CmoCh06G016740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G016740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	54S ribosomal protein L51, mitochondrial
Location	Cmo_Chr06: 11580731 .. 11582923 (+)
RNA-Seq Expression	CmoCh06G016740
Synteny	CmoCh06G016740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTCCAGCCAGCAATTTACTTGGTAGCTTTTCGAATTAAGGTTATTAAACATATAAATTTATTAAATTATTCATAATAATTAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTAAAATTTATTTTTATTTCGATAAAATTTGTAATTTAATTAAAAAAAAGAAAACTACAGGAACCAAACCTCAATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCCGTCTCAGGTATGTCGTTCGTTCTTATTGAAGCTAGAGAGCTTCAGTACAATGTACAATTTGGATATTACAGCTTCTTTTTAGATTCTCATGAGCTGATTCTTCCATTGTTGCTCTTTTCGGTGGAGGGTAGTAGAGATCGTCAAATTTTGATATTCGTTTTTCTTCTTAAGCTTCTAGTATCTTTCTTTTTGGATAACCTTATGTTTCCTTATTCATGGATTCTGTAAATCATTTGATGATTATTGATTTATTCGTTTAGATTTGAGCTCTTGGTTGTGTGAGTTAAGTTCGTATTCGTATATTTCTTTTTCATTTCTTTGATTGCTATTTGGGACTTGATTTTTTTAATCCCTTTTGCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGTTTGTTGGATTGCTGAACCATTATCTACTTGATTATTTCATTACTACTCAGATTTCAGTTCTTAACTGACGGAGGTTTAAATTTTGACCTCAAAATACTTTATATTTCCATGTTCAAGCATAATTATTTTATACTCATCTTGCTTTCTTTTAGCTTACTGGTTTGAGTTGGGTAAAAAGTTAAGGAAATTGCTTGGATTTTTTGAAATGGACTGTGCAAAGAAAAGGTGGGTTTTTTAGGACTAGGGTTCATGGAGAGTGCATAAGACCCTTACTCCTTTCACCACCCATTTTTTCTTTTACCTAAGGCTGAATTCCTTTATTAGTTTTATTTATTATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACATTCTTTATAGTGTGGAAACATCAACCTAGTAGACGCAATTTAAAAATCTTGAGGGGAAGTCCTGAAGTAAAAGTCCAAAGAGAACAATATTTGCTAGCGGTGGGCTTGAGCCGTTACATTTACCTACCTTAAACCTAGAATATCAGATCATCCTAGTTTTCTAGGAATAAGCTCGATGCTTCTGTAGTTTTATTTTATTGTTGTTATAATTATTATCTAGCTTTTACAGTGAATCAAATACTGTTTCACATGTCCTGAATGATTTGTATCTTATCATTGAACTTTCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAAAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAGTAATTCTCTCTCCCTCTCTCAGCTTCTTGCAGTTATAATTTAATAGTGTTTGAACATGGAATTTCCCATATTTCATTGCCTTCACAGAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTGGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGAGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTTCATTTTA

mRNA sequence

GCAACTCCAGCCAGCAATTTACTTGGAACCAAACCTCAATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCCGTCTCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAAAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTGGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGAGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTTCATTTTA

Coding sequence (CDS)

ATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAAAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGA

Protein sequence

MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKAFYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF

Homology

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BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot
Match: Q9UUC8 (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-13
Identity = 33/104 (31.73%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 10  QKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKAFYKNNNQRV 69
           +++  SYC+WGGSS+G++ F+ ++L    K++  ++      +G+HP ++A+Y    ++V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           +C R + A  I   A   R++ G K   +K    + NPSV+G W
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIW 127

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BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot
Match: Q758S3 (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-12
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNPQLKVVRELIRGQHPHLKAFYKN 65
           ++  +K+ + YC+WGGSS+G+R F+ S +L  + +K PQ++    + +  HP LKA Y N
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQ-FEVVAKAGHPVLKAEYIN 79

Query: 66  NNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTK-------NPSVQGTW 114
              + +CVRNL+ + + L    LR + G ++     RH  K       N SV+G W
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVW 129

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BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot
Match: Q06090 (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-10
Identity = 37/114 (32.46%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNP--QLKVVRELIRGQHPHLKAFY 65
           V+  +K+ + +C+WGGSS G+R F+ S +L  + ++ P  Q +V+R   +  HP L+A Y
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMR---KSGHPLLRAEY 79

Query: 66  KNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRH---VTKNPSVQGTW 114
            N  ++V+CVRNL+ + +      L+++ G  +++ +T++    + N SV+G W
Sbjct: 80  TNGREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIW 129

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BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot
Match: Q99N89 (39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKAFYK 63
           R V QLQ+L +S      SSRG R F++ ++ DF ++NP + V         P + A Y 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   V +   EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

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BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot
Match: Q8N983 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKAFYK 63
           R V QLQ+L  S    G SSRG R F++ ++ DF ++NP + +         P + A Y 
Sbjct: 21  RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   +     EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

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BLAST of CmoCh06G016740 vs. ExPASy TrEMBL
Match: A0A6J1EWV2 (54S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439127 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.6e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. ExPASy TrEMBL
Match: A0A6J1I8W1 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470732 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. ExPASy TrEMBL
Match: A0A6J1DVX7 (54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024881 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.2e-57
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQL+VV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKVIKL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. ExPASy TrEMBL
Match: A0A6J1IW90 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479166 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 99/119 (83.19%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFMDS+LP F++KNPQL++V ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYK+NN RV+CV+N+D E+IHLHATRLRNALGRKV+KL+TRHVTKNPS QGTW TDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. ExPASy TrEMBL
Match: A0A061EJZ0 (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao OX=3641 GN=TCM_019878 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFM+SQLP FK+KNPQL+VV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMESQLPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RV+CV+N+  E+I LHA+RLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVICVKNMTPEDILLHASRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 119

[Close]

BLAST of CmoCh06G016740 vs. NCBI nr
Match: XP_022932626.1 (54S ribosomal protein L51, mitochondrial [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. NCBI nr
Match: KAG7029113.1 (mrpl51 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. NCBI nr
Match: XP_022972093.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. NCBI nr
Match: XP_023538941.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDW GSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWSGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of CmoCh06G016740 vs. NCBI nr
Match: KAG6597670.1 (hypothetical protein SDJN03_10850, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 2.8e-60
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD 117
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD 116

[Close]

BLAST of CmoCh06G016740 vs. TAIR 10
Match: AT3G59650.1 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 88/119 (73.95%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LP  K+KNPQL+V+ EL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
            Y+N N+RVVCV+N+D EE+ L+ATRLRN+LGRKV+KL+TRHVTK+PSVQGTW T V+F
Sbjct: 61  IYRNRNERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 119

[Close]

BLAST of CmoCh06G016740 vs. TAIR 10
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-46
Identity = 88/146 (60.27%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LP  K+KNPQL+V+ EL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYK---------------------------NNNQRVVCVRNLDAEEIHLHATRLRNALGR 120
            Y                            N N+RVVCV+N+D EE+ L+ATRLRN+LGR
Sbjct: 61  IYSMYISPLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGR 120

The following BLAST results are available for this feature:

BLAST of CmoCh06G016740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UUC8	7.8e-13	31.73	54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q758S3	6.6e-12	34.48	54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /...	[more]
Q06090	6.2e-10	32.46	54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q99N89	2.0e-08	34.55	39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1...	[more]
Q8N983	3.4e-08	33.64	39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 ...	[more]

BLAST of CmoCh06G016740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWV2	6.6e-63	100.00	54S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8W1	1.9e-62	99.16	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DVX7	9.2e-57	90.76	54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IW90	3.3e-54	83.19	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A061EJZ0	1.4e-52	83.19	Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao ...	[more]

BLAST of CmoCh06G016740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932626.1	1.4e-62	100.00	54S ribosomal protein L51, mitochondrial [Cucurbita moschata]	[more]
KAG7029113.1	3.9e-62	99.16	mrpl51 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022972093.1	3.9e-62	99.16	54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima]	[more]
XP_023538941.1	2.0e-61	98.32	54S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
KAG6597670.1	2.8e-60	99.14	hypothetical protein SDJN03_10850, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh06G016740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59650.1	1.3e-50	73.95	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]
AT3G59650.2	5.5e-46	60.27	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 18..91 e-value: 4.0E-18 score: 76.2
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 26..76 e-value: 3.1E-10 score: 39.8
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..118 e-value: 3.9E-43 score: 148.8
IPR039927	39S ribosomal protein L43/54S ribosomal protein L51	PANTHER	PTHR21396	39S RIBOSOMAL PROTEIN L43	coord: 1..117
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 8..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016740.1	CmoCh06G016740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome