CmoCh07G001610 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G001610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 860154 .. 861127 (-)
RNA-Seq ExpressionCmoCh07G001610
SyntenyCmoCh07G001610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATCTCTCGGATTATCTGCTCTGGAGTGAGCTTCAGTCTGGTGAATTTATGGTAATCAAGTATAAATGATTTCTTTGGTTGATTAGAAGCTATCTTTTCTTGCGTGCAGGTTTCATTTTCACTCCCATCTTCCTCAGGATGTGTGGCAGCTTATGACATAATGAATATTGAGCATATGTATATACTTTTCCTCCAGGAATCCATGAATATGATGATGCAGTTAAACGTGGGGAAATTAGTCTTTCTTCTTCCAGAGCATTTGCACAGAATACACAAGTAGTTCTAACTTGCTCTTCCTTTTCAGGATGCCAAGCAATTCTATACCCTCAAACAATCACAGTGCATGAGAACTGTTTTTGGTATATAAACTAAGCTTCTCTGCTGCTACATACACTCACTAACCGTTAAAGTTCTTCGTTGAAGGCTTGAAACATTATTGGCTCCAGGCTGCCGTCAAGTGGGGTGAAATTGAGTGTACAAGAACTGTTTTTCAAAATTTTATGTATAAGAATAGTAATACAACATTTGTCTACAAGTTATGCAACAAGTGTATTAGAAAGTGTTATCCAATGGGCTTGAAAAGTCTAAACGAATTTGAAATCTAAGAAAACCATTGGTTCTAAAAGAATCACTTAGGAACCATACAAGAGGAAGAGTGGACACCACATCTTTCAACCGCCAACATCCAACATTGACTGATACGAAATTGTCTATTAACAGTTCGATTGAAGTCTATCAGGTTTTTGTTTATAACATCATTATTGCTGTTTTTCAATAGCTCACGAAGTGAAGCAACCCGATCTTTTACGAAAATAGTTTAGTTGAAATAATCCTCTTCAACTGCAGGGACGATCATTCACTAAATCCACTTTCTGGATAGCTATTTCTTGCCATAATCTGCAAGATCACAGCACTTGGTTGAGTGAAGCTGAAAAGCAATGGTCAAATTGTCACATCGTCTATGTATGA

mRNA sequence

ATGTTCATCTCTCGGATTATCTGCTCTGGAGTGAGCTTCAGTCTGGTTTCATTTTCACTCCCATCTTCCTCAGGATGTGTGGCAGCTTATGACATAATGAATATTGAGCATATGTATATACTTTTCCTCCAGGAATCCATGAATATGATGATGCAGTTAAACGATGCCAAGCAATTCTATACCCTCAAACAATCACAGTGCATGAGAACTGTTTTTGGCTTGAAACATTATTGGCTCCAGGCTGCCGTCAAGTGGGGTGAAATTGAGTGTACAAGAACTGTTTTTCAAAATTTTATAAAACCATTGGTTCTAAAAGAATCACTTAGGAACCATACAAGAGGAAGAGTGGACACCACATCTTTCAACCGCCAACATCCAACATTGACTGATACGAAATTGTCTATTAACAGTTCGATTGAAGTCTATCAGGGACGATCATTCACTAAATCCACTTTCTGGATAGCTATTTCTTGCCATAATCTGCAAGATCACAGCACTTGGTTGAGTGAAGCTGAAAAGCAATGGTCAAATTGTCACATCGTCTATGTATGA

Coding sequence (CDS)

ATGTTCATCTCTCGGATTATCTGCTCTGGAGTGAGCTTCAGTCTGGTTTCATTTTCACTCCCATCTTCCTCAGGATGTGTGGCAGCTTATGACATAATGAATATTGAGCATATGTATATACTTTTCCTCCAGGAATCCATGAATATGATGATGCAGTTAAACGATGCCAAGCAATTCTATACCCTCAAACAATCACAGTGCATGAGAACTGTTTTTGGCTTGAAACATTATTGGCTCCAGGCTGCCGTCAAGTGGGGTGAAATTGAGTGTACAAGAACTGTTTTTCAAAATTTTATAAAACCATTGGTTCTAAAAGAATCACTTAGGAACCATACAAGAGGAAGAGTGGACACCACATCTTTCAACCGCCAACATCCAACATTGACTGATACGAAATTGTCTATTAACAGTTCGATTGAAGTCTATCAGGGACGATCATTCACTAAATCCACTTTCTGGATAGCTATTTCTTGCCATAATCTGCAAGATCACAGCACTTGGTTGAGTGAAGCTGAAAAGCAATGGTCAAATTGTCACATCGTCTATGTATGA

Protein sequence

MFISRIICSGVSFSLVSFSLPSSSGCVAAYDIMNIEHMYILFLQESMNMMMQLNDAKQFYTLKQSQCMRTVFGLKHYWLQAAVKWGEIECTRTVFQNFIKPLVLKESLRNHTRGRVDTTSFNRQHPTLTDTKLSINSSIEVYQGRSFTKSTFWIAISCHNLQDHSTWLSEAEKQWSNCHIVYV
Homology
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BLAST of CmoCh07G001610 vs. NCBI nr
Match: KAG7026510.1 (Protein STICHEL-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 16   VSFSLPSSSGCVAAYDIMNIEHMYILFLQESMNMMMQLN 55
            VSFSLPSSSGCVAAYDIMNIEHMYILFLQESMNMMMQLN
Sbjct: 1257 VSFSLPSSSGCVAAYDIMNIEHMYILFLQESMNMMMQLN 1295

The following BLAST results are available for this feature:
BLAST of CmoCh07G001610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G001610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G001610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026510.11.4e-10100.00Protein STICHEL-like 3 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh07G001610 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G001610.1CmoCh07G001610.1mRNA