CmoCh07G002950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G002950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr07: 1438185 .. 1438508 (+)
RNA-Seq Expression	CmoCh07G002950
Synteny	CmoCh07G002950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

mRNA sequence

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

Coding sequence (CDS)

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

Protein sequence

MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP

Homology

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BLAST of CmoCh07G002950 vs. ExPASy TrEMBL
Match: A0A6J1KP23 (uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVK SNGYSKVDKEDP+EIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SICNVKISVYKQIICQIRNCKSLFGRK TNFANLPPLL
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLL 110

[Close]

BLAST of CmoCh07G002950 vs. ExPASy TrEMBL
Match: A0A0A0KJX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

[Close]

BLAST of CmoCh07G002950 vs. ExPASy TrEMBL
Match: A0A6J1CLW2 (uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012478 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSF+L++R NGYSKVDKEDP+EIIHRRAQF+IN+VLERA+SMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SI   KI VYKQ+I Q+RNCKSLFGRK    ANL P L
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFL 110

[Close]

BLAST of CmoCh07G002950 vs. ExPASy TrEMBL
Match: A0A5D3CMA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006550 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.0e-36
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL KR NGY KVDKEDP+EII RRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           +RLKKLKK    SI  +K+ VYKQ+I QIRN KSLFGRK T FAN P LL
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLL 110

[Close]

BLAST of CmoCh07G002950 vs. ExPASy TrEMBL
Match: A0A1S3B0N9 (uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.0e-36
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL KR NGY KVDKEDP+EII RRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           +RLKKLKK    SI  +K+ VYKQ+I QIRN KSLFGRK T FAN P LL
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLL 110

[Close]

BLAST of CmoCh07G002950 vs. NCBI nr
Match: KAG7026625.1 (hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 108
           RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP
Sbjct: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 107

[Close]

BLAST of CmoCh07G002950 vs. NCBI nr
Match: KAG6594658.1 (hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 108
           RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP
Sbjct: 61  RRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLLP 107

[Close]

BLAST of CmoCh07G002950 vs. NCBI nr
Match: XP_023003962.1 (uncharacterized protein LOC111497408 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVLVK SNGYSKVDKEDP+EIIHRRAQFIIN+VLERADSMGKASYLRIRIRRLRVRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SICNVKISVYKQIICQIRNCKSLFGRK TNFANLPPLL
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLL 110

[Close]

BLAST of CmoCh07G002950 vs. NCBI nr
Match: KGN49119.1 (hypothetical protein Csa_003853 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

[Close]

BLAST of CmoCh07G002950 vs. NCBI nr
Match: XP_038883675.1 (uncharacterized protein LOC120074584 [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL++R NGYSKVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLKKLKK    SI  +KI VYKQ+I QIRNCKSLFG K T+F N P LL
Sbjct: 61  RRLKKLKKSAMASISTLKIGVYKQVISQIRNCKSLFGPKQTHFPNFPLLL 110

[Close]

BLAST of CmoCh07G002950 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 12  YSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLR---------IRIRRLRVRFGRR 71
           Y+K++KEDP E+IHRRAQF+I +VLERADS  +    R         IR+  +R+R G++
Sbjct: 37  YTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIRVVGIRMRIGKK 96

Query: 72  LKKLKKS---ICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPL 106
           L+KL+K+   ICN  I+ + +   +   C S     +   ++LPPL
Sbjct: 97  LRKLRKTNTCICNNLITRFLKSFKRFL-CSSSSSSSSRTISDLPPL 141

[Close]

BLAST of CmoCh07G002950 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 38/112 (33.93%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 5   LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERAD------SMGKASYLRI---RIRRL 64
           ++K  N Y+K++KED +EIIHRRAQF+I+++L+RAD         + + +++   R+  +
Sbjct: 3   MMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGI 62

Query: 65  RVRFGRRLKKLKKSICNVKIS--VYKQIICQIRNCKSLFGRKATNFANLPPL 106
           R++ G++L+KL+KS   V  +  +  +++  +R  +  F     N +NLPPL
Sbjct: 63  RMKIGKKLRKLRKSCVMVDKNGDLIPRVLKSLR--RYFFCSSPRNDSNLPPL 112

[Close]

BLAST of CmoCh07G002950 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-10
Identity = 30/70 (42.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 5  LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGK----ASYLRIRIRRLRVRFG 64
          L KR   YSK+DKEDP+E++ RRA+F+I + L+ AD + +    +S++R+++  L+V+ G
Sbjct: 3  LFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIG 62

Query: 65 RRLKKLKKSI 71
          +RL KL++S+
Sbjct: 63 KRLAKLRRSV 72

The following BLAST results are available for this feature:

BLAST of CmoCh07G002950 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP23	1.0e-46	92.73	uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408...	[more]
A0A0A0KJX3	1.0e-38	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1	[more]
A0A6J1CLW2	2.8e-36	75.45	uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5D3CMA4	8.0e-36	76.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B0N9	8.0e-36	76.36	uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=...	[more]

BLAST of CmoCh07G002950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026625.1	4.8e-51	100.00	hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594658.1	1.1e-50	99.07	hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003962.1	2.1e-46	92.73	uncharacterized protein LOC111497408 [Cucurbita maxima]	[more]
KGN49119.1	2.1e-38	80.00	hypothetical protein Csa_003853 [Cucumis sativus]	[more]
XP_038883675.1	2.3e-37	78.18	uncharacterized protein LOC120074584 [Benincasa hispida]	[more]

BLAST of CmoCh07G002950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04745.1	4.7e-12	39.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	4.4e-10	33.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G11655.1	5.7e-10	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 4..103
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002950.1	CmoCh07G002950.1	mRNA