CmoCh07G003180 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGTGGGTTCTCTCTTTCTATTTCTTTCTGTCTTTCCATTTCATATACACAGATTTTGTTCGTTCCTTTGCTTATCTATAAATTCATAATCAGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCGATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLGKTQFYT Homology
BLAST of CmoCh07G003180 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 2.9e-29 Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 0
BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1EFL9 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433874 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62 Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0
BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51 Identity = 104/124 (83.87%), Postives = 110/124 (88.71%), Query Frame = 0
BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50 Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CmoCh07G003180 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50 Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_022926897.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of CmoCh07G003180 vs. NCBI nr
Match: KAG6594678.1 (Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_023003335.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 247.7 bits (631), Expect = 5.6e-62 Identity = 119/122 (97.54%), Postives = 119/122 (97.54%), Query Frame = 0
BLAST of CmoCh07G003180 vs. NCBI nr
Match: XP_023518339.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61 Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0
BLAST of CmoCh07G003180 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 237.3 bits (604), Expect = 7.5e-59 Identity = 121/147 (82.31%), Postives = 121/147 (82.31%), Query Frame = 0
BLAST of CmoCh07G003180 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein ) HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30 Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|