CmoCh07G000110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh07G000110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr07: 76059 .. 77590 (+)
RNA-Seq Expression	CmoCh07G000110
Synteny	CmoCh07G000110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCCCCTCCCTCTCAAAACCCTAAATTCTCTAGAGGCAATCAATCAAAGCCACCCGGGACTCGGAGCGTGAAGAAGCTCATCGGAGAGAAGAAATATGGCGAAATCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCCATCAGGAGAGAGATGGTTGAGCCTATTTACGACAAGAAAGACGCTGCGAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCCCCTAAGCTTCCCGTGCGCCCCTCTCCTTTCACCAATATCTCTACTATGGACGTCGCACCAGCCTCTACTTCAACCGCCGCCGACGCTGCTATGGGTACCCCCTTTCTTCTTTTTATTACTTGTACATGTTTCGTTTTGCTTTTCTTTTTTAATTATTTGGGTTGTGGCTTTAACTTTAGTGGTTTTTCATCTCATTGTATGGAAATTCTTTCATTCTTTCATTCTCTTCGACTCAATCCACGGCGAATCTCGATATCAAAACTATTTCTATTGGCTAGGTGCTCAATTTGTAGTCCGTTCGTCCCTTCTTATGACAATATCCACTTCTTTTTAATTCTTCATGAATTAGTCTGCATTCCTAGCACTCAGATGTTGTAGGATCAAAACGAGAGAGCAGTCAGTGGTGTAGTGTAGGAGGAATGTGGCTCGTTTTTTGAAACTCAACTCTTATTTTAAGCTTTAGGCAGATGAATGCAACTTCTTTTATCATCTTGTATGTATAAGTCATATTAGACGTACAGTATGAAGTATTAAAAATGTTCTCTTTTAATAAGCTAGTAATGTTTGTTTTGGTCCTTTCTCTCTGTGATTATGACCCTAAACCTTTGTCATGAAAACTAAAGGAAGCGTAATGCTAAGTGTTGTTATATTGTGCTTTCCTATGAGCTAGAGACTAGGTTTTGTTTTTAAAATTTTAGAAGAGTTATGTTTTAAGCTGCTGGATGGGGATGGGGTGTTTTGAGAAGAAATCTGGAAAGGGTCTTTCCAACTCCAATGGTGGCAGCTGCAGAAAACAGAAAGAACAATAATAAATCTTCATTACTTGTTGAAACTATTAATTTGAGCTGAGTTGTCTGTAAAAGTAAAGAATATGAATGAGGTTTTGTTGGCTGGCACTCTACTAGGCCTTGAGAATAGAGTTGTTGGATTGGAGGCCCTCATTTATTTGTTTGTTTGTTTGTAATTGCGTGTTACAGAGGTGGAGATGGATGATGGCAGTGAAAGCATGATGGCGCTGAAGGCTGTTGGTGGGATTGGCAAGAAATCCAAAAAGAAATTCAAGGTTGGGAAGGCCAAGCGGCGTGGTAAGTGCAAGATCAAGAGGAATCGCCACATCTAGTCCCGTGGCCACTGTACTTGGATACATGGCCTCTCCCAATACTTAACTATATTGTATTAAGTACTAAGTTCAGTGACATTTGGTTAACCCTTCAAGTTTAATTATTTATTTCTTACTCTCACTCTTCTGTTTACTTGGTCAGCCAATTCTAGCACTTTTTTGTCCAAACCCTGTTCCAAGACTTTACAG

mRNA sequence

TCTGCCCCTCCCTCTCAAAACCCTAAATTCTCTAGAGGCAATCAATCAAAGCCACCCGGGACTCGGAGCGTGAAGAAGCTCATCGGAGAGAAGAAATATGGCGAAATCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCCATCAGGAGAGAGATGGTTGAGCCTATTTACGACAAGAAAGACGCTGCGAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCCCCTAAGCTTCCCGTGCGCCCCTCTCCTTTCACCAATATCTCTACTATGGACGTCGCACCAGCCTCTACTTCAACCGCCGCCGACGCTGCTATGGAGGTGGAGATGGATGATGGCAGTGAAAGCATGATGGCGCTGAAGGCTGTTGGTGGGATTGGCAAGAAATCCAAAAAGAAATTCAAGGTTGGGAAGGCCAAGCGGCGTGGTAAGTGCAAGATCAAGAGGAATCGCCACATCTAGTCCCGTGGCCACTGTACTTGGATACATGGCCTCTCCCAATACTTAACTATATTGTATTAAGTACTAAGTTCAGTGACATTTGGTTAACCCTTCAAGTTTAATTATTTATTTCTTACTCTCACTCTTCTGTTTACTTGGTCAGCCAATTCTAGCACTTTTTTGTCCAAACCCTGTTCCAAGACTTTACAG

Coding sequence (CDS)

ATGGCGAAATCCATGAGATCCAAGAGAGAGAAGAGGCTGAGAGCCATCAGGAGAGAGATGGTTGAGCCTATTTACGACAAGAAAGACGCTGCGAAGCTCGCTGCTCAACAGGCTGCTCTTGCTGCCCCTAAGCTTCCCGTGCGCCCCTCTCCTTTCACCAATATCTCTACTATGGACGTCGCACCAGCCTCTACTTCAACCGCCGCCGACGCTGCTATGGAGGTGGAGATGGATGATGGCAGTGAAAGCATGATGGCGCTGAAGGCTGTTGGTGGGATTGGCAAGAAATCCAAAAAGAAATTCAAGGTTGGGAAGGCCAAGCGGCGTGGTAAGTGCAAGATCAAGAGGAATCGCCACATCTAG

Protein sequence

MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDVAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI

Homology

[Close]

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL
Match: A0A6J1KND1 (uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.9e-52
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60
           MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60

Query: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120
           APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI
Sbjct: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120

[Close]

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL
Match: A0A6J1EMJ6 (uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC111433923 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.9e-52
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60
           MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60

Query: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120
           APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI
Sbjct: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120

[Close]

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL
Match: A0A6J1IMI5 (uncharacterized protein LOC111478758 OS=Cucurbita maxima OX=3661 GN=LOC111478758 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRR+MV+P YDKKDAAKLAAQ+AALAAPKLPVRPSPFT NISTMD
Sbjct: 1   MAKSMRSKREKRLRAIRRDMVDPFYDKKDAAKLAAQEAALAAPKLPVRPSPFTSNISTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA AS ST AD+AM+VEM++  ES   LKAVGGIGKKSK+KFKVGKAKRRGKCKIKRNRH
Sbjct: 61  VASASASTNADSAMDVEMNEYGES-TTLKAVGGIGKKSKRKFKVGKAKRRGKCKIKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL
Match: A0A6J1EC45 (uncharacterized protein LOC111432982 OS=Cucurbita moschata OX=3662 GN=LOC111432982 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-39
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRR+MV+P YDKKDAAKLAAQQAALAAPKLPVRPSP T NISTMD
Sbjct: 1   MAKSMRSKREKRLRAIRRDMVDPFYDKKDAAKLAAQQAALAAPKLPVRPSPSTSNISTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA AS ST AD+AM+VEM+   ES   LKAVGGIGKKSK+KFKVGKAKRRGKCKIKRNRH
Sbjct: 61  VASASASTDADSAMDVEMNGYGES-TTLKAVGGIGKKSKRKFKVGKAKRRGKCKIKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL
Match: A0A5A7UG11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00140 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.7e-39
Identity = 100/121 (82.64%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRREMV+P YDKK+AAKLAAQ+AALAAPKLPVR SPFT N+STMD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKEAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA ASTS+A DAAM+V+MDD S S   LK VGG+GKKSK+KFKVGKAKRRGKCK+KRNRH
Sbjct: 61  VALASTSSAPDAAMDVDMDDCSRS-NTLKPVGGVGKKSKRKFKVGKAKRRGKCKVKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. NCBI nr
Match: XP_022926965.1 (uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 uncharacterized protein LOC111497220 [Cucurbita maxima] >XP_023517951.1 uncharacterized protein LOC111781531 [Cucurbita pepo subsp. pepo] >KAG7026380.1 hypothetical protein SDJN02_10379 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60
           MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60

Query: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120
           APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI
Sbjct: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRHI 120

[Close]

BLAST of CmoCh07G000110 vs. NCBI nr
Match: KAG6594375.1 (hypothetical protein SDJN03_10928, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60
           MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV
Sbjct: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFTNISTMDV 60

Query: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRR 110
           APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRR
Sbjct: 61  APASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRR 109

[Close]

BLAST of CmoCh07G000110 vs. NCBI nr
Match: XP_038877484.1 (uncharacterized protein LOC120069761 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 9.5e-40
Identity = 104/121 (85.95%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRREMV+P YDKKDAAKLAAQ+AALAAPKLPVR SPFT N+STMD
Sbjct: 1   MAKSMRSKREKRLRAIRREMVDPFYDKKDAAKLAAQEAALAAPKLPVRSSPFTSNVSTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA ASTST AD AM+VEMDD S S   LK VGGIGKKSK+KFKVGKAKRRGKCKIKRNRH
Sbjct: 61  VAQASTSTDADTAMDVEMDDCSRS-NTLKPVGGIGKKSKRKFKVGKAKRRGKCKIKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. NCBI nr
Match: XP_022978967.1 (uncharacterized protein LOC111478758 [Cucurbita maxima])

HSP 1 Score: 173.7 bits (439), Expect = 9.5e-40
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRR+MV+P YDKKDAAKLAAQ+AALAAPKLPVRPSPFT NISTMD
Sbjct: 1   MAKSMRSKREKRLRAIRRDMVDPFYDKKDAAKLAAQEAALAAPKLPVRPSPFTSNISTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA AS ST AD+AM+VEM++  ES   LKAVGGIGKKSK+KFKVGKAKRRGKCKIKRNRH
Sbjct: 61  VASASASTNADSAMDVEMNEYGES-TTLKAVGGIGKKSKRKFKVGKAKRRGKCKIKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. NCBI nr
Match: XP_023544802.1 (uncharacterized protein LOC111804285 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 9.5e-40
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMVEPIYDKKDAAKLAAQQAALAAPKLPVRPSPFT-NISTMD 60
           MAKSMRSKREKRLRAIRR+MV+P YDKKDAAKLAAQQAALAAPKLPVRPSPFT NISTMD
Sbjct: 1   MAKSMRSKREKRLRAIRRDMVDPFYDKKDAAKLAAQQAALAAPKLPVRPSPFTSNISTMD 60

Query: 61  VAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIKRNRH 120
           VA AS ST AD+AM+VEM+   ES   LKAVGGIGKKSK+KFKVGKAKRRGKCKIKRNRH
Sbjct: 61  VASASASTDADSAMDVEMNGYGES-TTLKAVGGIGKKSKRKFKVGKAKRRGKCKIKRNRH 120

[Close]

BLAST of CmoCh07G000110 vs. TAIR 10
Match: AT1G30880.1 (unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-13
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 1   MAKSMRSKREKRLRAIRREMV--EPIYDKKDAAKLAAQQAALAAPKLPVRP---SPFTNI 60
           MAKSMR KR KRLRAIRRE+V  E     ++ AK AA +AALAAPKLPVR    SPF  +
Sbjct: 1   MAKSMRCKRVKRLRAIRREIVEKESFTLTREDAKSAAIEAALAAPKLPVRQAPVSPFMEV 60

Query: 61  STMDVAPASTSTAADAAMEVEMDDGSESMMALKAVGGIGKKSKKKFKVGKAKRRGKCKIK 120
           +T     AS ST      + EMDD  ++    K++  IGKK KKKFK+G   RR K  ++
Sbjct: 61  ATPSSESASASTTIANDSDEEMDDEKKN----KSLKPIGKKLKKKFKLGMKNRRSKGVLR 120

The following BLAST results are available for this feature:

BLAST of CmoCh07G000110 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh07G000110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KND1	6.9e-52	100.00	uncharacterized protein LOC111497220 OS=Cucurbita maxima OX=3661 GN=LOC111497220...	[more]
A0A6J1EMJ6	6.9e-52	100.00	uncharacterized protein LOC111433923 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6J1IMI5	4.6e-40	85.12	uncharacterized protein LOC111478758 OS=Cucurbita maxima OX=3661 GN=LOC111478758...	[more]
A0A6J1EC45	3.9e-39	85.12	uncharacterized protein LOC111432982 OS=Cucurbita moschata OX=3662 GN=LOC1114329...	[more]
A0A5A7UG11	6.7e-39	82.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh07G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926965.1	1.4e-51	100.00	uncharacterized protein LOC111433923 [Cucurbita moschata] >XP_023003712.1 unchar...	[more]
KAG6594375.1	4.4e-45	100.00	hypothetical protein SDJN03_10928, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038877484.1	9.5e-40	85.95	uncharacterized protein LOC120069761 [Benincasa hispida]	[more]
XP_022978967.1	9.5e-40	85.12	uncharacterized protein LOC111478758 [Cucurbita maxima]	[more]
XP_023544802.1	9.5e-40	85.95	uncharacterized protein LOC111804285 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh07G000110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30880.1	8.1e-13	49.19	unknown protein; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..120
None	No IPR available	PANTHER	PTHR36320:SF1	OS04G0611300 PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR36320	OS04G0611300 PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000110.1	CmoCh07G000110.1	mRNA