CmoCh07G001880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G001880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L34, chloroplastic-like
Location	Cmo_Chr07: 965921 .. 967269 (-)
RNA-Seq Expression	CmoCh07G001880
Synteny	CmoCh07G001880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATGGGCTTTAACGAGCCCATATGGATCTTGAATTGGGCCTGTTCGGATGCGGTCGTAATAAGGGATCGTGAGAAACCCCACGCGATCAGAACAACCATATCAGGATAAGGCTCTTTCTTCCTCCGAACCAACATTAGCTGAAAGGGGGAAACACAGTCAGTCCAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGTGAGGGATTCCTTCACTCCAATTTATGTATTGGTTCGAGTGATTTAATGATTTCGCATTATTGCTTGCTCATTTGCCAATGTAATGGAGTTTATAGGAAGTAGTTCGCTGAAGTATTTATTTGCTGTATTGTGCGTTTATTACTTTCTAGGGCCCTTGCATTTCGAATTGTATACGTTCAAGGTCGCTGGGTTTGATAACTTCATGCTTGCATTCGATTTGTTATGAATTCTCTTGTATTTTCCTTTTTATTCTTCCCGGTAACCGAATTGTAAGCGAATTATCCGTTGTGTTTTACTTGTTGAGGGGAAAGACTATGCCCCGCTTCCTGCAACATTGCGGCGCCTTCTAGCGATACTTAGTTCTGTTGATATAGATTTTGTAACATTAACTTTATGCGAAAGAAGTACTAATTTGCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATGATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTCGACTAGCTTATGTGATTCATACTTTCCCATTGTTCATTTGAAAATCTCCTCTGAACTGGAATATGTACTCTGAGGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTGGGTCTGAAA

mRNA sequence

TATAATGGGCTTTAACGAGCCCATATGGATCTTGAATTGGGCCTGTTCGGATGCGGTCGTAATAAGGGATCGTGAGAAACCCCACGCGATCAGAACAACCATATCAGGATAAGGCTCTTTCTTCCTCCGAACCAACATTAGCTGAAAGGGGGAAACACAGTCAGTCCAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATGATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTCGACTAGCTTATGTGATTCATACTTTCCCATTGTTCATTTGAAAATCTCCTCTGAACTGGAATATGTACTCTGAGGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTGGGTCTGAAA

Coding sequence (CDS)

ATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAA

Protein sequence

MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Homology

[Close]

BLAST of CmoCh07G001880 vs. ExPASy Swiss-Prot
Match: P82244 (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-36
Identity = 101/153 (66.01%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 1   MAAISVISS--LCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFL-PSSS 60
           MA +S++S+      T R PSASL F TGSR+++  + + N  SAR G LHCSFL PSSS
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRV-SFNGGSARSGSLHCSFLAPSSS 60

Query: 61  LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRR 120
           LS  S+FSGLSLGLD +   GV   + R  VVRAGKAALC TKR+RSRKSLARTHGFR R
Sbjct: 61  LS--SNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLR 120

Query: 121 MRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           M TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 MSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. ExPASy Swiss-Prot
Match: Q9LP37 (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-33
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL     +SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSL----TSSASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

[Close]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL
Match: A0A6J1EL73 (50S ribosomal protein L34, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433612 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC
Sbjct: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
           KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT
Sbjct: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL
Match: A0A6J1KNU0 (50S ribosomal protein L34, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496954 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           MAAISVISSLCVSTVRVPSASLVFSTGSR+SSISLNTANNASARPGLLHCSFLPSSSLSC
Sbjct: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRTSSISLNTANNASARPGLLHCSFLPSSSLSC 60

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
            SSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT
Sbjct: 61  SSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL
Match: A0A5D3CSJ7 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008120 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL
Match: A0A1S3AZG6 (50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL
Match: A0A0A0KI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.8e-57
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: XP_022926470.1 (50S ribosomal protein L34, chloroplastic-like [Cucurbita moschata] >XP_023517338.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG6594552.1 50S ribosomal protein L34, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026528.1 50S ribosomal protein L34, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC
Sbjct: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
           KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT
Sbjct: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: XP_023003306.1 (50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           MAAISVISSLCVSTVRVPSASLVFSTGSR+SSISLNTANNASARPGLLHCSFLPSSSLSC
Sbjct: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRTSSISLNTANNASARPGLLHCSFLPSSSLSC 60

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
            SSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT
Sbjct: 61  SSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: XP_008439748.1 (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: XP_004134668.1 (50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypothetical protein Csa_003653 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: XP_038883793.1 (50S ribosomal protein L34, chloroplastic [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 9.1e-56
Identity = 136/155 (87.74%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VST    VRVPSASLV STG R   S+SLNTANN SAR GLLHCSFL S
Sbjct: 1   MAAISVLSSPWVSTGATAVRVPSASLVISTGFRGCCSVSLNTANNTSARSGLLHCSFLSS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS KIGVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. TAIR 10
Match: AT1G29070.1 (Ribosomal protein L34 )

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-34
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL     +SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSL----TSSASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

The following BLAST results are available for this feature:

BLAST of CmoCh07G001880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82244	3.7e-36	66.01	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 P...	[more]
Q9LP37	6.6e-33	68.89	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]

BLAST of CmoCh07G001880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EL73	1.0e-68	100.00	50S ribosomal protein L34, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KNU0	8.5e-68	98.67	50S ribosomal protein L34, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3CSJ7	1.4e-57	88.39	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZG6	1.4e-57	88.39	50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452...	[more]
A0A0A0KI92	8.8e-57	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1	[more]

BLAST of CmoCh07G001880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926470.1	2.1e-68	100.00	50S ribosomal protein L34, chloroplastic-like [Cucurbita moschata] >XP_023517338...	[more]
XP_023003306.1	1.8e-67	98.67	50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima]	[more]
XP_008439748.1	2.8e-57	88.39	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 5...	[more]
XP_004134668.1	1.8e-56	87.10	50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypotheti...	[more]
XP_038883793.1	9.1e-56	87.74	50S ribosomal protein L34, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh07G001880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29070.1	4.7e-34	68.89	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 104..139 e-value: 1.9E-12 score: 46.9
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 105..138 e-value: 3.3E-11 score: 41.2
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 11..149
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 92..140 score: 12.617811
None	No IPR available	GENE3D	1.10.287.3980		coord: 92..150 e-value: 1.8E-26 score: 93.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150
None	No IPR available	PANTHER	PTHR14503:SF9	BNAC06G17900D PROTEIN	coord: 11..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G001880.1	CmoCh07G001880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome