CmoCh07G004820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G004820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 2200299 .. 2201549 (+)
RNA-Seq ExpressionCmoCh07G004820
SyntenyCmoCh07G004820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTTCGTTCTACATATCTCGATGCAAATTACATGATTATTCTCATCATAAATTCTTCAATTGCAGTATTGTTTAATGGATTCGCTCATGCGTTTGAGGATCATTTTATTTCATTTTATTTTACCAAAGGAATAGGCTGCAATCATTTACTAATTACGAAACTATATTTTAGTACACTTACGAATGGATTAAAAATACTTAGAAACTGAGATCTGAGGAACTGGCTCAAGAACAATCATGGAGATTATTCACGAAATTTTTATCAAATCGTAAGAATCGTTTATCAGGTCTTATAAAACTAGGGTTTAAGACGTAAAAAATTAAGGTTTTGTGTCTATTAACTAGGGTTTAAGGCATAAATTGTTTTTGCATAATTGTGCTTGTTTACGTTACTTGAAAGTTGTTATGGAAGTAATGATTAACGATTTGATTGATCTTTCCAGCAGGAAAAGTTTGTGCTCCCAAACTGTTGCAAGAAAATGGAAATTTCTTGTGGTTCTAGTGGTTTTTATTTTATAATTGTTTATTATTCCGTCCGTTGGGGATATTTGTTTTCCTTTTGTCGCTTTCCGAAGGTCTCAAAAGCAGATTGGAGAGCGAGGGCTCAATCTCATTATACGGTGGGCGGTGGATAAAGCTGAGGAGATGGTGCCGCCGCAGCGAGGACAGAGAAAAAAGTTGAAATTGCTGCAGCAGCTGCTGTTGCTGGTGTGGAAAAGACATGAAAATTCAAAAGAAGTATGCTCCCGAAAGGTCAGAATGACTTCTAATAAAGCTGTAAATGCATTAATATGATGGTTGCCTGTCAGAACTCAGCAGTAGTGCCGCTTGGTAAAGTTGAAGCATCCCCATTTCTTGAAGCCTAACCCCATTTCACTAACTTCCCAGCTTGTCTCCAACGCTCTGGAGAGTGCCAGACGCCCTAGAGACGTCGGGTATGGGCTATTGATTTCAGGTAAGATTTCTTGCTCATTATTATTTGTATTTGTAACGTGTTTTTCTAAAGCATGATTGATCTAGTAAATTCATTTATTTTACTGCTGCAGAGACAAACTCGGTAAGAAATGGGATTAGCCCATTGAAATTTCCCCCAGCTTTCACGTATGCGTACGTTAGATGCCTGTAATAAGAGAAGATCTGAACAATTGCTCTTCCATTTTGTAGCAAACTATATGGAGCAATGCCATAGATGGAAGCATTCAAAAGCTTGTCATCTGGAGACCGCTTTAGATGATTCATTGACGTAA

mRNA sequence

ATGCGAGTTCGTTCTACATATCTCGATGCAAATTACATGATTATTCTCATCATAAATTCTTCAATTGCAGTATTGTTTAATGGATTCGCTCATGCGTTTGAGGATCATTTTATTTCATTTTATTTTACCAAAGGAATAGGCTGCAATCATTTACTAATTACGAAACTATATTTTAGAAAAGTTTGTGCTCCCAAACTGTTGCAAGAAAATGGAAATTTCTTGTGGTCTCAAAAGCAGATTGGAGAGCGAGGGCTCAATCTCATTATACGGTGGGCGGTGGATAAAGCTGAGGAGATGGTGCCGCCGCAGCGAGGACAGAGAAAAAAGTTGAAATTGCTGCAGCAGCTGCTGTTGCTGGTGTGGAAAAGACATGAAAATTCAAAAGAAGTATGCTCCCGAAAGCTTGTCTCCAACGCTCTGGAGAGTGCCAGACGCCCTAGAGACGTCGGGTATGGGCTATTGATTTCAGCAAACTATATGGAGCAATGCCATAGATGGAAGCATTCAAAAGCTTGTCATCTGGAGACCGCTTTAGATGATTCATTGACGTAA

Coding sequence (CDS)

ATGCGAGTTCGTTCTACATATCTCGATGCAAATTACATGATTATTCTCATCATAAATTCTTCAATTGCAGTATTGTTTAATGGATTCGCTCATGCGTTTGAGGATCATTTTATTTCATTTTATTTTACCAAAGGAATAGGCTGCAATCATTTACTAATTACGAAACTATATTTTAGAAAAGTTTGTGCTCCCAAACTGTTGCAAGAAAATGGAAATTTCTTGTGGTCTCAAAAGCAGATTGGAGAGCGAGGGCTCAATCTCATTATACGGTGGGCGGTGGATAAAGCTGAGGAGATGGTGCCGCCGCAGCGAGGACAGAGAAAAAAGTTGAAATTGCTGCAGCAGCTGCTGTTGCTGGTGTGGAAAAGACATGAAAATTCAAAAGAAGTATGCTCCCGAAAGCTTGTCTCCAACGCTCTGGAGAGTGCCAGACGCCCTAGAGACGTCGGGTATGGGCTATTGATTTCAGCAAACTATATGGAGCAATGCCATAGATGGAAGCATTCAAAAGCTTGTCATCTGGAGACCGCTTTAGATGATTCATTGACGTAA

Protein sequence

MRVRSTYLDANYMIILIINSSIAVLFNGFAHAFEDHFISFYFTKGIGCNHLLITKLYFRKVCAPKLLQENGNFLWSQKQIGERGLNLIIRWAVDKAEEMVPPQRGQRKKLKLLQQLLLLVWKRHENSKEVCSRKLVSNALESARRPRDVGYGLLISANYMEQCHRWKHSKACHLETALDDSLT
Homology
[Close]
BLAST of CmoCh07G004820 vs. NCBI nr
Match: KAG6594824.1 (hypothetical protein SDJN03_11377, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 7.0e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 107 RKKLKLLQQLLLLVWKRHENSKEVCSRKLVSNALESARRPRDVGYGLLISANYMEQCHRW 166
           RKKLKLLQQLLLLVWKRH+NSKEVCSRKLVSN LESARRPRDVGYGLLIS+NYMEQCHRW
Sbjct: 78  RKKLKLLQQLLLLVWKRHQNSKEVCSRKLVSNTLESARRPRDVGYGLLISSNYMEQCHRW 137

Query: 167 KHSKACHLETALDDSLT 184
           KHSKACHLETALDDSLT
Sbjct: 138 KHSKACHLETALDDSLT 154

The following BLAST results are available for this feature:
BLAST of CmoCh07G004820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G004820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G004820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594824.17.0e-3496.10hypothetical protein SDJN03_11377, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh07G004820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G004820.1CmoCh07G004820.1mRNA