CmoCh07G003960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G003960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine-rich splicing factor SR45a-like
Location	Cmo_Chr07: 1803241 .. 1805115 (-)
RNA-Seq Expression	CmoCh07G003960
Synteny	CmoCh07G003960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAATACGAAATTTTTTTTCTCACGAATCCCAAAGGTCGCACAAGCCACGACGGCGATTTGCGACCGCTGCGGCTCGTGGAGAAGCCGTCCTCAGAAACCCTAAAATTCGTGTTTTGTATCTGTGTTTTTCGTTAGCTGTTTGCCTTTTGATTTCATTGCGGAAATGGTAAGTTTTTGTTTTCTTTCCCCCGTTTCTATTAATCTTTATCTGTTTATCGTTGTTTTTGTTTGATCTATTGAATATTTAATAATCGAATGCTGCTGATTCGTTGCAGGCTGATTCTCATCGCAAAAGGTGAGCTTAAATGCTTTCTGTTGAAATGATTTGTTTTTCTTACGATTGACGATCTCGGGGGTTTTCTGGACCTAGGGCACATGGATGATTTGTGTCGCAGCGTTCATGATCTTTTGTACCGTCAATTTTTTTATCACACTTTTTGAACCCTCTCCATGAAGGGAATAATTAGTCCACGAGTCTTGAGCATTTTTAGAATTTTTTTTCATCCGTTCAGATGTCGGTAAGTTGGTTGATAGAACAGTAGAACATTTTCAATGGAAGCATGGGTGAAAGAGATTGTGTGTGTTTTCGATGTTATGAAACTTGGCAGTTTAAGAACTTAGAACGTTCTATTTTCTTCAGAATGTACTCATTTTAGTAATTCTAGTGCCAGTAGATCCTTGATGTTAGAATTATTTATTGTAATAATTGATGCAGGTACTCTCGATCTCCTTCCCCCTGGAGAGCTCCTTCAAGGTCAAGATCGAGGCCCAGGTCTAGATCCAGATCATGGTCAAGGCCAAGGTCTCAAAGTCGTGGAAGGTTGATTTTTATAGTTTTTTATTACTTGGATAAACTGAAAGTCAAAATGCTTTATGTTGGTGAACTTGGTACCTGAACCCTGTTCTTATGGTTTCACATGTTTCTGATTTAGATCAAGGTCGAGAAGTCGTGGGAGGTGCGTTTCTTCAGCTGGAACTCTGGATGAAAAACAAACAATACTCTGTTTCAGTACTTGAATTGGGTCTATTTCATGCCTTTGCTGCTTAGGTTGTTAGTGTTTCGATTCTCCTTGGATAACATTTTTAGCTTCTTCCAGGGAGAATGCCCTTAACCCTGGGAATACGCTTTATGTCACCGGTCTATCTGCGAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTTAGCTTCTGATCCCCAATTACTTGCAATTGATTGCATGATTATATGAGATTTACCTACTTCGTTCGTGATCTGAAAACCAACGATACAACATAAAGCAAGATCATATTTATTGTATTTCTTGAACATTGGAATGGTAATTGGATAGATAACAAATGACCTCAAGTTCTGTGAATCCATAATATCCCATCGTATCGAAAAACTAACAATTGGATTAGTTAACAAATGGCCCAAAGTTCTTCTATTACTTGTTTTCTTGGTCATGGTGTAGTCGGTTTATTCTTTCTTTTGTAATGCTTCTAATATTTGCAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCACGAACACGAATTTCCCGGGGTTTTGCATTTGTCCAGATGGACAATGTTGATGATGCTAATCGGTATGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGGTACTATGATTATTCTTCTCTGGTTAGCGTTCGAGTAATTTCGTTATTTTTTCCTAACTTGGAGATTTTCTGGTTTATTCTGAACAAGTTGTGTCAGCTACGTTGGCAGCCATCAGAGATGATGAGTTCTTCATCCATGTCAACTTTTTGTGAAACAGCTTGGTCAATGACAAGCTTAAACAACAGATTTCAATTGCAGCGCCCGATCAACTAA

mRNA sequence

AACAATACGAAATTTTTTTTCTCACGAATCCCAAAGGTCGCACAAGCCACGACGGCGATTTGCGACCGCTGCGGCTCGTGGAGAAGCCGTCCTCAGAAACCCTAAAATTCGTGTTTTGTATCTGTGTTTTTCGTTAGCTGTTTGCCTTTTGATTTCATTGCGGAAATGGCTGATTCTCATCGCAAAAGATGTCGGTACTCTCGATCTCCTTCCCCCTGGAGAGCTCCTTCAAGGTCAAGATCGAGGCCCAGGTCTAGATCCAGATCATGGTCAAGGCCAAGGTCTCAAAGTCGTGGAAGATCAAGGTCGAGAAGTCGTGGGAGGGAGAATGCCCTTAACCCTGGGAATACGCTTTATGTCACCGGTCTATCTGCGAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCACGAACACGAATTTCCCGGGGTTTTGCATTTGTCCAGATGGACAATGTTGATGATGCTAATCGGTATGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTTGTGTCAGCTACGTTGGCAGCCATCAGAGATGATGAGTTCTTCATCCATGTCAACTTTTTGTGAAACAGCTTGGTCAATGACAAGCTTAAACAACAGATTTCAATTGCAGCGCCCGATCAACTAA

Coding sequence (CDS)

ATGGCTGATTCTCATCGCAAAAGATGTCGGTACTCTCGATCTCCTTCCCCCTGGAGAGCTCCTTCAAGGTCAAGATCGAGGCCCAGGTCTAGATCCAGATCATGGTCAAGGCCAAGGTCTCAAAGTCGTGGAAGATCAAGGTCGAGAAGTCGTGGGAGGGAGAATGCCCTTAACCCTGGGAATACGCTTTATGTCACCGGTCTATCTGCGAGGGTCACTGAAAGAGACCTTGAAGAACACTTTTCCAAGGAGGGCAAGGTAGCTTCTTGTTTCCTTGTGGTTGAACCACGAACACGAATTTCCCGGGGTTTTGCATTTGTCCAGATGGACAATGTTGATGATGCTAATCGGTATGTTAAGCATCTCAACCAGTCAATTCTAGAAGGTCGATATATAACTGTGGAGAAGTTGTGTCAGCTACGTTGGCAGCCATCAGAGATGATGAGTTCTTCATCCATGTCAACTTTTTGTGAAACAGCTTGGTCAATGACAAGCTTAAACAACAGATTTCAATTGCAGCGCCCGATCAACTAA

Protein sequence

MADSHRKRCRYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVKHLNQSILEGRYITVEKLCQLRWQPSEMMSSSSMSTFCETAWSMTSLNNRFQLQRPIN

Homology

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BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-24
Identity = 71/133 (53.38%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 4   SHRKRCRYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPGNTL 63
           S+ +R RYS S SP+          + R RS SR  S+S  RS S      +A NPGN+L
Sbjct: 32  SYSRRSRYSPSLSPY---------DKRRGRSVSRSLSRSPTRSVS-----SDAENPGNSL 91

Query: 64  YVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVKHLN 123
           YVTGLS RVTERDLE+HF+KEGKV    LV++P TR SRGF F+ M +V DANR ++ L+
Sbjct: 92  YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 150

Query: 124 QSILEGRYITVEK 137
            S+L+GR ITVEK
Sbjct: 152 HSVLQGRVITVEK 150

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BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot
Match: Q3ZBT6 (Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 65/149 (43.62%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 10  RYSRSPSPWRAPSRSRSRPRSR---SRSWSRPRSQSRGRSRSRSR--------------- 69
           R SRS S  R+ SRSRSR  SR   +RS SR RS  R RSRS SR               
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 70  -----GRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 129
                G     +P   L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 130 VQMDNVDDANRYVKHLNQSILEGRYITVE 136
           V  +NVDDA    +  N   L+GR I V+
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot
Match: P62995 (Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 65/149 (43.62%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 10  RYSRSPSPWRAPSRSRSRPRSR---SRSWSRPRSQSRGRSRSRSR--------------- 69
           R SRS S  R+ SRSRSR  SR   +RS SR RS  R RSRS SR               
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 70  -----GRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 129
                G     +P   L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 130 VQMDNVDDANRYVKHLNQSILEGRYITVE 136
           V  +NVDDA    +  N   L+GR I V+
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot
Match: P62996 (Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 65/149 (43.62%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 10  RYSRSPSPWRAPSRSRSRPRSR---SRSWSRPRSQSRGRSRSRSR--------------- 69
           R SRS S  R+ SRSRSR  SR   +RS SR RS  R RSRS SR               
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 70  -----GRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 129
                G     +P   L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 130 VQMDNVDDANRYVKHLNQSILEGRYITVE 136
           V  +NVDDA    +  N   L+GR I V+
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVD 192

[Close]

BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot
Match: P62997 (Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 65/149 (43.62%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 10  RYSRSPSPWRAPSRSRSRPRSR---SRSWSRPRSQSRGRSRSRSR--------------- 69
           R SRS S  R+ SRSRSR  SR   +RS SR RS  R RSRS SR               
Sbjct: 44  RRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMST 103

Query: 70  -----GRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAF 129
                G     +P   L V GLS   TERDL E FSK G +A   +V + ++R SRGFAF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163

Query: 130 VQMDNVDDANRYVKHLNQSILEGRYITVE 136
           V  +NVDDA    +  N   L+GR I V+
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVD 192

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BLAST of CmoCh07G003960 vs. ExPASy TrEMBL
Match: A0A6J1EGF8 (serine/arginine-rich splicing factor SR45a-like OS=Cucurbita moschata OX=3662 GN=LOC111433944 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG 60
           MADSHRK  RYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG 60

Query: 61  NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK 120
           NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK
Sbjct: 61  NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK 120

Query: 121 HLNQSILEGRYITVEK 137
           HLNQSILEGRYITVEK
Sbjct: 121 HLNQSILEGRYITVEK 134

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BLAST of CmoCh07G003960 vs. ExPASy TrEMBL
Match: A0A6J1KT61 (serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=LOC111497374 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.5e-59
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MA SHRK  R+SRSPSPWRAP      SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE
Sbjct: 1   MAGSHRK--RHSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD
Sbjct: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. ExPASy TrEMBL
Match: A0A6J1BUT3 (serine/arginine-rich splicing factor SR45a isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005727 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 8.0e-57
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MADSHRK  RYSRSPSPWRAP      SRSRSRPRSRSRSWSRPRS+SRGRSRSRSRGR+
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRD 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           +ALN GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDNVDD
Sbjct: 61  HALNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. ExPASy TrEMBL
Match: A0A0A0KMM4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.2e-56
Identity = 126/142 (88.73%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MAD HRK  RYSRSPSPW+AP      SRSRSRPRSRSRSWSRPRS SRGRSRSRSRGRE
Sbjct: 1   MADVHRK--RYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGRE 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           +A NPGNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDNVDD
Sbjct: 61  HANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. ExPASy TrEMBL
Match: A0A6J1INV2 (serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111478126 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.8e-56
Identity = 127/141 (90.07%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP----SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGR-EN 60
           MADSHRK  RYSRSPSPWRAP    SRSRSRPRSRSRSWSRPRS+SRGRSRSRSRGR EN
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGEN 60

Query: 61  ALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDA 120
             NPGNTLYVTGLS RVTERDLEEHFSKEGKV+SCFLVVEPRTRISRGFAFV MDNVDDA
Sbjct: 61  VNNPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDA 120

Query: 121 NRYVKHLNQSILEGRYITVEK 137
           NR VKHLNQSILEGRYITVEK
Sbjct: 121 NRCVKHLNQSILEGRYITVEK 139

[Close]

BLAST of CmoCh07G003960 vs. NCBI nr
Match: XP_022926991.1 (serine/arginine-rich splicing factor SR45a-like [Cucurbita moschata])

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-63
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG 60
           MADSHRK  RYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRENALNPG 60

Query: 61  NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK 120
           NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK
Sbjct: 61  NTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDDANRYVK 120

Query: 121 HLNQSILEGRYITVEK 137
           HLNQSILEGRYITVEK
Sbjct: 121 HLNQSILEGRYITVEK 134

[Close]

BLAST of CmoCh07G003960 vs. NCBI nr
Match: XP_023003930.1 (serine/arginine-rich splicing factor SR45a-like [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MA SHRK  R+SRSPSPWRAP      SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE
Sbjct: 1   MAGSHRK--RHSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD
Sbjct: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. NCBI nr
Match: XP_022133034.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Momordica charantia])

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MADSHRK  RYSRSPSPWRAP      SRSRSRPRSRSRSWSRPRS+SRGRSRSRSRGR+
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRD 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           +ALN GNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDNVDD
Sbjct: 61  HALNTGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. NCBI nr
Match: XP_038881911.1 (serine/arginine-rich splicing factor SR45a [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-56
Identity = 127/142 (89.44%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MADSHRK  RYSRSPSPWRAP      SRSRSRPRSRSRSWSRPRS SRGRSRSRSRGR+
Sbjct: 1   MADSHRK--RYSRSPSPWRAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGRD 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           +A NPGNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDNVDD
Sbjct: 61  HAHNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. NCBI nr
Match: XP_031743118.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 126/142 (88.73%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSPWRAP------SRSRSRPRSRSRSWSRPRSQSRGRSRSRSRGRE 60
           MAD HRK  RYSRSPSPW+AP      SRSRSRPRSRSRSWSRPRS SRGRSRSRSRGRE
Sbjct: 1   MADVHRK--RYSRSPSPWKAPSRSRSRSRSRSRPRSRSRSWSRPRSPSRGRSRSRSRGRE 60

Query: 61  NALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQMDNVDD 120
           +A NPGNTLYVTGLS RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFV MDNVDD
Sbjct: 61  HANNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDD 120

Query: 121 ANRYVKHLNQSILEGRYITVEK 137
           ANR VKHLNQSILEGRYITVEK
Sbjct: 121 ANRCVKHLNQSILEGRYITVEK 140

[Close]

BLAST of CmoCh07G003960 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-42
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSP--------WRAPSRSRSRPRSRSRSWSRPR----SQSRGRSRS 60
           MADS ++R R SRSPSP         R+ SRSRSRPR RSRS S PR    S+SRGRSRS
Sbjct: 1   MADSPQRR-RDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRS 60

Query: 61  RSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQ 120
           RSRGR    NPG TLYVTGLS RVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFV 
Sbjct: 61  RSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 120

Query: 121 MDNVDDANRYVKHLNQSILEGRYITVEK 137
           M ++ DA R +K+LNQS+LEGRYITVE+
Sbjct: 121 MSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of CmoCh07G003960 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-42
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSP--------WRAPSRSRSRPRSRSRSWSRPR----SQSRGRSRS 60
           MADS ++R R SRSPSP         R+ SRSRSRPR RSRS S PR    S+SRGRSRS
Sbjct: 1   MADSPQRR-RDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRS 60

Query: 61  RSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQ 120
           RSRGR    NPG TLYVTGLS RVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFV 
Sbjct: 61  RSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 120

Query: 121 MDNVDDANRYVKHLNQSILEGRYITVEK 137
           M ++ DA R +K+LNQS+LEGRYITVE+
Sbjct: 121 MSSLKDAERCIKYLNQSVLEGRYITVER 147

[Close]

BLAST of CmoCh07G003960 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-40
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSP--------WRAPSRSRSRPRSRSRSWSRPR----SQSRGRSRS 60
           MADS ++R R SRSPSP         R+ SRSRSRPR RSRS S PR    S+SRGRSRS
Sbjct: 1   MADSPQRR-RDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRS 60

Query: 61  RSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVQ 120
           RSRG E   NPG TLYVTGLS RVT++DLE HF+KEGKVASCFLV+EPRTR+SRGFAFV 
Sbjct: 61  RSRGSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVT 120

Query: 121 MDNVDDANRYVKHLNQSILEGRYITVEK 137
           M ++ DA R +K+LNQS+LEGRYITVE+
Sbjct: 121 MSSLKDAERCIKYLNQSVLEGRYITVER 146

[Close]

BLAST of CmoCh07G003960 vs. TAIR 10
Match: AT4G35785.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-37
Identity = 101/163 (61.96%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSP--------WRAPSRSRSRPRSRSRSWSRPR----SQSRG---- 60
           MADS ++R R SRSPSP         R+ SRSRSRPR RSRS S PR    S+SRG    
Sbjct: 1   MADSPQRR-RDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILR 60

Query: 61  -----------RSRSRSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLV 120
                      RSRSRSRG E   NPG TLYVTGLS RVT++DLE HF+KEGKVASCFLV
Sbjct: 61  GNLFFITCTLCRSRSRSRGSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLV 120

Query: 121 VEPRTRISRGFAFVQMDNVDDANRYVKHLNQSILEGRYITVEK 137
           +EPRTR+SRGFAFV M ++ DA R +K+LNQS+LEGRYITVE+
Sbjct: 121 MEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

[Close]

BLAST of CmoCh07G003960 vs. TAIR 10
Match: AT4G35785.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-37
Identity = 101/163 (61.96%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 1   MADSHRKRCRYSRSPSP--------WRAPSRSRSRPRSRSRSWSRPR----SQSRG---- 60
           MADS ++R R SRSPSP         R+ SRSRSRPR RSRS S PR    S+SRG    
Sbjct: 1   MADSPQRR-RDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRILR 60

Query: 61  -----------RSRSRSRGRENALNPGNTLYVTGLSARVTERDLEEHFSKEGKVASCFLV 120
                      RSRSRSRG E   NPG TLYVTGLS RVT++DLE HF+KEGKVASCFLV
Sbjct: 61  GNLFFITCTLCRSRSRSRGSE-VENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLV 120

Query: 121 VEPRTRISRGFAFVQMDNVDDANRYVKHLNQSILEGRYITVEK 137
           +EPRTR+SRGFAFV M ++ DA R +K+LNQS+LEGRYITVE+
Sbjct: 121 MEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 161

The following BLAST results are available for this feature:

BLAST of CmoCh07G003960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	2.3e-24	53.38	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q3ZBT6	1.5e-12	43.62	Transformer-2 protein homolog beta OS=Bos taurus OX=9913 GN=TRA2B PE=2 SV=1	[more]
P62995	1.5e-12	43.62	Transformer-2 protein homolog beta OS=Homo sapiens OX=9606 GN=TRA2B PE=1 SV=1	[more]
P62996	1.5e-12	43.62	Transformer-2 protein homolog beta OS=Mus musculus OX=10090 GN=Tra2b PE=1 SV=1	[more]
P62997	1.5e-12	43.62	Transformer-2 protein homolog beta OS=Rattus norvegicus OX=10116 GN=Tra2b PE=1 S...	[more]

BLAST of CmoCh07G003960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGF8	2.6e-63	98.53	serine/arginine-rich splicing factor SR45a-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KT61	6.5e-59	92.25	serine/arginine-rich splicing factor SR45a-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1BUT3	8.0e-57	89.44	serine/arginine-rich splicing factor SR45a isoform X1 OS=Momordica charantia OX=...	[more]
A0A0A0KMM4	5.2e-56	88.73	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507340 PE=4 SV...	[more]
A0A6J1INV2	6.8e-56	90.07	serine/arginine-rich splicing factor SR45a OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CmoCh07G003960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926991.1	5.3e-63	98.53	serine/arginine-rich splicing factor SR45a-like [Cucurbita moschata]	[more]
XP_023003930.1	1.4e-58	92.25	serine/arginine-rich splicing factor SR45a-like [Cucurbita maxima]	[more]
XP_022133034.1	1.7e-56	89.44	serine/arginine-rich splicing factor SR45a isoform X1 [Momordica charantia]	[more]
XP_038881911.1	2.2e-56	89.44	serine/arginine-rich splicing factor SR45a [Benincasa hispida]	[more]
XP_031743118.1	1.1e-55	88.73	serine/arginine-rich splicing factor SR45a [Cucumis sativus]	[more]

BLAST of CmoCh07G003960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35785.2	9.4e-42	68.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	9.4e-42	68.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.3e-40	68.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.4	2.4e-37	61.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.5	2.4e-37	61.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 62..135 e-value: 3.4E-22 score: 89.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..132 e-value: 2.3E-16 score: 59.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 61..139 score: 16.022581
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..139 e-value: 3.9E-27 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 3..142
None	No IPR available	PANTHER	PTHR48034:SF15	OS06G0724600 PROTEIN	coord: 3..142
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G003960.1	CmoCh07G003960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding