07G006790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G006790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr07: 3062104 .. 3063729 (-)
RNA-Seq Expression	CmoCh07G006790
Synteny	CmoCh07G006790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGTGCGTTTCACACGTGTGGTCAAATGCCTTGCCGTGATACTATTGGTTGAGTGCGGTGACGTGTACTGGAAAAACGACAACATGCCCTACGGTTTTGTTTTTCTTAAAAAAAAAAAATTAAAAGAAGAAAGGGTTTGTATTTTGATTAGTTTTTTTGGCCAACAATACACGACACAACTTAATCTTTTTAAAAGTCTCCAATTTTTTCTTTAATAATTTAACATTTTTTAATGAAGTTCTGTCATAATTTCTTTTCCATAACTTTGTTAGATAATTAAATTTATTATTCTAATCTAATTCCGAGATATTAAAAAAACAACTAATTTGAACATAAATTATTACTTCGAGAGTTCATGCTTAAAGTATACAATATCATACTATTGTAAAGGTTCATAATTGTTGGGAGTGACTAATTTAAGTAATGATCATGGGTCCGTGATTTCTAACACTGTTCACTCCCTTTTCGCCATGATTGAAGTCATCCCCTCCATTTTTCGACCGAATCTTTTCGTTAAGATCATTTAGGTTTTTTAGAAGCTTATTTTAAAGCTTCAACTATATACCAATTCAAGTTTTAAATTTATATTAACAAAAATATTCAATGTTTTTTTTTACATTTGAGTTTCAATAAGAAATATTTTCTAATATGGTCATGTCATTTCAAAAGGCTCGAGTATTATTGGTTAATTCACCATACTAGTTCTAAGTAATCCAAAACATTGATTTTATTTTTATTTTTTAAGAAAATATTTCAAAAATAATTTAAAATTATCATAATTTTTTTTTTGAAGTAAATGTAGACTTTTTAAATTTAAACTATAATCTAACTGATTTGGGATTTCAATTGAAAATATCTGATCTAAAATTTAAAAAACTTAATTATATCATATTAAATCTAATTTACTCATACTAAATTTCCAGCAACATCAATTTAATAACATAATGATTATAAAAATAATTTTTCATTCGGGCGTTGCACTTTAAGAATTTAAAGACTTATAAGGGCATAAAAGATATTTATATTTTTAAAATGGGAATTTTTCCAAAGGGAAAACATTTAGAGGGAGAGAGACTAACGACGAAGAACGCGGGAGGGTGACCGAGAGAGAGATCGACGAACGCAGAGTGGAAGGGTAAAGAGATCGAGACTGAAGACGGGCAATTGCAAGCTATGAACCCTAATTTGAGAGTTTGAGTGCGCCGTCGAGGGGGGAGAGCGTGCAAGTCTCTTTGGCTGAGCTGATTAATTGAGTGCCCTAAAACACCAATTCTTATCGTTTTTCCACTTGACGATAATTTCAGGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

mRNA sequence

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

Coding sequence (CDS)

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

Protein sequence

MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRSGERETPMGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD

Homology

[Close]

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL
Match: A0A6J1KVJ8 (uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL
Match: A0A6J1HHR2 (uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC111463630 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL
Match: A0A5D3CR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004310 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL
Match: A0A1S3B1N0 (uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL
Match: A0A6J1BSM8 (uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005345 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.1e-20
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI GTV GIYVAQNY+VPNIRKLANTG+++AKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of CmoCh07G006790 vs. NCBI nr
Match: KAG6594998.1 (hypothetical protein SDJN03_11551, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 7.4e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRSGERETPMGFIRSSFSF 60
           MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRSGERETPMGFIRSSFSF
Sbjct: 1   MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRSGERETPMGFIRSSFSF 60

Query: 61  IVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           IVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Sbjct: 61  IVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 107

[Close]

BLAST of CmoCh07G006790 vs. NCBI nr
Match: KAG7026954.1 (hypothetical protein SDJN02_10962, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.8 bits (525), Expect = 9.0e-50
Identity = 106/113 (93.81%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVR------SGERETPMGFI 60
           MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVR      SGERETPMGF+
Sbjct: 1   MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRAFHTCGSGERETPMGFV 60

Query: 61  RSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           RSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Sbjct: 61  RSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 113

[Close]

BLAST of CmoCh07G006790 vs. NCBI nr
Match: XP_022963418.1 (uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_022963419.1 uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_023003118.1 uncharacterized protein LOC111496825 [Cucurbita maxima] >XP_023003120.1 uncharacterized protein LOC111496825 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of CmoCh07G006790 vs. NCBI nr
Match: XP_023518887.1 (uncharacterized protein LOC111782272 [Cucurbita pepo subsp. pepo] >XP_023518888.1 uncharacterized protein LOC111782272 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMA+HIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAQHIEENYRKPKKREDDD 57

[Close]

BLAST of CmoCh07G006790 vs. NCBI nr
Match: XP_038882750.1 (uncharacterized protein LOC120073907 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI GTVFGIY+AQNY+VPNIRKLANTG++MAKHIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFITGTVFGIYLAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of CmoCh07G006790 vs. TAIR 10
Match: AT2G35736.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKK 103
           MG  RS FSFI G+VFG+Y+AQNY+VPNIRKL NTG+++AKH+EENYRKPKK
Sbjct: 1   MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of CmoCh07G006790 vs. TAIR 10
Match: AT2G35736.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). )

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKK 103
           MG  RS FSFI G+VFG+Y+AQNY+VPNIRKL NTG+++AKH+EENYRKPKK
Sbjct: 1   MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of CmoCh07G006790 vs. TAIR 10
Match: AT4G25225.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKRED 106
           MG IRSSFSFI+GTV GIY+AQ Y+VPNI+KL +  + MAK +EE YRKPK R+D
Sbjct: 1   MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

The following BLAST results are available for this feature:

BLAST of CmoCh07G006790 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G006790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVJ8	1.0e-22	100.00	uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825...	[more]
A0A6J1HHR2	1.0e-22	100.00	uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC1114636...	[more]
A0A5D3CR66	2.8e-20	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B1N0	2.8e-20	89.47	uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=...	[more]
A0A6J1BSM8	8.1e-20	87.72	uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of CmoCh07G006790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594998.1	7.4e-52	100.00	hypothetical protein SDJN03_11551, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026954.1	9.0e-50	93.81	hypothetical protein SDJN02_10962, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022963418.1	2.1e-22	100.00	uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_022963419.1 unchar...	[more]
XP_023518887.1	6.1e-22	98.25	uncharacterized protein LOC111782272 [Cucurbita pepo subsp. pepo] >XP_023518888....	[more]
XP_038882750.1	1.2e-20	91.23	uncharacterized protein LOC120073907 [Benincasa hispida]	[more]

BLAST of CmoCh07G006790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35736.1	2.0e-18	75.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35736.2	2.0e-18	75.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25225.1	9.1e-16	67.27	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027854	Short transmembrane mitochondrial protein 1	PFAM	PF15054	DUF4535	coord: 56..100 e-value: 7.2E-23 score: 80.1
None	No IPR available	PANTHER	PTHR33528:SF14	OS07G0239500 PROTEIN	coord: 51..107
None	No IPR available	PANTHER	PTHR33528	OS07G0239500 PROTEIN	coord: 51..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G006790.1	CmoCh07G006790.1	mRNA