CmoCh06G017320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G017320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	UPF0664 stress-induced protein C29B12.11c
Location	Cmo_Chr06: 11876850 .. 11880885 (+)
RNA-Seq Expression	CmoCh06G017320
Synteny	CmoCh06G017320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAAACAGCTTTCCAATAATCTCCCTATAACCAAGTGGGTATGAAGTGGAATAACATTACCTGTAGGAAATATCCAAGACGAGACCTCTGAAGCAAGCCAGATCGTCACTCTCAAACTCGTAATCATAGTCAATATCAAGAATGGCGTCGTCTCCGCTAACGCTCTCACCCCTCACACCGACACGCTGAGCGGATTTCCTCAAAGCTGAAGCCGAGGACGACGAAGGGGAAAGTCCAGTGGAGGAGGCACCGGATAAAGGAGTTCTTCGCTTAAGGGTTCGTACTGATCTGAGCTTGTGTCTCGAACGATCTTTTGGTTCTGAACCGAATGGCACTCCGTCTCCGTTGAGCAACAACTTAACCCGACTGTGTGCAGTGAATTGGGCCATTTGAGCACTTAGATAGGGTTCCTGCGAGCAGTCAATGGAGATCAAAATCGAGACTGCTCATGAGATGAAGAAATCAAACCCCAAAAGTTGAAGGGAAGAAGAAAAGAGAGCATTACATGCGCACGGAAAAGCCCATCACCACATATTTTTCCCGCACATTTCACTTCATATCTTCTGCTTCCAAAAATTGTTTTAATAATAAAAAAAACAACTTTATCAACAAAACAAATTAATTAGACAGTATTTTCACATAATAATTTTTAAAGTAAAAAAATTTAATTATTACAATATAGTTTGGTCGATGATCAATCGTAATCTTATCCACTAATGATTGCCCATTTTTTGTGGAAGGGACCTTTAAATTTCCCCAATTTTCCTCGAGGAGCGAGCCTCGTTCCCGCTAATATCCGTCAATTCTGAAGCTTCTCCCTGTGCAACCGAGGAATTTTTCCAGAAGGTCGTGGAAGTGGGCAGACAGCTGAGTTTTTAATCTCGCGTCTTCATAGGCCGGCTCAATTCTCATCTTCCATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGTTAGTTCCATATCCCTTTTATTTCCTTTTCGATGCCCATTACGTGACCGACCATTATAATTGCACTAGGCTGGGAGTTTGCTGTGTGGAAATTACCTAAAATTGTGTCGGTTTCTTATTTGGTTTCTGCTTTTCTAAAATTTCTGTCTGAATTGGTAATCCGATTTGCGAATTTGAGTTGATTCCTGGCGTAGAGAAATCCTGATTGACCTTGATTGTGTGAACGTCTTTTATAATTTTATTCGTATAAGCGAGGAGGAGCCGTTGAATTTAGGAACTTGATTTTTGTATTACAACATTAGAAATTTTTTGGGGTTCGTGGAATTTTTCATTGCGTTAATTCGTTTGACTTTGTTCAATTCATGCATAATTTTCTCTTCTTTTTCATTTTGAAAACCAGTGTCCGGTCATTGATCCGCCATATGTAACTTACCAAGCTGAAGGGTACGAACCAGTTGGGATTTATAGAATAATATTGTTGGACTTGTAATACCTGGATCTAGACTTCTATGGTCGAGGGGTTTTGGAGATCTCGGAATTTTCTCTGTCGCTTACTATTGTTATATTATTCGTATTAAGTGGTTTCAGGATCTGTCTCTCTCTTTTCAGATTCAGTTTCTGGCAGTTTGATTATTTTTACTTGTGAAGGTATTCTGAACGAGGGAAGCAGGGTAACTAGCTAGATTGGAAAAAAAAAAAATTTAAGAATTCGTTACTTAATTTTTTAGAACATTACGAGGCTGTCTAAAACTTTTTAAAACAATCTTAGGCGTGAAAATGTTCATACAAAAGGTTAGAAGCTTTATTTAGGGTTGTAATGGCCGTGAAAGGGGAGTACTCATCAGTCATCTCATTAACCGGAAAACAATTTCTTTGAGTCGAGAAGGTACATTGTCACTCGTTAACCTCACCCTTTGAAATGTGGCTTTAGTGTCTATTTAGGTTTGGCAGTTTTGTCTCCAGAAAAATCCTTGTGGCACAATCTACTGACAAGTAAATATAGGCTGGTCTACTCGGAAGGACGAAAGGTTTAAGTTGAAAAGGTTGGTCTACTCGGAAGGATGAAAGTTGAGTACTAGAGCCTTGACAATGTTAGTAATACCTTAGTTGGGGTGGTGTCTAGGTTGGCTGTCCGCCCCTCAAGCTCATTTTTCTAAGGTTTGACGGTATAGCTGGTGATAAATCTTGTCTGGACTGGTTGTTATCTCTTGGCTTGTATAGATCTTGTTGCACGATGGCAGAGGAGGTTCTAGATCATCCTCCTTTCGGAGATATGGGAAAAGTTTGTGGAAGACTACTTAATTAGCCATCTTGTTGAATATGTGGTTTGAAAGGAATAGAGGATTTGTTAGGTGTGGAGAGGTCTTGGGAGGTGGTCTAGTCTATGGTTAGTTTTAGTACCTCCTTTAGGTATAGTGGCAAAGGAGTCTTGCAGTTATCCTTTGTTAGTTCTTAAATTTGTATCTCTTTCACGTAGTTTGGTTTTTGTTTTGGTCCCTTCTATCCCTTGTTGGTTTCTTATATGCTGGTTGTATATCCTTTCATTTTATATTCTCTATGGTTTTTCATTAAAGAGATTTTTTTGTCAAGAATTTTCAATGACAAAGAGTTAATGGAAGGAAAGCATTTGGGATGGGATATAGCAACGAGCCTCAATTTTGTACTCCAAGCCTGTTGTCTCATGATGCTGAAGGTTCTTATGTTTCTGTTGTCTCTGAAAAGGGGCTGTTCTTTGGCGTGATTTATTTTTCTCTTTTTGTGGGGCATTTAGCATGAGGCAGATAGTATGATTCAAAGGGGTCAAGTGTTCTTTAGGCAGATTCTGTTAACTAATTTGTTAAGTCTTATTTTTAAGTTTCTATACTATAAAAATTAGAAGTTTTTATCCAATTCTGACAGATTTTATTAGTAATCAATGCCTCCTTTGTATCAATTTGGATGAACTTGGTCATAAATGGCAGAGATGATGCATAAGCGTAATGTGTTTTTACTCTCTCTTTTAGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTGTATTTCTAGAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTGTATTCCTTTTTCCTTGATAGCCAAATCACCACCATCATATATGTCTTATTGGAGCCCATTTTTTTTGTTTGGCTCTCATTTGTGGGCTTTATTTTTGTATACCCTAATGTTCTCTCATTCTGTCTAATATTTTGCTTGTTTCTTTTGCAGCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTAAGCATGCGAACTATTAAATTCATCTTGTTTAGTGTGTCCCGAGTCCCACTTCAGGCAGCTTAATCAATAGCTTATCTCACAGGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCGTAAGTTATCATTCGTCAAATTCGATCTCACGGTCAAGTTAAAATTTTTCATTTGATTATGTTTTTGGTGTTTAACTTGCAGATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

mRNA sequence

ATTCAAACAGCTTTCCAATAATCTCCCTATAACCAAGTGGGTATGAAGTGGAATAACATTACCTGTAGGAAATATCCAAGACGAGACCTCTGAAGCAAGCCAGATCGTCACTCTCAAACTCGTAATCATAGTCAATATCAAGAATGGCGTCGTCTCCGCTAACGCTCTCACCCCTCACACCGACACGCTGAGCGGATTTCCTCAAAGCTGAAGCCGAGGACGACGAAGGGGAAAGTCCAGTGGAGGAGGCACCGGATAAAGGAGTTCTTCGCTTAAGGGTTCGTACTGATCTGAGCTTGTGTCTCGAACGATCTTTTGGTTCTGAACCGAATGGCACTCCGTCTCCGTTGAGCAACAACTTAACCCGACTGTGTGCAGTGAATTGGGCCATTTGAGCACTTAGATAGGGTTCCTGCGAGCAGTCAATGGAGATCAAAATCGAGACTGCTCATGAGATGAAGAAATCAAACCCCAAAAGTTGAAGGGAAGAAGAAAAGAGAGCATTACATGCGCACGGAAAAGCCCATCACCACATATTTTTCCCGCACATTTCACTTCATATCTTCTGCTTCCAAAAATTGTTTTAATAATAAAAAAAACAACTTTATCAACAAAACAAATTAATTAGACAGTATTTTCACATAATAATTTTTAAAGTAAAAAAATTTAATTATTACAATATAGTTTGGTCGATGATCAATCGTAATCTTATCCACTAATGATTGCCCATTTTTTGTGGAAGGGACCTTTAAATTTCCCCAATTTTCCTCGAGGAGCGAGCCTCGTTCCCGCTAATATCCGTCAATTCTGAAGCTTCTCCCTGTGCAACCGAGGAATTTTTCCAGAAGGTCGTGGAAGTGGGCAGACAGCTGAGTTTTTAATCTCGCGTCTTCATAGGCCGGCTCAATTCTCATCTTCCATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

Coding sequence (CDS)

ATGGCTCTCAACCCTAATCTATTTCAAAATGGGATGCCCGTTCCCTTCACCAACGAGCTTTTTGTATTGGCTAGAGATGGCGTAGAATTTGTGATTGATAAGATCCCCGGGGCTAATACTGATCGTGTTAAAGCAAAAGGGACTATTTACTTGTCAAATGTACGCATGGTCTTTGTGTCAAGTAAACCAGATCCATGGTTTACTGCATTTGACATGCCTTTGGTATGTACTTTCACTTTGTATGTTTACTTTCACTTTGTCTATCTTTGGAGGCTAACTAGTGGAATTTTTGCTTGTATAAACAAAAGGGTTTTCGTTGTGAATCAGTTTGTTGTTGAATTCATTGCATCATTTAAACCAAATTTAGACTTTGCACCTTCTGCCCTAGCAATTATCCTTCTCTTTGTTCATGATGAAAAATTTAACCAGCCAATATTTTTCTGCAACAATATCTCTGGATTAGTCGAACCTGTGGTGCCTGATGACCAGCACAGAGCTCTCTATTCGACACACTCGTTTAAGATTTTGTTCAAGGAAGGGGGATGTGGTACCTTTGTACCACTCTTCTTCAACCTGCTGTCTTCAGTGAGGCAATACAATCAATACACGAATGCAGGTCCTCGAGTCGATCCATTGCAGGCAGCACAAACTCCTGTCGATGAAATGATGAGACATGCATATGTGGACCCACATGATCCGACCAAAATCTTCTTACAACAGCCATCGACAGAGTCCCAGTTAAGGCGGCGCACCTACCAGTCCCAACCAGCTGAAAATGCAATGTGA

Protein sequence

MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVSSKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKPNLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEGGCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQPSTESQLRRRTYQSQPAENAM

Homology

[Close]

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL
Match: A0A6J1EXS2 (uncharacterized protein LOC111439171 OS=Cucurbita moschata OX=3662 GN=LOC111439171 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.2e-106
Identity = 202/261 (77.39%), Postives = 202/261 (77.39%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           SKPDPWFTAFDMP                                               
Sbjct: 61  SKPDPWFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           PSTESQLRRRTYQSQPAENAM
Sbjct: 241 PSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL
Match: A0A6J1I7J8 (uncharacterized protein LOC111470726 OS=Cucurbita maxima OX=3661 GN=LOC111470726 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.2e-106
Identity = 201/261 (77.01%), Postives = 202/261 (77.39%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           SKPDPWFTAFDMP                                               
Sbjct: 61  SKPDPWFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMR+AYVDPHDPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRYAYVDPHDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           PSTESQLRRRTYQSQPAENAM
Sbjct: 241 PSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL
Match: A0A5A7T2S6 (UPF0664 stress-induced protein C29B12.11c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00010 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 190/261 (72.80%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPVFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQPAENAM
Sbjct: 241 PTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL
Match: A0A0A0LI97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 190/261 (72.80%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPVFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQPAENAM
Sbjct: 241 PATESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL
Match: A0A1S3CPS8 (uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 190/261 (72.80%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPVFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQPAENAM
Sbjct: 241 PTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: XP_022932704.1 (uncharacterized protein LOC111439171 [Cucurbita moschata] >XP_023539771.1 uncharacterized protein LOC111800356 [Cucurbita pepo subsp. pepo] >KAG6597720.1 hypothetical protein SDJN03_10900, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029167.1 SPAC29B12.11c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.0 bits (1016), Expect = 2.6e-106
Identity = 202/261 (77.39%), Postives = 202/261 (77.39%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           SKPDPWFTAFDMP                                               
Sbjct: 61  SKPDPWFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           PSTESQLRRRTYQSQPAENAM
Sbjct: 241 PSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: XP_022972085.1 (uncharacterized protein LOC111470726 [Cucurbita maxima])

HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-105
Identity = 201/261 (77.01%), Postives = 202/261 (77.39%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           SKPDPWFTAFDMP                                               
Sbjct: 61  SKPDPWFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMR+AYVDPHDPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRYAYVDPHDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           PSTESQLRRRTYQSQPAENAM
Sbjct: 241 PSTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: XP_038903065.1 (uncharacterized protein LOC120089752 [Benincasa hispida])

HSP 1 Score: 369.8 bits (948), Expect = 2.0e-98
Identity = 189/261 (72.41%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPIFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+VHDEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVHDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPT+IFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQP ENAM
Sbjct: 241 PTTESQLRRRTYQSQPVENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: XP_004141150.1 (uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hypothetical protein Csa_002671 [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 2.6e-98
Identity = 190/261 (72.80%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPVFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQPAENAM
Sbjct: 241 PATESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. NCBI nr
Match: XP_008465172.1 (PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo] >KAA0037680.1 UPF0664 stress-induced protein C29B12.11c [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.6e-98
Identity = 190/261 (72.80%), Postives = 197/261 (75.48%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNPNLF NGMPVPFTNELFVLARDGVEF IDKIPGAN+DRVKAKGTIYLSNVRMVFVS
Sbjct: 1   MALNPNLFPNGMPVPFTNELFVLARDGVEFEIDKIPGANSDRVKAKGTIYLSNVRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           +KPDP FTAFDMP                                               
Sbjct: 61  NKPDPVFTAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL+V DEKFNQPIFFCNNISGLVEPVVP+DQHRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYVRDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTNAGPRVDPLQAAQTPVDEMMRHAYVDPHDPTKIFLQQ 240
           GCGTFVPLFFNLLSSVRQYNQ+ NAGPRVDPLQAAQTPVDEMMRHAYVDP+DPTKIFLQQ
Sbjct: 181 GCGTFVPLFFNLLSSVRQYNQHMNAGPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQQ 202

Query: 241 PSTESQLRRRTYQSQPAENAM 262
           P+TESQLRRRTYQSQPAENAM
Sbjct: 241 PTTESQLRRRTYQSQPAENAM 202

[Close]

BLAST of CmoCh06G017320 vs. TAIR 10
Match: AT5G11680.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 293.1 bits (749), Expect = 2.2e-79
Identity = 155/266 (58.27%), Postives = 171/266 (64.29%), Query Frame = 0


