CmoCh06G017010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G017010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein LAX PANICLE 2-like
LocationCmo_Chr06: 11726751 .. 11727856 (+)
RNA-Seq ExpressionCmoCh06G017010
SyntenyCmoCh06G017010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGTGATTATGATGATCTACTTCTCCAATCCCATGGACTCATGAATATGATCACTCAAGCACCACAGCCCCTACAACCAACAACCCTAATCTTTTTCTTAATGGCTCTCTCTTCTTCTTTTCTCCCTTCATACAAACCCCTACTCTTCCATGGCCCCCAAAATTAGCCACCTTTCTCCACCTATTTCCCTCCCTCCATGGCGCCCTCCCCTCACCAAAACATCCCCTTACTTCTCCAACCCCTCGCCTCTCCGGGTCGCCGCCCATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAGTAAGTAAAAAAAATAAAAATAAAAAACAAAAAGATTTCTCCTTAATCTTGTTCTTAATTACATATCATAATCAAATTGTTCTCTAAGCCTTTGAATTTCTGGGTTTTGTTAATGCAGATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

mRNA sequence

GGTGTGATTATGATGATCTACTTCTCCAATCCCATGGACTCATGAATATGATCACTCAAGCACCACAGCCCCTACAACCAACAACCCTAATCTTTTTCTTAATGGCTCTCTCTTCTTCTTTTCTCCCTTCATACAAACCCCTACTCTTCCATGGCCCCCAAAATTAGCCACCTTTCTCCACCTATTTCCCTCCCTCCATGGCGCCCTCCCCTCACCAAAACATCCCCTTACTTCTCCAACCCCTCGCCTCTCCGGGTCGCCGCCCATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

Coding sequence (CDS)

ATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

Protein sequence

MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTNSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK
Homology
BLAST of CmoCh06G017010 vs. ExPASy Swiss-Prot
Match: G3XKQ9 (Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.5e-04
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0

Query: 200 VRIINPPR--RPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
           +R++ PP      +G+WF L+A   Q ++PFLPQI ++YLRIK
Sbjct: 272 IRVVLPPSAVAAAAGVWFVLQAAPLQGREPFLPQIPRSYLRIK 314

BLAST of CmoCh06G017010 vs. ExPASy TrEMBL
Match: A0A6J1EXF4 (uncharacterized protein LOC111439151 OS=Cucurbita moschata OX=3662 GN=LOC111439151 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 6.4e-134
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN 60
           MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN
Sbjct: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN 60

Query: 61  SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT 120
           SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT
Sbjct: 61  SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT 120

Query: 121 PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP 180
           PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP
Sbjct: 121 PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP 180

Query: 181 FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 240
           FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK
Sbjct: 181 FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 240

BLAST of CmoCh06G017010 vs. ExPASy TrEMBL
Match: A0A6J1I8S9 (protein LAX PANICLE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470706 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 7.4e-114
Identity = 216/245 (88.16%), Postives = 217/245 (88.57%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPS-----AGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADD 60
           MTMLPA T LSQ  PS      GCG DHLMNAAPP ISENYYY YSHPYLI L PPMADD
Sbjct: 1   MTMLPARTRLSQHHPSGGSYVGGCGGDHLMNAAPPLISENYYYCYSHPYLIALHPPMADD 60

Query: 61  DSTTNSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTS 120
           DSTTNSFNEEPP NRDDGWLQLSIGRGRP  TSNLVELDLLPGGGGDNP      TA TS
Sbjct: 61  DSTTNSFNEEPPSNRDDGWLQLSIGRGRPGRTSNLVELDLLPGGGGDNP------TAATS 120

Query: 121 RDFLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSS 180
           RDF TPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRP+SAAS SSSFLPVGGRRSS
Sbjct: 121 RDFFTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPMSAASPSSSFLPVGGRRSS 180

Query: 181 YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKN 240
           YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSK PFLPQISKN
Sbjct: 181 YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKHPFLPQISKN 239

BLAST of CmoCh06G017010 vs. ExPASy TrEMBL
Match: A0A0A0KYQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G008840 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.9e-62
Identity = 149/264 (56.44%), Postives = 169/264 (64.02%), Query Frame = 0

Query: 20  GADHLMNAAPPPISENYYYYY---SHPYLIPLPPPMADDDSTTNSFN-EEPPFNRDDGWL 79
           GADHLMN   P  ++ YYYYY    +PYLI   PPMA+ DSTTNS N ++ P NRDDGWL
Sbjct: 17  GADHLMNGGAPLCNQYYYYYYLGSDNPYLISPDPPMAEGDSTTNSLNHDQAPSNRDDGWL 76

Query: 80  QLSIGRG-----------------RPPTTSNLVELDLLPGGGGDNPAATATATATTSRDF 139
           QLSIG                       +S LVELDLLPG G D     +   +    DF
Sbjct: 77  QLSIGGSGSGGNVTGLKRDQRESMTSERSSGLVELDLLPGSGRD----ISMNYSRWVSDF 136

Query: 140 LTPEAATTARSET------GMQLFFGTPTSSNFVQQEINWAFRPI--------------S 199
            +PE  TT+++ET      G+ LFFGT +SSNFVQQEINWAFRP+              +
Sbjct: 137 SSPETTTTSKTETGAETGIGLPLFFGTSSSSNFVQQEINWAFRPVTGIGTGVPSSSSPST 196

Query: 200 AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGPSSDVRIINPPRRPHSGIWFT 241
           +A SSS  LP+ GRRSSYLG P IQFQS GV      AGPSSDVRIINPPRRPHSGIWFT
Sbjct: 197 SAVSSSYSLPMSGRRSSYLGRPLIQFQSLGVDMATATAGPSSDVRIINPPRRPHSGIWFT 256

BLAST of CmoCh06G017010 vs. ExPASy TrEMBL
Match: A0A5D3E134 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002540 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 5.9e-55
Identity = 142/271 (52.40%), Postives = 163/271 (60.15%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYY--------SHPYLIPLPPPM 60
           MTM+ A   L+        GADHLMN   P  ++ YYYYY        S+PYLI L PPM
Sbjct: 1   MTMVAA---LNHFSKHQHGGADHLMNGGAPLCNQYYYYYYYYYNYLGSSNPYLISLDPPM 60

Query: 61  ADDDSTTNSFN-EEPPFNRDDGWLQLSIGRG-----------------RPPTTSNLVELD 120
           A+DDSTTNS N ++ P N DDGWLQLSIG                    P  +S LVELD
Sbjct: 61  AEDDSTTNSLNHDQAPSNTDDGWLQLSIGGSGGSGNVTGLKHDERESMTPGRSSGLVELD 120

Query: 121 LLPGGGGDNPAATATATATTSRDFLTPEAATTARSET------GMQLFFGTPTSSNFVQQ 180
           LLPGGG D     +   +    DF +PE  TT+++ET      G+ LFFGT +SSNFVQQ
Sbjct: 121 LLPGGGRD----ISMNYSRWVSDFSSPETTTTSKTETGAEIGIGLPLFFGTSSSSNFVQQ 180

Query: 181 EINWAFRPI--------------SAASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AG 224
           EINWAFRP+              ++A SSS  LP+ GRRSSYLG P IQ QS GV     
Sbjct: 181 EINWAFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATA 240

BLAST of CmoCh06G017010 vs. ExPASy TrEMBL
Match: A0A5A7TLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002530 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 141/267 (52.81%), Postives = 162/267 (60.67%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYY----YSHPYLIPLPPPMADDD 60
           MTM+ A   L+        GADHLMN   P  ++ YYYY     S+PYLI L PPMA+DD
Sbjct: 1   MTMVAA---LNHFSKHQHGGADHLMNGGAPLCNQYYYYYNYLGSSNPYLISLDPPMAEDD 60

Query: 61  STTNSFN-EEPPFNRDDGWLQLSIGRG-----------------RPPTTSNLVELDLLPG 120
           STTNS N ++ P N DDGWLQLSIG                    P  +S LVELDLLPG
Sbjct: 61  STTNSLNHDQAPSNTDDGWLQLSIGGSGGSGNVTGLKHDQRESMTPGRSSGLVELDLLPG 120

Query: 121 GGGDNPAATATATATTSRDFLTPEAATTARSET------GMQLFFGTPTSSNFVQQEINW 180
           GG D     +   +    DF +PE  TT+++ET      G+ LFFGT +SSNFVQQEINW
Sbjct: 121 GGRD----ISMNYSRWVSDFSSPETTTTSKTETGAEIGIGLPLFFGTSSSSNFVQQEINW 180

Query: 181 AFRPI--------------SAASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGP 224
           AFRP+              ++A SSS  LP+ GRRSSYLG P IQ QS GV      AGP
Sbjct: 181 AFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATATAGP 240

BLAST of CmoCh06G017010 vs. NCBI nr
Match: XP_022932677.1 (uncharacterized protein LOC111439151 [Cucurbita moschata])

HSP 1 Score: 486.5 bits (1251), Expect = 1.3e-133
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN 60
           MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN
Sbjct: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADDDSTTN 60

Query: 61  SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT 120
           SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT
Sbjct: 61  SFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFLT 120

Query: 121 PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP 180
           PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP
Sbjct: 121 PEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGP 180

Query: 181 FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 240
           FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK
Sbjct: 181 FIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 240

BLAST of CmoCh06G017010 vs. NCBI nr
Match: KAG6597691.1 (Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 234/243 (96.30%), Postives = 237/243 (97.53%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYL-IPLPPPMADDDSTT 60
           MTMLPAHTPLSQL PSAGCGADHLMNAAPPPISE+YYYYYSHPYL IPLPPPMADDDSTT
Sbjct: 1   MTMLPAHTPLSQLHPSAGCGADHLMNAAPPPISEDYYYYYSHPYLIIPLPPPMADDDSTT 60

Query: 61  NSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPA--ATATATATTSRD 120
           N+FNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPG GGDNPA  ATATATATTSRD
Sbjct: 61  NTFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGRGGDNPAATATATATATTSRD 120

Query: 121 FLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL 180
            LTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL
Sbjct: 121 LLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL 180

Query: 181 GGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL 240
           GGPFIQFQSSG+QAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL
Sbjct: 181 GGPFIQFQSSGIQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL 240

BLAST of CmoCh06G017010 vs. NCBI nr
Match: KAG7029135.1 (E3 ubiquitin protein ligase DRIP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.1 bits (1180), Expect = 2.3e-125
Identity = 232/243 (95.47%), Postives = 235/243 (96.71%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYL-IPLPPPMADDDSTT 60
           MTMLPAHTPLSQL PSAGCGADHLMNAAPPPISE+YYYYYS PYL IPLPPPMADDDSTT
Sbjct: 1   MTMLPAHTPLSQLHPSAGCGADHLMNAAPPPISEDYYYYYSPPYLIIPLPPPMADDDSTT 60

Query: 61  NSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPA--ATATATATTSRD 120
           N+FNEE PFNRDDGWLQLSIGRGRPPTTSNLVELDLLPG GGDNPA  ATATATATTSRD
Sbjct: 61  NTFNEESPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGRGGDNPAATATATATATTSRD 120

Query: 121 FLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL 180
            LTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL
Sbjct: 121 LLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYL 180

Query: 181 GGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL 240
           GGPFIQFQSSG+QAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL
Sbjct: 181 GGPFIQFQSSGIQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYL 240

BLAST of CmoCh06G017010 vs. NCBI nr
Match: XP_022972063.1 (protein LAX PANICLE 2-like [Cucurbita maxima])

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-113
Identity = 216/245 (88.16%), Postives = 217/245 (88.57%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPS-----AGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMADD 60
           MTMLPA T LSQ  PS      GCG DHLMNAAPP ISENYYY YSHPYLI L PPMADD
Sbjct: 1   MTMLPARTRLSQHHPSGGSYVGGCGGDHLMNAAPPLISENYYYCYSHPYLIALHPPMADD 60

Query: 61  DSTTNSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTS 120
           DSTTNSFNEEPP NRDDGWLQLSIGRGRP  TSNLVELDLLPGGGGDNP      TA TS
Sbjct: 61  DSTTNSFNEEPPSNRDDGWLQLSIGRGRPGRTSNLVELDLLPGGGGDNP------TAATS 120

Query: 121 RDFLTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSS 180
           RDF TPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRP+SAAS SSSFLPVGGRRSS
Sbjct: 121 RDFFTPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPMSAASPSSSFLPVGGRRSS 180

Query: 181 YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKN 240
           YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSK PFLPQISKN
Sbjct: 181 YLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKHPFLPQISKN 239

BLAST of CmoCh06G017010 vs. NCBI nr
Match: XP_023540396.1 (uncharacterized protein LOC111800782 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.1 bits (1037), Expect = 8.7e-109
Identity = 208/241 (86.31%), Postives = 213/241 (88.38%), Query Frame = 0

Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYYSHPYLIPLPPPMA-DDDSTT 60
           MTMLPAHTPLSQL PS GCGA HLMNAAPP +SENYYYYYSHPYLI L PPMA DDDSTT
Sbjct: 1   MTMLPAHTPLSQLHPSRGCGAAHLMNAAPPLVSENYYYYYSHPYLIALHPPMADDDDSTT 60

Query: 61  NSFNEEPPFNRDDGWLQLSIGRGRPPTTSNLVELDLLPGGGGDNPAATATATATTSRDFL 120
           N+FN++P  N DDGWLQLSIGR RPPTTSNLVELDLLPGGGGDNP       AT SRDFL
Sbjct: 61  NTFNQQPSSNTDDGWLQLSIGRRRPPTTSNLVELDLLPGGGGDNP-------ATASRDFL 120

Query: 121 TPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGG 180
           TPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRP+ AASSSSSFLPVGGR       
Sbjct: 121 TPEAATTARSETGMQLFFGTPTSSNFVQQEINWAFRPMLAASSSSSFLPVGGR------S 180

Query: 181 PFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRI 240
           PFIQFQSSGVQAG AGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRI
Sbjct: 181 PFIQFQSSGVQAGDAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRI 228

BLAST of CmoCh06G017010 vs. TAIR 10
Match: AT5G13250.1 (RING finger protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-15
Identity = 71/216 (32.87%), Postives = 102/216 (47.22%), Query Frame = 0

Query: 54  DDDSTTNSFNE------EPPFNRDDGWLQLSIGRGR--------------PPTT--SNLV 113
           D++S  N+ N       E    R  GWL+LS+G                  PT    + +
Sbjct: 95  DNNSNNNNINNNNNNEAEDHEMRQQGWLRLSLGHEEDVKPDLDHRQQHQTDPTARRDSFL 154

Query: 114 ELDLLPGGGGDN-----PAATATATATTSRDFLTPEAATTARSETGMQLFFGTPTSSNFV 173
           EL+L  GG         P ++       +   +        R +  +  +      + FV
Sbjct: 155 ELNLSSGGSNREEEVGLPLSSLFHHQHQAGGMMINPLMFHTRPQDMIGPWAAAAFRTPFV 214

Query: 174 QQEINWAFRPISAASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGPSSDVRIIN 233
            Q +    +P S++SS S  +P+ G+   Y G    Q Q  G     G AGPSS +R+I+
Sbjct: 215 PQNLT---QP-SSSSSGSLMMPLMGQ---YFGRSSFQPQLIGNDNPDGVAGPSSSLRVID 274

Query: 234 PPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
           PPRRPHSGIWF L+A +NQ+ +PFLPQI K+YLRIK
Sbjct: 275 PPRRPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIK 303

BLAST of CmoCh06G017010 vs. TAIR 10
Match: AT1G28080.1 (RING finger protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 71/239 (29.71%), Postives = 105/239 (43.93%), Query Frame = 0

Query: 29  PPPISENYYYYYSHPYLIPLPPPMADDDSTTNSFNEEPPFNRDDGWLQLSIGRGRPPTTS 88
           P P S +YY   S P       P  D      S N +   N+D  WL+L IG       S
Sbjct: 45  PAPGSTDYYNISSSPVKDDGTAPKND---VVCSINVDD--NKDKSWLRLGIGPEENTDGS 104

Query: 89  NLVELDLLPGGGGDNPA------ATATATATTSRDFLTPEAA------------------ 148
             ++      G G   +      ++++   ++S D L  +                    
Sbjct: 105 YKLQRCCSKNGSGRENSLELSLFSSSSTAVSSSIDHLPTQPLQLPYHHDQLLTMRGPSLV 164

Query: 149 ---TTARSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGPF 208
                 + +T +   F  P+S  ++ Q +   FRP     SS S   V    S       
Sbjct: 165 YNHQLMKPQTLLNRGFSFPSSKPWIPQYMA-PFRP-----SSLSDRDVTNNNS------- 224

Query: 209 IQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
              +S  V  GGAGPSS+ R+++PPRRPHSG+WF L+A + Q ++PFLPQ++K+YLRIK
Sbjct: 225 -LSRSCCVDEGGAGPSSEFRVLDPPRRPHSGLWFLLQASQFQEREPFLPQVNKSYLRIK 264

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
G3XKQ93.5e-0446.51Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1EXF46.4e-134100.00uncharacterized protein LOC111439151 OS=Cucurbita moschata OX=3662 GN=LOC1114391... [more]
A0A6J1I8S97.4e-11488.16protein LAX PANICLE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470706 PE=4 SV=1[more]
A0A0A0KYQ82.9e-6256.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G008840 PE=4 SV=1[more]
A0A5D3E1345.9e-5552.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TLY82.3e-5452.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
XP_022932677.11.3e-133100.00uncharacterized protein LOC111439151 [Cucurbita moschata][more]
KAG6597691.11.9e-12796.30Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7029135.12.3e-12595.47E3 ubiquitin protein ligase DRIP1, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022972063.11.5e-11388.16protein LAX PANICLE 2-like [Cucurbita maxima][more]
XP_023540396.18.7e-10986.31uncharacterized protein LOC111800782 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G13250.15.9e-1532.87RING finger protein [more]
AT1G28080.13.3e-1329.71RING finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..73
NoneNo IPR availablePANTHERPTHR47290:SF4RING FINGER PROTEINcoord: 52..240
IPR044171Protein LAX PANICLE 2-likePANTHERPTHR47290RING FINGER PROTEINcoord: 52..240

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G017010.1CmoCh06G017010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development