CmoCh06G016620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G016620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 11522918 .. 11523462 (-)
RNA-Seq Expression	CmoCh06G016620
Synteny	CmoCh06G016620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCTGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGGTATATATTCTCTGTTTCTTCGTTTGATTCTGCTTGTGTTTCTTACTGCTCTGTCTGCAACTCATCTTCGAAATCTCGAGATCGATTTCATGTTGCGTTTCTGTTTAACGGATTCGGCGAAGCCATATTGTTGTAATTTGTGTTAGTTTGAATGATTTCAGTATTCACAGTCAATTGATTCCTAGTCCATGTGATATATTCCAGATTTTGGATTCACTTCTTAGTATATTAATTGATTAA

mRNA sequence

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCTGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGTATTCACAGTCAATTGATTCCTAGTCCATGTGATATATTCCAGATTTTGGATTCACTTCTTAGTATATTAATTGATTAA

Coding sequence (CDS)

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCTGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGTATTCACAGTCAATTGATTCCTAGTCCATGTGATATATTCCAGATTTTGGATTCACTTCTTAGTATATTAATTGATTAA

Protein sequence

MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNSSIHSQLIPSPCDIFQILDSLLSILID

Homology

[Close]

BLAST of CmoCh06G016620 vs. ExPASy TrEMBL
Match: A0A0A0KYY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012420 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 11  KGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNL 70
           K  N GGLGPSFRGCGS+  +IP PS+ +PRP     VRQLPNQRRLHFHPFPHLL PN 
Sbjct: 19  KEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNF 78

Query: 71  PLHLRPSTSHLPLILPNRNRNRNRIALLRNSSIHS 106
           PLHLR STSHL LI+P  N + + I+   N  +H+
Sbjct: 79  PLHLRHSTSHLHLIIPKSNSDSSSIS---NFQVHT 110

[Close]

BLAST of CmoCh06G016620 vs. NCBI nr
Match: KAG6597658.1 (hypothetical protein SDJN03_10838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFH 60
           MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFH
Sbjct: 1   MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFH 60

Query: 61  PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNS 102
           PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNS
Sbjct: 61  PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNS 101

[Close]

BLAST of CmoCh06G016620 vs. NCBI nr
Match: KAG7029099.1 (hypothetical protein SDJN02_10283, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 9.1e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPWPSVSSPRPPSFHPVRQLPNQRRLHFH 60
           MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIP PSVSSPRPPSFHPVRQLPNQRRLHFH
Sbjct: 1   MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFH 60

Query: 61  PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNSSI 104
           PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNS +
Sbjct: 61  PFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNSRV 103

The following BLAST results are available for this feature:

BLAST of CmoCh06G016620 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY0	1.6e-22	62.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012420 PE=4 SV=1	[more]

BLAST of CmoCh06G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597658.1	3.7e-50	100.00	hypothetical protein SDJN03_10838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029099.1	9.1e-49	97.09	hypothetical protein SDJN02_10283, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh06G016620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016620.1	CmoCh06G016620.1	mRNA