Query: 1   MALNPNLFQNGMPVPFTNELFVLARDGVEFVIDKIPGANTDRVKAKGTIYLSNVRMVFVS 60
           MALNP L  NGMPVPF NE+FVL RDGVEF +DKIPG +   VKAKG IYLSN+RMVFVS
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query: 61  SKPDPWFTAFDMPLVCTFTLYVYFHFVYLWRLTSGIFACINKRVFVVNQFVVEFIASFKP 120
           SKP   F AFDMP                                               
Sbjct: 61  SKPVDNFVAFDMP----------------------------------------------- 120

Query: 121 NLDFAPSALAIILLFVHDEKFNQPIFFCNNISGLVEPVVPDDQHRALYSTHSFKILFKEG 180
                       LL++H EKFNQPIF CNNI+G VEPVVP+++HRALYSTHSFKILFKEG
Sbjct: 121 ------------LLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKEG 180

Query: 181 GCGTFVPLFFNLLSSVRQYNQYTN-------AGPRVDPLQAAQTPVDEMMRHAYVDPHDP 240
           GCGTFVPLF NL+SSVRQYN+          A P VDPLQAAQTPVDEMMRHAYVDP+DP
Sbjct: 181 GCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPNDP 207

Query: 241 TKIFLQQPSTESQLRRRTYQSQPAEN 260
           T+I+LQQPS ESQLRRR Y S  AE+
Sbjct: 241 TRIYLQQPSGESQLRRRAYHSGAAEH 207

The following BLAST results are available for this feature:

BLAST of CmoCh06G017320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXS2	1.2e-106	77.39	uncharacterized protein LOC111439171 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1I7J8	6.2e-106	77.01	uncharacterized protein LOC111470726 OS=Cucurbita maxima OX=3661 GN=LOC111470726...	[more]
A0A5A7T2S6	1.2e-98	72.80	UPF0664 stress-induced protein C29B12.11c OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LI97	1.2e-98	72.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G845430 PE=4 SV=1	[more]
A0A1S3CPS8	1.2e-98	72.80	uncharacterized protein LOC103502837 OS=Cucumis melo OX=3656 GN=LOC103502837 PE=...	[more]

BLAST of CmoCh06G017320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932704.1	2.6e-106	77.39	uncharacterized protein LOC111439171 [Cucurbita moschata] >XP_023539771.1 unchar...	[more]
XP_022972085.1	1.3e-105	77.01	uncharacterized protein LOC111470726 [Cucurbita maxima]	[more]
XP_038903065.1	2.0e-98	72.41	uncharacterized protein LOC120089752 [Benincasa hispida]	[more]
XP_004141150.1	2.6e-98	72.80	uncharacterized protein LOC101208147 [Cucumis sativus] >KGN59776.1 hypothetical ...	[more]
XP_008465172.1	2.6e-98	72.80	PREDICTED: uncharacterized protein LOC103502837 [Cucumis melo] >KAA0037680.1 UPF...	[more]

BLAST of CmoCh06G017320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11680.1	2.2e-79	58.27	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..261
None	No IPR available	PANTHER	PTHR31606:SF11	WW DOMAIN-BINDING PROTEIN 2-LIKE	coord: 119..257
None	No IPR available	PANTHER	PTHR31606:SF11	WW DOMAIN-BINDING PROTEIN 2-LIKE	coord: 1..76
None	No IPR available	CDD	cd13214	PH-GRAM_WBP2	coord: 29..194 e-value: 1.3293E-28 score: 103.023
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 1..75
IPR044852	WW domain-binding protein 2-like	PANTHER	PTHR31606	WW DOMAIN BINDING PROTEIN 2, ISOFORM E	coord: 1..76
IPR044852	WW domain-binding protein 2-like	PANTHER	PTHR31606	WW DOMAIN BINDING PROTEIN 2, ISOFORM E	coord: 119..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017320.1	CmoCh06G017320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity