CmoCh07G006730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G006730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SERF family protein
Location	Cmo_Chr07: 3044952 .. 3046566 (-)
RNA-Seq Expression	CmoCh07G006730
Synteny	CmoCh07G006730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCGAGATAAGAGATAGGAGAAAAGGAAGAGAATTTTGGAGGGACAGAGCAAAGTATATTCGAGTCCGCACCAGCATCGGGCCCATGATGCTATCGATCGTTTCAAAAGCAGGGCGTTGTAATTGAGCCCTTTCACCAACCGGGAGCGACGATCAGGCCGCTGCTGTTTACTGACGCCACTTTGTAATCATTGCCGAAACCACGAGCTCACGATCGTGTATGAATTTTAAATTTCGGCGCTACAAAATAAATAATTCATTTCGAATTTGATAACAAAATAAAAAATGTTTAAATTTTTAATAGAATATATATAAATTTAAGGTTAAAATTATTAGAATATTAAATTTATGGATTAAATAGATGCAAATTACGTTTTAAAATTAAATTTGTAATTTAATTGGGTGACGTTTATCCGGGTGATTTGATCAATATGCACGTGACAGCTACAGCTATAAGATGAACGCACCACATTATATTTGCGCCTTCCGTGTTTCGACCCCTTCCAAGCGAAGACGCTATCTTCCAAGAATTAGGGCTACTCGTGAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTCTCTATAACTTTTCGCCTTTATTTCTTTTTCGGATTACTTTTACTGGTTTCTGAGTGAATTTCTTGAACTCTGTATAGTTATTTTGTTCTTGATATTTATTAAGCGGCGGCTCTGTTAGGGTGTGAAATCACTTAAATTGATTATCGTGCGAGAGAGAGAGCTATTGAGTTGATTTTATTAATCGGTTATTCGGGTTAAATTTGAAGATTTTGTTTGGTCTGTTGTTATCAGGAAGTCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGGTATGTTTTGACAATGTTTGATGCTAATTTGTATGAAGATAGCTGAATTAGTTCTTATATTGATGCTAATTTATATGCCATGTCGTCTTTTGTTTGTGTTTATAGGAATTGTTTCTTTTTTCTTCCGCTTGTACATTAGTTTCTTGCTTATTTTGTACAGTTCGATGTTTCAGAATTGTTTTTTTTCTTTTTCTTTTGAGCCACATTTACACATTCAATAGAAGAGTTTCTTCGATTCGATGGTCAGGGTACCTTGTATGTGAATGGAAGGATGGCGTCCAATTATTAAGTATCTTAAAAAATCAGGGTACCTTGTATGTGAATGGAAGGATGGTCAGGGTACTTATCATTAGTGTTGTAGACTATGAATTTTGTATCTGTAAAGCCTGCGATTTTCTGAGCCCTATGTTATTCTTGCACGTAGAGAATTCAAAAGAATGTTATAGGCAGTGGGTGCTATTGTTTTATGACATTTACTCTTGATTTGTTCTTTATTAAGAACATTTACTCTGATTTGTTTCTTTGGTAAGAACATTTACTCTGATTTGTTTCTTTGGTAAGAACATTTCCTATGAAACTGATTGCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCAAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

mRNA sequence

ATGAAGATCGAGATAAGAGATAGGAGAAAAGGAAGAGAATTTTGGAGGGACAGAGCAAACGAAGACGCTATCTTCCAAGAATTAGGGCTACTCGTGAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGAAGTCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCAAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Coding sequence (CDS)

ATGAAGATCGAGATAAGAGATAGGAGAAAAGGAAGAGAATTTTGGAGGGACAGAGCAAACGAAGACGCTATCTTCCAAGAATTAGGGCTACTCGTGAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGAAGTCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCAAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Protein sequence

MKIEIRDRRKGREFWRDRANEDAIFQELGLLVKMGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVYTCFPHLKK

Homology

[Close]

BLAST of CmoCh07G006730 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-30
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKAS-KGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 93
           MGGGN QK+ MAR KN+EK KA+ KGSQLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1   MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 94  EAKHPKADVYTCFPHLKK 111
           EAKHPKADV  CFPHLKK
Sbjct: 61  EAKHPKADVVACFPHLKK 78

[Close]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL
Match: A0A6J1KLS2 (uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL
Match: A0A6J1HF74 (uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL
Match: A0A6J1BUU7 (uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPK+DVYTCFPHLKK
Sbjct: 61  AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL
Match: A0A6I9SXS1 (uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMARE+N+EK+KA+KGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL
Match: A0A7J0GH88 (Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g0007780 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKN+EK KA+KGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNLEKSKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVY CFPHLKK
Sbjct: 61  AKHPKADVYACFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. NCBI nr
Match: XP_022963417.1 (uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharacterized protein At2g23090 [Cucurbita maxima] >XP_023517196.1 uncharacterized protein At2g23090 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. NCBI nr
Match: KAG6594993.1 (hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. NCBI nr
Match: XP_022133290.1 (uncharacterized protein At2g23090 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 5.5e-34
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPK+DVYTCFPHLKK
Sbjct: 61  AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. NCBI nr
Match: XP_011074376.1 (uncharacterized protein At2g23090 [Sesamum indicum])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQKAKMARE+N+EK+KA+KGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPKADVYTCFPHLKK
Sbjct: 61  AKHPKADVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. NCBI nr
Match: XP_038882025.1 (uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacterized protein At2g23090 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 93
           MGGGNGQK+KMAREKNMEKLKASKGSQLE+NKKAMSIQCKVCMQTFICTT+EVKCREHAE
Sbjct: 1   MGGGNGQKSKMAREKNMEKLKASKGSQLEANKKAMSIQCKVCMQTFICTTTEVKCREHAE 60

Query: 94  AKHPKADVYTCFPHLKK 111
           AKHPK+DVYTCFPHLKK
Sbjct: 61  AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of CmoCh07G006730 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 133.7 bits (335), Expect = 9.3e-32
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 34  MGGGNGQKAKMAREKNMEKLKAS-KGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 93
           MGGGN QK+ MAR KN+EK KA+ KGSQLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1   MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 94  EAKHPKADVYTCFPHLKK 111
           EAKHPKADV  CFPHLKK
Sbjct: 61  EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:

BLAST of CmoCh07G006730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	1.3e-30	85.90	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of CmoCh07G006730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLS2	5.3e-35	100.00	uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE...	[more]
A0A6J1HF74	5.3e-35	100.00	uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 ...	[more]
A0A6J1BUU7	2.7e-34	97.40	uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911...	[more]
A0A6I9SXS1	1.0e-33	94.81	uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=...	[more]
A0A7J0GH88	5.0e-33	94.81	Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g000778...	[more]

BLAST of CmoCh07G006730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963417.1	1.1e-34	100.00	uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharact...	[more]
KAG6594993.1	3.2e-34	98.70	hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022133290.1	5.5e-34	97.40	uncharacterized protein At2g23090 [Momordica charantia]	[more]
XP_011074376.1	2.1e-33	94.81	uncharacterized protein At2g23090 [Sesamum indicum]	[more]
XP_038882025.1	2.7e-33	94.81	uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacte...	[more]

BLAST of CmoCh07G006730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	9.3e-32	85.90	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 30..110 e-value: 2.3E-34 score: 119.6
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 71..108 e-value: 2.0E-20 score: 72.6
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 36..68 e-value: 1.1E-5 score: 26.2
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 34..110
None	No IPR available	PANTHER	PTHR33788:SF14	SUBFAMILY NOT NAMED	coord: 34..110
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 32..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G006730.1	CmoCh07G006730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane