CmoCh07G000920 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G000920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein HLP
LocationCmo_Chr07: 557679 .. 560361 (-)
RNA-Seq ExpressionCmoCh07G000920
SyntenyCmoCh07G000920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCCATCGTTCGTCTTCGTCTCTTTCCCCGCGGTGTTGTGGTGATCAAAGTTCGGATATGGCTGCTGCTTCTTTTGCTTCCAAGTGTTCCCGCGGTATGCGGCTTTCTGAAAGATCTTGGTGTGAATACTGGAATTTCTTTTGTTCTTTGAATTAGAGCTTCTACTTCTAGAGGCTCTGTAATCCGTTCTTTTAAGATCTTTTTGCTTGTGTTGAACCTTGATTTTACTTGATTAAGCTTCGGAAATGCTTGTTGTTTTGTTTCTTTTCTTAATTGATTTTTCTCATCATATATATTTGTCTCAATTTAATTTTGTATTTCTGGTTGTTGAGAAACTAATTTTGGCTCATTGTTTCATGTTCAATGTTTCTGAAAAATTAAACTAGTTGGTCGTTCATTATTGGGTGGACTTGGAAACATTTTGTCTGGTTCATTGAGCTCATCAAGTGAGACAGTATGCAGCAGTTTCATTTCGCAGGTCTTCTTCTCTGAATTTCAATCTTCTCATTTGACTTTCAACCCCTAAAAAGAGAATCAATGGAAAGAAAGTTACGTGTAATGTTAACTAGTTTATACTCATATGCATGAGCATAGGCGGTAAGAAAAGAATCTCATTGTTTATAAACTGAATTTTTGCTTGCTTATGCACATGTTCATGTTTACTCAAGAGGAAAATTAATAATGTGAAGAGAGATTGAAATTTTTGAATCATTGCAAGAGGCATAAAATGCTAAGGAAGCATTTTATGCATGAGCATAGGCGGTAAGAAAAGAATCTCATTGTTTATAAACTGAATTTTTGCTTGCTTATGCACATGTTCATGTTTACTCAAGAGGAAAATTAATAATGTGAAGAGAGATTGAAATTTTTGAATCATTGCAAGAGGCATAAAATGCTAAGGAAGCATTTTATGCATGAGCATAGGCGGTAAGAAAAGAATCTCATTGTTTATAAACTGAATTTTTGCTTGCTTATGCACATGTTCATGTTTACTCAAGAGGAAAATTAATAATGTGAAGAGAGATTGAAATTTTTGAATCATTGCAAGTGGCATAAAATGCTAAGGAAGCAACCTTGTGTATATGTTATCCTTGTGCAGCAACAAAGAACTTTCATACAGATGAGGACTGTGCTCAAAGTAGTGGATAACTCAGGGGCAAAGAAAGTGATGTGCATACAAGCATTGAAGGGGAAGAAAGGAGCACGACTGGGAGACACGATCGTCGCATCCGTGAAGGAAGCCCATCCAAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTTCGAGCTGCAATGCAAAAAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTATTTGTTGATAAGCAAGGCCAACCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAACACGTAAAGATTCTTACTTTGGCGGAGCACATTGCTTGAAATCCATAATCAAATCTGGAGCAAAGGCTAGAAGGTTAAGTTTGTTCATAACTTAAAAAATATAACCCGATTGGGATTTAGTGGAAGAACAAAGAGGAATCTGCTAAAACCGTCCGATAATAACAAGATTGTTCTTCGCGTTGCAATTCATCAAAGGAAAGTTGTTGATGGGTCGATCTTCCAAGTAGAAGCTACCGTTTATATGAGGTTAGATGTTAATAATCTACATTCTCTCCAATGCTTTAATTACTATGACTACCATCTCATTTCTTATGTATGGATTAGTTGATAGTTTACTTCGCAGTAGTTTTTGTTCCATTTAGGAAGTTTAAGAATTCTTAATGAGAAATTATCCCTTTAAACGAGGATTCTAAGTGGGGTATTAACCATTTAAATGAGGATTCATGGTGGAGAGTCCGACCTCGACGGATTTTTTAGAAAATAGCTATTATTTGTGTATGGAATTGAATGATTCCGCACAAAATTCTCTGTTTTTGGCCGCACCTTAATGAAAACCGCAAACTCCCCAAACCATCCATGGCCTCAAATCCTAATCGCCCGAGTCAAGGTCCTTCCATGGCTGCCTTCAACAAAACCATAGACCATTCACAACCCAAAATTCCAATCTCCTTCAGAATCTGAAGCGAAAACAAGGATTTGGGTCCAAATCCTCGAACTCCTTTAATGGCTACAATCCCATATCTTCCCTATCGACGCCTTTGATTTTGAATCCCACAACAATGGACAGCCCACCACCACCACCACCAACACCACCAACAACAACAGAGGCTAATAAGCTTCTGAACGTATCCTCTTTGAAGCTCTCCCGGCACTCCAGCACCAGAGATTCCGACGGCAGCGATGACCTCCGGTATACCAGCCTGAAGGACGTTCTCCTGAACTCACCGTCGTACAGCGGCGTAAATGACTTCAATGAGTTCAGTTCTCCGAACATTTCGATCCGAAATGAGCTGGTGAAAAGGGCGGCGTCGGCATACCTTCAATCGGCGGCGACTTTAGTCAGCCGGAATGAGAGCTGCATCGTGGGATTCTGGGGGAGGCTACGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGTAATTTTTTCCATAACATTTTTGGCTTCTTTACTTTTGCTCTAGACTGAAACACCACCACTTTTCGATCCATTTTCGATTCATTTTTTCTACATGTATGTTCTAATTGT

mRNA sequence

TCGCCATCGTTCGTCTTCGTCTCTTTCCCCGCGGTGTTGTGGTGATCAAAGTTCGGATATGGCTGCTGCTTCTTTTGCTTCCAAGTGTTCCCGCGTTGGTCGTTCATTATTGGGTGGACTTGGAAACATTTTGTCTGGTTCATTGAGCTCATCAAGTGAGACAGTATGCAGCAGTTTCATTTCGCAGCAACAAAGAACTTTCATACAGATGAGGACTGTGCTCAAAGTAGTGGATAACTCAGGGGCAAAGAAAGTGATGTGCATACAAGCATTGAAGGGGAAGAAAGGAGCACGACTGGGAGACACGATCGTCGCATCCGTGAAGGAAGCCCATCCAAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTTCGAGCTGCAATGCAAAAAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTATTTGTTGATAAGCAAGGCCAACCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAACACGTAAAGATTCTTACTTTGGCGGAGCACATTGCTTGAAATCCATAATCAAATCTGGAGCAAAGGCTAGAAGGTTAAGTTTGTTCATAACTTAAAAAATATAACCCGATTGGGATTTAGTGGAAGAACAAAGAGGAATCTGCTAAAACCGTCCGATAATAACAAGATTGTTCTTCGCGTTGCAATTCATCAAAGGAAAGTTGTTGATGGGTCGATCTTCCAAGTAGAAGCTACCGTTTATATGAGGTTAGATGTTAATAATCTACATTCTCTCCAATGCTTTAATTACTATGACTACCATCTCATTTCTTATGTATGGATTAGTTGATAGTTTACTTCGCAGTAGTTTTTGTTCCATTTAGGAAGTTTAAGAATTCTTAATGAGAAATTATCCCTTTAAACGAGGATTCTAAGTGGGGTATTAACCATTTAAATGAGGATTCATGGTGGAGAGTCCGACCTCGACGGATTTTTTAGAAAATAGCTATTATTTGTGTATGGAATTGAATGATTCCGCACAAAATTCTCTGTTTTTGGCCGCACCTTAATGAAAACCGCAAACTCCCCAAACCATCCATGGCCTCAAATCCTAATCGCCCGAGTCAAGGTCCTTCCATGGCTGCCTTCAACAAAACCATAGACCATTCACAACCCAAAATTCCAATCTCCTTCAGAATCTGAAGCGAAAACAAGGATTTGGGTCCAAATCCTCGAACTCCTTTAATGGCTACAATCCCATATCTTCCCTATCGACGCCTTTGATTTTGAATCCCACAACAATGGACAGCCCACCACCACCACCACCAACACCACCAACAACAACAGAGGCTAATAAGCTTCTGAACGTATCCTCTTTGAAGCTCTCCCGGCACTCCAGCACCAGAGATTCCGACGGCAGCGATGACCTCCGGTATACCAGCCTGAAGGACGTTCTCCTGAACTCACCGTCGTACAGCGGCGTAAATGACTTCAATGAGTTCAGTTCTCCGAACATTTCGATCCGAAATGAGCTGGTGAAAAGGGCGGCGTCGGCATACCTTCAATCGGCGGCGACTTTAGTCAGCCGGAATGAGAGCTGCATCGTGGGATTCTGGGGGAGGCTACGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGTAATTTTTTCCATAACATTTTTGGCTTCTTTACTTTTGCTCTAGACTGAAACACCACCACTTTTCGATCCATTTTCGATTCATTTTTTCTACATGTATGTTCTAATTGT

Coding sequence (CDS)

ATGGCTGCTGCTTCTTTTGCTTCCAAGTGTTCCCGCGTTGGTCGTTCATTATTGGGTGGACTTGGAAACATTTTGTCTGGTTCATTGAGCTCATCAAGTGAGACAGTATGCAGCAGTTTCATTTCGCAGCAACAAAGAACTTTCATACAGATGAGGACTGTGCTCAAAGTAGTGGATAACTCAGGGGCAAAGAAAGTGATGTGCATACAAGCATTGAAGGGGAAGAAAGGAGCACGACTGGGAGACACGATCGTCGCATCCGTGAAGGAAGCCCATCCAAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGAGTGGTTGTTCGAGCTGCAATGCAAAAAGGTCGTTGTGATGGGAGCGAGGTCAAGTTTGATGATAATGCTGTAGTATTTGTTGATAAGCAAGGCCAACCTATTGGGACAAGAGTGTTTGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAACACGTAAAGATTCTTACTTTGGCGGAGCACATTGCTTGA

Protein sequence

MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Homology
[Close]
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match: Q93Z17 (50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.9e-61
Identity = 132/174 (75.86%), Postives = 146/174 (83.91%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQ--RTFIQMRTVLKVVDN 62
           AA+FAS+ +R GRSLLGGL N   GS++SS+  +  S +SQQQ  RTFIQM TVLKVVDN
Sbjct: 2   AAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVDN 61

Query: 63  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 122
           SGAKKVMCIQALKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQ+GR DGS
Sbjct: 62  SGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGS 121

Query: 123 EVKFDDNAVVFVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           EV+FDDNAVV VD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 122 EVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match: Q84JG5 (50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-47
Identity = 118/195 (60.51%), Postives = 139/195 (71.28%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCS-SFISQQQ-RTFIQMRTVLKVVDN 62
           A + ASK S+ GRSLLGGL N  SG ++SSS  + + S +SQQQ RTFIQM T+LK VDN
Sbjct: 2   ATALASKLSK-GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVDN 61

Query: 63  SGAKKVMCIQALKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVVV 122
           S AK+VMCIQ+L+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVVV
Sbjct: 62  SCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVV 121

Query: 123 RAAMQKGRCDGSEVKFDDNAVVFV---DKQG--------------QPIGTRVFGPVPHEL 167
           RAAM KGR DGS+VKFDDNA+V V   +K+G              QP GTRVFGPVPHE+
Sbjct: 122 RAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHEM 181

[Close]
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match: A8GVC4 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplN PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.1e-32
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0 

Query: 49  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 108
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 109 VVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 167
           +VR      R DGS +KFD NA+V ++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match: Q1RHN1 (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplN PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.1e-32
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0 

Query: 49  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 108
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 109 VVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 167
           +VR      R DGS +KFD NA+V ++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match: Q9ZCR5 (50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplN PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0 

Query: 49  IQMRTVLKVVDNSGAKKVMCIQALKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 108
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 109 VVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 167
           +VR      R DGS +KFD NA+V ++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRSDGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match: A0A6J1EJP6 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111433926 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.2e-84
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60
           MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN
Sbjct: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60

Query: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120
           SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS
Sbjct: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120

Query: 121 EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167

[Close]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match: A0A6J1EE21 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111433311 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 158/165 (95.76%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+FASKCSRVGRSLLGGLG  LSGSL++S+ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAAFASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match: A0A6J1IUK7 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111478713 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 157/165 (95.15%), Postives = 161/165 (97.58%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+ ASKCSRVGRSLLGGLG  LSGSL++S+ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAALASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match: A0A6J1D048 (50S ribosomal protein HLP, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015838 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+FASKCSRVGRSLLGGLGN L G LS++ ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAAFASKCSRVGRSLLGGLGNNLPGLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match: A0A0A0LME7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.6e-77
Identity = 154/165 (93.33%), Postives = 161/165 (97.58%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           A++FASK SRVGRSLLGGLGN LSGSL++S+ETVC+SFI+QQQRTFIQMRTVLKVVDNSG
Sbjct: 2   ASAFASKFSRVGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQK RCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. NCBI nr
Match: XP_022926968.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60
           MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN
Sbjct: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60

Query: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120
           SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS
Sbjct: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120

Query: 121 EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167

[Close]
BLAST of CmoCh07G000920 vs. NCBI nr
Match: KAG6594454.1 (50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.4 bits (812), Expect = 7.4e-83
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0 

Query: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60
           MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN
Sbjct: 1   MAAASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDN 60

Query: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120
           SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS
Sbjct: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 120

Query: 121 EVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           EVKFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 EVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167

[Close]
BLAST of CmoCh07G000920 vs. NCBI nr
Match: XP_022926089.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 158/165 (95.76%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+FASKCSRVGRSLLGGLG  LSGSL++S+ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAAFASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. NCBI nr
Match: XP_022978898.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita maxima] >KAG6581441.1 50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 157/165 (95.15%), Postives = 161/165 (97.58%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+ ASKCSRVGRSLLGGLG  LSGSL++S+ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAALASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. NCBI nr
Match: XP_022146696.1 (50S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQRTFIQMRTVLKVVDNSG 62
           AA+FASKCSRVGRSLLGGLGN L G LS++ ETVCSSFISQQQRTFIQMRTVLKVVDNSG
Sbjct: 2   AAAFASKCSRVGRSLLGGLGNNLPGLLSTAQETVCSSFISQQQRTFIQMRTVLKVVDNSG 61

Query: 63  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 122
           AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV
Sbjct: 62  AKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEV 121

Query: 123 KFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           KFDDNAVV VDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 122 KFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]
BLAST of CmoCh07G000920 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-62
Identity = 132/173 (76.30%), Postives = 146/173 (84.39%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQ-RTFIQMRTVLKVVDNS 62
           AA+FAS+ +R GRSLLGGL N   GS++SS+  +  S +SQQQ RTFIQM TVLKVVDNS
Sbjct: 2   AAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQRRTFIQMGTVLKVVDNS 61

Query: 63  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 122
           GAKKVMCIQALKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQ+GR DGSE
Sbjct: 62  GAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSE 121

Query: 123 VKFDDNAVVFVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           V+FDDNAVV VD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 122 VRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 172

[Close]
BLAST of CmoCh07G000920 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-62
Identity = 132/174 (75.86%), Postives = 146/174 (83.91%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCSSFISQQQ--RTFIQMRTVLKVVDN 62
           AA+FAS+ +R GRSLLGGL N   GS++SS+  +  S +SQQQ  RTFIQM TVLKVVDN
Sbjct: 2   AAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVDN 61

Query: 63  SGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGS 122
           SGAKKVMCIQALKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQ+GR DGS
Sbjct: 62  SGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGS 121

Query: 123 EVKFDDNAVVFVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 168
           EV+FDDNAVV VD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 122 EVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]
BLAST of CmoCh07G000920 vs. TAIR 10
Match: AT1G17560.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-48
Identity = 118/195 (60.51%), Postives = 139/195 (71.28%), Query Frame = 0 

Query: 3   AASFASKCSRVGRSLLGGLGNILSGSLSSSSETVCS-SFISQQQ-RTFIQMRTVLKVVDN 62
           A + ASK S+ GRSLLGGL N  SG ++SSS  + + S +SQQQ RTFIQM T+LK VDN
Sbjct: 2   ATALASKLSK-GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVDN 61

Query: 63  SGAKKVMCIQALKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVVV 122
           S AK+VMCIQ+L+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVVV
Sbjct: 62  SCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVV 121

Query: 123 RAAMQKGRCDGSEVKFDDNAVVFV---DKQG--------------QPIGTRVFGPVPHEL 167
           RAAM KGR DGS+VKFDDNA+V V   +K+G              QP GTRVFGPVPHE+
Sbjct: 122 RAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHEM 181

[Close]
BLAST of CmoCh07G000920 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-23
Identity = 52/120 (43.33%), Postives = 82/120 (68.33%), Query Frame = 0 

Query: 49  IQMRTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 108
           IQ +T L V DNSGA+++MCI+ +    ++ A +GD IVA +KEA PN  +++ +V+  V
Sbjct: 2   IQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 109 VVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 167
           +VR   +  R +G+ +++DDNA V +D++G P GTRVFG +P ELR+    KI++LA  +
Sbjct: 62  IVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEV 121

[Close]
BLAST of CmoCh07G000920 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 52.0 bits (123), Expect = 5.4e-07
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 49  IQMRTVLKVVDNSGAKKVMCIQALKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 108
           + +   +   DN+GAK +  I ++KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 109 VVYGVVVRAAMQKGRCDGSEVKFDDNAVVFVDKQGQPIGTRVFGPVPHE 151
           V+  V+VR      R DG  + F+DNA V V+ +G+  G+ + GP+  E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

The following BLAST results are available for this feature:
BLAST of CmoCh07G000920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93Z172.9e-6175.8650S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP ... [more]
Q84JG51.8e-4760.5150S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL ... [more]
A8GVC48.1e-3260.0050S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=... [more]
Q1RHN18.1e-3260.0050S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp... [more]
Q9ZCR51.1e-3160.0050S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G... [more]
BLAST of CmoCh07G000920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EJP67.2e-84100.0050S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1EE212.4e-7995.7650S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IUK71.2e-7895.1550S ribosomal protein HLP, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1D0481.2e-7895.1550S ribosomal protein HLP, mitochondrial isoform X2 OS=Momordica charantia OX=36... [more]
A0A0A0LME76.6e-7793.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1[more]
BLAST of CmoCh07G000920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926968.11.5e-83100.0050S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata][more]
KAG6594454.17.4e-8399.4050S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp.... [more]
XP_022926089.15.0e-7995.7650S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata][more]
XP_022978898.12.5e-7895.1550S ribosomal protein HLP, mitochondrial-like [Cucurbita maxima] >KAG6581441.1 5... [more]
XP_022146696.12.5e-7895.1550S ribosomal protein HLP, mitochondrial isoform X2 [Momordica charantia][more]
BLAST of CmoCh07G000920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46160.21.6e-6276.30Ribosomal protein L14p/L23e family protein [more]
AT5G46160.12.0e-6275.86Ribosomal protein L14p/L23e family protein [more]
AT1G17560.11.3e-4860.51Ribosomal protein L14p/L23e family protein [more]
ATCG00780.12.4e-2343.33ribosomal protein L14 [more]
AT1G04480.15.4e-0733.03Ribosomal protein L14p/L23e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 48..167
e-value: 3.4E-61
score: 219.3
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 49..166
e-value: 2.3E-49
score: 166.4
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 22..167
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 48..167
score: 23.197695
IPR036853Ribosomal protein L14 superfamilyGENE3D2.40.150.20Ribosomal protein L14coord: 48..167
e-value: 4.4E-47
score: 161.0
IPR036853Ribosomal protein L14 superfamilySUPERFAMILY50193Ribosomal protein L14coord: 49..166
IPR005745Ribosomal protein L14P, bacterial-typeTIGRFAMTIGR01067TIGR01067coord: 49..166
e-value: 5.6E-43
score: 143.7
NoneNo IPR availablePANTHERPTHR11761:SF3850S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1coord: 22..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G000920.1CmoCh07G000920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome