CmoCh07G003460 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G003460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 1611682 .. 1612152 (+)
RNA-Seq ExpressionCmoCh07G003460
SyntenyCmoCh07G003460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA

mRNA sequence

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA

Coding sequence (CDS)

ATGGGTACGCACCAATCCAACCACCACCCATCTCTTGTCGTTCAATCCTCCATTGCTCTACTTCAAGAGAGATTCAGACAGCTTCAGAAAGTGAAGGAGATGAGAGAGGAGAGAGAGCTTGTACGATTGCTATCACTTTCCAACCCCAAAAAACATGGCTTGTTCAATACTTGTGTGCTGTTTGAACCCTCCGTTGCGACGATGATGATGCTACCTACCACGACGACGACAAAGATGTTAACTTTGCCTCAAACGTCTCTATCGCTTTGGCCGACGTCGCCATCACCAGGCAAGAAGCTCGCCGTTGGTGTTGATGTTGACGTGCCTGCATTGATGAACTTATGGCCGGTGGATAATGTAACTACTAGTACTACTTCGTCTTGTGATAGCGCCATCTCATTGATTAGTAAACTAGAACATGATCATGAGTCTGACTCTAATATCGATGTTGATACTTCTCTTCGCTTGTAA

Protein sequence

MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVLFEPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL
Homology
BLAST of CmoCh07G003460 vs. ExPASy TrEMBL
Match: A0A5D3CME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005880 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 93/187 (49.73%), Postives = 116/187 (62.03%), Query Frame = 0

Query: 5   QSNHHPSLVV-QSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKHGL-------- 64
           + N   S+VV  SSIALLQERFRQLQKVKEMREERE+V+LLSLS  PK H          
Sbjct: 8   KDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFNNT 67

Query: 65  ---FNTCVLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSP 124
               NTCV+FEPS++        MM +         ++TTT +  LPQTSLSL  T+ S 
Sbjct: 68  NTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTSSS 127

Query: 125 GKKLAVGVDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNID 157
                   + ++P LM+LWPV + T++T+SSCDSAIS ISKL +HDH        DS+I+
Sbjct: 128 HDHDHQQSN-NIPTLMDLWPVPSSTSTTSSSCDSAISFISKLNDHDHHDRDHHYFDSDIE 187

BLAST of CmoCh07G003460 vs. ExPASy TrEMBL
Match: A0A0A0KJS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.9e-24
Identity = 92/180 (51.11%), Postives = 111/180 (61.67%), Query Frame = 0

Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVG 131
           V+FEPS++        MM +         +TTTT +  LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDHDHQQ 136

Query: 132 VDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNIDVDTSLRL 157
            + ++P LM+LWPV   +TSTTSSCDSAIS I+KL +HDH        DS+I+VDTSL L
Sbjct: 137 SN-NIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDTSLHL 195

BLAST of CmoCh07G003460 vs. ExPASy TrEMBL
Match: A0A2P5EXK0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139070 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-10
Identity = 66/158 (41.77%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 5   QSNHHPSL--VVQSSIALLQERFRQLQKVKEMREERELVRLL-SLSNPKKHGLFNTCVLF 64
           +S+ +P+   +V SSIALLQERFR+LQ+VKEMREEREL+R+L    N   +  FNT   +
Sbjct: 4   ESHEYPTTTHMVHSSIALLQERFRELQRVKEMREERELLRMLVEPHNSTIYKRFNTTQYY 63

Query: 65  EPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKK--LAVGVDVDVPALMNLWP-VD 124
           EP+ A +         +  T PQ SLSLWPT  +  ++        V+ P LM  WP VD
Sbjct: 64  EPA-AKLAFHHDMMFQQRSTAPQVSLSLWPTFQNSFEEQYYYCSSFVESPLLMKSWPKVD 123

Query: 125 NVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
                 T S ++ ++       DHES    DVDTSL L
Sbjct: 124 ------TPSFEACLNKSQDSVDDHES----DVDTSLHL 150

BLAST of CmoCh07G003460 vs. ExPASy TrEMBL
Match: A0A6P3ZU56 (uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC107415217 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 0

Query: 9   HPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLS-NPKKHG--LFNTCVLFEPSV 68
           H  + + SSIALLQERFRQLQ++KEMRE +EL+R+L +  N +K      N  + FEP  
Sbjct: 6   HNPIAIHSSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDINLNPTLYFEPPK 65

Query: 69  ATMMMLPTTTTTKMLTL-PQTSLSLWPTSPS-PGKKLAVGVDVDV---PALMNLWPVDNV 128
           +     P   T ++  +  Q SLSLW    S    +   G+++     P LMNLWPV N 
Sbjct: 66  S--FPNPDFLTPQIRPISQQDSLSLWQNLRSNMNIEDFRGIEISCCVPPTLMNLWPV-ND 125

Query: 129 TTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           T S++++  S+ S I K E   +SDS+ DVDTSL L
Sbjct: 126 TPSSSNASSSSSSNIYKFE---DSDSDSDVDTSLHL 155

BLAST of CmoCh07G003460 vs. ExPASy TrEMBL
Match: A0A059CF52 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D01438 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 69/167 (41.32%), Postives = 87/167 (52.10%), Query Frame = 0

Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN----------PK 60
           MG  +SN    +V+QSSIALLQERFRQLQKVKEMREER+ ++LL+  N          P 
Sbjct: 1   MGIGESN--DPIVIQSSIALLQERFRQLQKVKEMREERQTLKLLTEPNSKVLSPTASPPP 60

Query: 61  KHGLFNTCVLFEPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPA 120
            H          P +    + P  ++      PQ SLSLWP+S S    L  G   + PA
Sbjct: 61  SHCEPLGFFFHHPEMMVNNIYPACSSP-----PQLSLSLWPSSRSNYSHLRFG---ETPA 120

Query: 121 LM-NLWPVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           L+ +LWPV+  TTS        +S     E+DH      DVDTSL L
Sbjct: 121 LVTSLWPVE--TTSL------RVSSTKYKEYDHFD----DVDTSLHL 145

BLAST of CmoCh07G003460 vs. NCBI nr
Match: KAG6594702.1 (hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 151/161 (93.79%), Postives = 154/161 (95.65%), Query Frame = 0

Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVL 60
           MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVL
Sbjct: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSNPKKHGLFNTCVL 60

Query: 61  FEPSVATMMMLPTTTT-----TKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPALMNLW 120
           FEPSVATMMMLPTTTT     TKMLTLPQTSLSLWPTSPSPGKKL VGVDVDVPALMNLW
Sbjct: 61  FEPSVATMMMLPTTTTTTMTATKMLTLPQTSLSLWPTSPSPGKKLTVGVDVDVPALMNLW 120

Query: 121 PVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           PVD+VTTST+SSCDSAISLISKLEHDHESDS+IDVDTSL L
Sbjct: 121 PVDSVTTSTSSSCDSAISLISKLEHDHESDSDIDVDTSLHL 161

BLAST of CmoCh07G003460 vs. NCBI nr
Match: TYK12991.1 (hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 93/187 (49.73%), Postives = 116/187 (62.03%), Query Frame = 0

Query: 5   QSNHHPSLVV-QSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKHGL-------- 64
           + N   S+VV  SSIALLQERFRQLQKVKEMREERE+V+LLSLS  PK H          
Sbjct: 8   KDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFNNT 67

Query: 65  ---FNTCVLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSP 124
               NTCV+FEPS++        MM +         ++TTT +  LPQTSLSL  T+ S 
Sbjct: 68  NTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTSSS 127

Query: 125 GKKLAVGVDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNID 157
                   + ++P LM+LWPV + T++T+SSCDSAIS ISKL +HDH        DS+I+
Sbjct: 128 HDHDHQQSN-NIPTLMDLWPVPSSTSTTSSSCDSAISFISKLNDHDHHDRDHHYFDSDIE 187

BLAST of CmoCh07G003460 vs. NCBI nr
Match: KGN49044.1 (hypothetical protein Csa_002770 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 92/180 (51.11%), Postives = 111/180 (61.67%), Query Frame = 0

Query: 12  LVVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKH------------GLFNTC 71
           L+  SSIALLQERFRQLQKVKEMREE+E+V+LLSLS  PK H               NTC
Sbjct: 17  LLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNNTNTNSTNTC 76

Query: 72  VLFEPSVAT-------MMML--------PTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVG 131
           V+FEPS++        MM +         +TTTT +  LPQTSLSL  TS S        
Sbjct: 77  VVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSSSSHDHDHQQ 136

Query: 132 VDVDVPALMNLWPVDNVTTSTTSSCDSAISLISKL-EHDHES------DSNIDVDTSLRL 157
            + ++P LM+LWPV   +TSTTSSCDSAIS I+KL +HDH        DS+I+VDTSL L
Sbjct: 137 SN-NIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSDIEVDTSLHL 195

BLAST of CmoCh07G003460 vs. NCBI nr
Match: PON90257.1 (hypothetical protein TorRG33x02_139070 [Trema orientale])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 66/158 (41.77%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 5   QSNHHPSL--VVQSSIALLQERFRQLQKVKEMREERELVRLL-SLSNPKKHGLFNTCVLF 64
           +S+ +P+   +V SSIALLQERFR+LQ+VKEMREEREL+R+L    N   +  FNT   +
Sbjct: 4   ESHEYPTTTHMVHSSIALLQERFRELQRVKEMREERELLRMLVEPHNSTIYKRFNTTQYY 63

Query: 65  EPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKK--LAVGVDVDVPALMNLWP-VD 124
           EP+ A +         +  T PQ SLSLWPT  +  ++        V+ P LM  WP VD
Sbjct: 64  EPA-AKLAFHHDMMFQQRSTAPQVSLSLWPTFQNSFEEQYYYCSSFVESPLLMKSWPKVD 123

Query: 125 NVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
                 T S ++ ++       DHES    DVDTSL L
Sbjct: 124 ------TPSFEACLNKSQDSVDDHES----DVDTSLHL 150

BLAST of CmoCh07G003460 vs. NCBI nr
Match: KAF3451851.1 (hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 66/161 (40.99%), Postives = 91/161 (56.52%), Query Frame = 0

Query: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELV-RLLSLSNPKKHGLFNTCV 60
           MGT +S+  PS VV SSIALLQERFRQLQ++KEMREE+EL+ R+L+++        N  V
Sbjct: 1   MGT-ESHECPS-VVHSSIALLQERFRQLQRMKEMREEKELINRMLAVAESNNKHYLNIHV 60

Query: 61  ----LFEPSVATMMMLPTTTTTKMLTLPQTSLSLWPTSPSPGKKLAVGVDVDVPALMNLW 120
                FEP+    +        ++    Q S+S W ++       +  +      LMNLW
Sbjct: 61  KPTMYFEPA---CLFPKPQRAIQVQPQNQDSVSQWQSNVEYRSVESSSISSCTRPLMNLW 120

Query: 121 PVDNVTTSTTSSCDSAISLISKLEHDHESDSNIDVDTSLRL 157
           P+D  T S  SS D+++S  SKL  ++  DS  DVDTSL L
Sbjct: 121 PIDYDTPS--SSSDASLS-FSKLSEEYLCDSESDVDTSLHL 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CME56.0e-2449.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KJS57.9e-2451.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1[more]
A0A2P5EXK04.9e-1041.77Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139070 PE=4 SV... [more]
A0A6P3ZU561.1e-0942.31uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC10741521... [more]
A0A059CF521.1e-0941.32Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D01438 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAG6594702.11.4e-7293.79hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK12991.11.2e-2349.73hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa][more]
KGN49044.11.6e-2351.11hypothetical protein Csa_002770 [Cucumis sativus][more]
PON90257.11.0e-0941.77hypothetical protein TorRG33x02_139070 [Trema orientale][more]
KAF3451851.11.7e-0940.99hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 6..156
NoneNo IPR availablePANTHERPTHR34570:SF7SUBFAMILY NOT NAMEDcoord: 6..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003460.1CmoCh07G003460.1mRNA