CmoCh07G003180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G003180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionchaperonin-like RBCX protein 1, chloroplastic
LocationCmo_Chr07: 1516336 .. 1516974 (+)
RNA-Seq ExpressionCmoCh07G003180
SyntenyCmoCh07G003180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGTGGGTTCTCTCTTTCTATTTCTTTCTGTCTTTCCATTTCATATACACAGATTTTGTTCGTTCCTTTGCTTATCTATAAATTCATAATCAGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCGATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

mRNA sequence

GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

Coding sequence (CDS)

ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

Protein sequence

MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLGKTQFYT
Homology
BLAST of CmoCh07G003180 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-29
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEA
Sbjct: 1   MESSSSLLHHSYLSYLNPKFGKRPLVSYPLM-QSSRKCKQTRICSNKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAK+LH+FFTYVAVRIV+AQLESYNPEA+ EL EFLD +S++DGDKF + LMR SSRH 
Sbjct: 61  KAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHM 120

Query: 121 SL 123
           +L
Sbjct: 121 NL 121

BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1EFL9 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433874 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK EASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51
Identity = 104/124 (83.87%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASK--SLRLHCHKMYVPGFGEASP 60
           MES AR+LSPT FPSLFP PNLNRS   P+WP K +ASK   L+L CHKMYVPGFGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  EAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSR 120
           EAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLDRHSLNDGDKFL++LMRESSR
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSR 120

Query: 121 HKSL 123
           HKSL
Sbjct: 121 HKSL 124

BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50
Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50
Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_022926897.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: KAG6594678.1 (Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_023003335.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-62
Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK EASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_023518339.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FP PNLNR NFNPVWP+K EASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SL 123
           SL
Sbjct: 121 SL 122

BLAST of CmoCh07G003180 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 7.5e-59
Identity = 121/147 (82.31%), Postives = 121/147 (82.31%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLE-------------------------SYNPEAHAELME 120
           KAAKNLHNFFTYVAVRIVTAQLE                         SYNPEAHAELME
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLVLILVLVEQSYNPEAHAELME 120

Query: 121 FLDRHSLNDGDKFLSNLMRESSRHKSL 123
           FLDRHSLNDGDKFLSNLMRESSRHKSL
Sbjct: 121 FLDRHSLNDGDKFLSNLMRESSRHKSL 147

BLAST of CmoCh07G003180 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 0

Query: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60
           MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEA
Sbjct: 1   MESSSSLLHHSYLSYLNPKFGKRPLVSYPLM-QSSRKCKQTRICSNKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAK+LH+FFTYVAVRIV+AQLESYNPEA+ EL EFLD +S++DGDKF + LMR SSRH 
Sbjct: 61  KAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHM 120

Query: 121 SL 123
           +L
Sbjct: 121 NL 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94AU92.9e-2956.56Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A6J1EFL93.8e-64100.00chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1KRH12.7e-6297.54chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1BTL56.2e-5183.87chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=... [more]
A0A5D3CNU46.9e-5083.61Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3B0546.9e-5083.61uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=... [more]
Match NameE-valueIdentityDescription
XP_022926897.17.8e-64100.00chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata][more]
KAG6594678.15.0e-6399.18Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma s... [more]
XP_023003335.15.6e-6297.54chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima][more]
XP_023518339.13.6e-6195.90chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG7026647.17.5e-5982.31Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. arg... [more]
Match NameE-valueIdentityDescription
AT4G04330.12.1e-3056.56Chaperonin-like RbcX protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003435Chaperonin-like RbcXPFAMPF02341RcbXcoord: 61..117
e-value: 3.8E-19
score: 69.0
IPR003435Chaperonin-like RbcXPANTHERPTHR33791FAMILY NOT NAMEDcoord: 8..123
IPR038052Chaperonin-like RbcX superfamilyGENE3D1.10.1200.210coord: 48..126
e-value: 1.1E-32
score: 114.8
IPR038052Chaperonin-like RbcX superfamilySUPERFAMILY158615RbcX-likecoord: 53..118
NoneNo IPR availablePANTHERPTHR33791:SF12CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTICcoord: 8..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003180.1CmoCh07G003180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0006270 DNA replication initiation
biological_process GO:0033314 mitotic DNA replication checkpoint signaling
biological_process GO:0015979 photosynthesis
biological_process GO:0009409 response to cold
biological_process GO:0009651 response to salt stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0110102 ribulose bisphosphate carboxylase complex assembly
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005664 nuclear origin of replication recognition complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0044183 protein folding chaperone