CmoCh06G016630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G016630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF 3339)
Location	Cmo_Chr06: 11524712 .. 11524918 (-)
RNA-Seq Expression	CmoCh06G016630
Synteny	CmoCh06G016630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGCCCTGTTCTTGTGGCAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

mRNA sequence

ATGGCGGATTGGGGCCCTGTTCTTGTGGCAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Coding sequence (CDS)

ATGGCGGATTGGGGCCCTGTTCTTGTGGCAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Protein sequence

MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV

Homology

[Close]

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL
Match: A0A6J1IAL9 (uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 12 MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 71

Query: 61 VLHLHIYV 69
          VLHLHIYV
Sbjct: 72 VLHLHIYV 79

[Close]

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL
Match: A0A6J1F2V4 (uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC111439164 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 VLHLHIYV 69
          VLHLHIYV
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-19
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAV+LF+LLSPGLLFQV G   FIQFGNF+TS  SIF+HSLIFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VLHLHIYV 69
          VL LHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-19
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAV+LF+LLSPGLLFQV G   FIQFGNF+TS  SIF+HSLIFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VLHLHIYV 69
          VL LHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAV+LF+LLSPGLLFQV G  +F++FGNF TS  SIF+HSLIFFAL CLFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 VLHLHIYV 69
          V+ LHIY+
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of CmoCh06G016630 vs. NCBI nr
Match: XP_022972134.1 (uncharacterized protein LOC111470766 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 4.0e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 12 MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 71

Query: 61 VLHLHIYV 69
          VLHLHIYV
Sbjct: 72 VLHLHIYV 79

[Close]

BLAST of CmoCh06G016630 vs. NCBI nr
Match: XP_022932695.1 (uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 uncharacterized protein LOC111799840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 4.0e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 VLHLHIYV 69
          VLHLHIYV
Sbjct: 61 VLHLHIYV 68

[Close]

BLAST of CmoCh06G016630 vs. NCBI nr
Match: XP_038907108.1 (uncharacterized protein LOC120092931 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAVILFILLSPGLLFQVHGA+KFI+FGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 1  MADWGPVFVAVILFILLSPGLLFQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 VLHLHIYV 69
          V+HLHIY+
Sbjct: 61 VIHLHIYI 68

[Close]

BLAST of CmoCh06G016630 vs. NCBI nr
Match: KAG7018460.1 (hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 61/68 (89.71%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV+VAV+LFILLSPGL+ QVHGA+KFI+FGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 VLHLHIYV 69
          VLHLHIY+
Sbjct: 61 VLHLHIYI 68

[Close]

BLAST of CmoCh06G016630 vs. NCBI nr
Match: KAG6582034.1 (hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 61/68 (89.71%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV+VAV+LFILLSPGL+ QVHGA+KFI+FGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 18 MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 77

Query: 61 VLHLHIYV 69
          VLHLHIY+
Sbjct: 78 VLHLHIYI 85

[Close]

BLAST of CmoCh06G016630 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-19
Identity = 41/68 (60.29%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPVLV VILF++L+PGLLFQ+ G  K+++FGNF+TSA S+ +HSL++F+L C+F L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 VLHLHIYV 69
           L +HIY+
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of CmoCh06G016630 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-17
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVL+AVILF++LSPGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 VLHLHIY 68
           +++HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of CmoCh06G016630 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-17
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV+VAVILF+LL+PGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 VLHLHIY 68
           + LHIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of CmoCh06G016630 vs. TAIR 10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 76.6 bits (187), Expect = 8.4e-15
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 3  DWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVL 62
          DWGPVL++VI FI+LSPG+LFQ+ G  K ++FG F+TS  SI +H+L+FFA   +  + L
Sbjct: 4  DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63

Query: 63 HLHIY 68
          H+HIY
Sbjct: 64 HIHIY 68

[Close]

BLAST of CmoCh06G016630 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MADWGPVLVAVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTL 60
          M DWGPV VAV LF+LL+PGLL QV G  + ++FG F+TS  S+ +H+LI+F L C+  L
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 VLHLHI 67
           L +HI
Sbjct: 61 ALQIHI 66

The following BLAST results are available for this feature:

BLAST of CmoCh06G016630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAL9	1.9e-27	100.00	uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766...	[more]
A0A6J1F2V4	1.9e-27	100.00	uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1I7P7	3.3e-19	77.94	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	3.3e-19	77.94	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	1.3e-18	73.53	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of CmoCh06G016630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972134.1	4.0e-27	100.00	uncharacterized protein LOC111470766 [Cucurbita maxima]	[more]
XP_022932695.1	4.0e-27	100.00	uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 unchar...	[more]
XP_038907108.1	1.7e-25	92.65	uncharacterized protein LOC120092931 [Benincasa hispida]	[more]
KAG7018460.1	1.4e-24	89.71	hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582034.1	1.4e-24	89.71	hypothetical protein SDJN03_22036, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh06G016630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	2.5e-19	60.29	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	5.2e-17	56.72	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	6.8e-17	58.21	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	8.4e-15	55.38	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	1.4e-14	54.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 1.9E-29 score: 101.6
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016630.1	CmoCh06G016630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane