CmoCh06G016460 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTATTAGGCCACTCTCTCCTGGGTTCAGTATCATAGCACAGGTATGTTAGAGAGGTAGCACATGTCTGTTAAGGAGAGGTAGCACATGTCTATTAGGCCACTCGCTCCTGGGTTCAGTATCATAGCACATGTATGTTAGGGAGAGGTTTACACCGTCATTATTTAAATTTTAATGTAAAGTTAAAATAAAAATAGAAAAGGAAGGAGAGAAAAAAGGAAATGGAAGCGTCAGCACACGCTCTGTCCCTTGCCCCAAACTGACACTGAGCTGAACCACTCAGTATCAGTACTCACTAATTCCTTCTTCATTCTCACCCTCTCCCTTCTTCCCGCCGATCGATCAACCGCTTCTGCCGACGACCTTCTTCCCCTTCATTTTCCGGCACCCATGGCCCAAGACCTTCCGGATTCCCCCACCCATCTCTCCATCATGCGCCCTCTGATCTAGGGTTTCCTCCCTTTTCCACTCTTCTCCGTTTCCTGGTAAGCGTCTTCATTCATTCCTTTCTTTTCTCTTTTTTTACACAATGCCTTACTCTCTGCCAACATAAATGCCGCACATTTTCGTAACGCTCTTGTAGAAGTGGGTTTTCGAGTCTAAATCGTCATTGGGTCTCGCTTTACTATGCCCAATTTGGCAGAGTGTTATCTTTTTTTGTCTTTTTTGTGCTTTCATTTCATTTCCCTATATATTTTGGCACAATGTGCGTCTGTTGGTGGGTGGGATACGTTGATGCCTTGAAAGTTTTTGAAATTTTTCTTCATTTCTTGCAATTTTTTATGGGTTATTGACATGGAACAACGACGCTCTTGATATTTGGGGATCTTCTGTGTATAATTCCTTCATATAGTTTGGTGTTTACTTTGATTGAAGCTTGGCTATATACTTCCTGTAGGAGAGTAATGGATTGTCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCCGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGTCTGCGTGAAGATGATAAGGTAGCAGAGCAATCTGTTGTGGATTTACCTATGGATGGAGCAGAACCATACATAGGCATGGAGTTTGGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTCGGATTCACCGTTCGAATACATCATAATCGACGTTCCCGTGTCAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTCCGAGCTAAGAAGTATGTATCCAGAAAAGATAGGATACTTCCAGCCCCACCTATTACACGAGAGGGATGTCAAGCAATGATAAGATTAGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCATAATCATCTCTTGCTGAGTCCTAGTAAAGTTCCATGGCGCGGATCTGGAAAAAACTTGCTCACTGAGGTATGTTTGAGACTTGTTTTGTTCTTTTTTACATAACTAATATGCATTTCTATAGACAATGTCCATACTTGTCATAGTTCATGGTTTTCTATAGACAATATCAGGCTTGCTTTGTCAGATTGCATCAGAATACTTTTCAATCATCAAACTCTAGTGTCGAGTTTTTGGTTTGATAATTTCTGTTCATGTTGAAAGAAGGGATGTTCACTTTTAAGCCCATGTGTAATAGCCCAAGCCTACCTCTAGTAGATATTGTTCGTTTTGACTCGTTACATAGCACCGTCAACCTCATGGTTTTAAAATACGTATACTAGGGAGAGGTTTCCATACCCTTATGAAGGACGATTCGTTCCCTTCTCCAACTGATATGGGATCTCACAATCCACCCCCCTTCGAGGCCCAGCTTCTTTGTTGGCATTCGTTCCCTTCTTCAACTGATGTGAGATCTCACAATCCACCCTCCTTCGGAGTCTAGCATCCTCGCTGGCACACCACCTGATGTCTAGTTTTTATACCATTTGTAACAACCCAAACCCACCGCTAGCAGATATTATTCGCTTTGGCTCCTTATGTATCGTCGTCAGCCTGACGATTTTAAAACGTGTCTTCTTGGGAGAGGTTTCCACTCCCTTATAAAAAATGATGTGTTCCCCTATCTAACCGATATGGGATCACACAATGTATGGTACATTCCTTTTAGTTCTTACTCATTTTCTCCATCATGCTTGATGGGGTACCATGAATTGGATTTTCTTTCTGCAATTTACTTGTTGTCAAGGCTATTACGACTGCACGACGTAGAACGAACAATTACCATTCTAGTTTGTGTTCTTTTCGCCTCAACTGGTGAATTTATGCAATCATCAACTTTTTGGTGGGTGTGCTATAATATAGCCATGGTCGTCCGTGGGCAATTGTATTCGGAAACATCAAGTTTAGTCAAAAGAAATAGATAGATAGCATTCCATCTTCAGTTTAAATGGTTTTCATTTTCTTCATATCTGGAATTCTTATTCGAAACCTATCGAATTTGTTGTGTCTACAACCACATTCTTGATGCACGTAGCTTTGATCATTTTTCGGATACACATGAATTCATTCGAGTTGATAAGTTGGCATCGGCCGTGCGTTCGTTTTGTTTTGCAGGATGAGAAGGATAAGAGGATTCGAGAATTGTCGCTCGAGTTGTACAATGAGAAGCAGAAATGTAAGAGAAAATGTGCAGCATATGAAGAACAATTGAAAGCAGTCTTGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTGAAGAGCATTAGAGAAGTTGAAGATGAAGAACACTCAGGAGGTTTGAATCAAGGTTGGGTTTAGATTGTCACAACTGCACTAACTTATTTTAGATGGGATAATGACTTTGAAGCTTTCATTTTTTTTTGTTCAAGGAGCCAAATGTTAACTCACATATTGTAGATGGATATTGACTTCTTTGAGGAGAATTTCAGTGTATAAAGTATTTATCCTTGTTGGAATGACACTTGGCATTTGAAAA ATGTCTATTAGGCCACTCTCTCCTGGGTTCAGTATCATAGCACAGGGTTTCCTCCCTTTTCCACTCTTCTCCGTTTCCTGGAGAGTAATGGATTGTCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCCGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGTCTGCGTGAAGATGATAAGGTAGCAGAGCAATCTGTTGTGGATTTACCTATGGATGGAGCAGAACCATACATAGGCATGGAGTTTGGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTCGGATTCACCGTTCGAATACATCATAATCGACGTTCCCGTGTCAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTCCGAGCTAAGAAGTATGTATCCAGAAAAGATAGGATACTTCCAGCCCCACCTATTACACGAGAGGGATGTCAAGCAATGATAAGATTAGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCATAATCATCTCTTGCTGAGTCCTAGTAAAGTTCCATGGCGCGGATCTGGAAAAAACTTGCTCACTGAGGATGAGAAGGATAAGAGGATTCGAGAATTGTCGCTCGAGTTGTACAATGAGAAGCAGAAATGTAAGAGAAAATGTGCAGCATATGAAGAACAATTGAAAGCAGTCTTGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTGAAGAGCATTAGAGAAGTTGAAGATGAAGAACACTCAGGAGGTTTGAATCAAGGTTGGGTTTAGATTGTCACAACTGCACTAACTTATTTTAGATGGGATAATGACTTTGAAGCTTTCATTTTTTTTTGTTCAAGGAGCCAAATGTTAACTCACATATTGTAGATGGATATTGACTTCTTTGAGGAGAATTTCAGTGTATAAAGTATTTATCCTTGTTGGAATGACACTTGGCATTTGAAAA ATGTCTATTAGGCCACTCTCTCCTGGGTTCAGTATCATAGCACAGGGTTTCCTCCCTTTTCCACTCTTCTCCGTTTCCTGGAGAGTAATGGATTGTCAATCCAATCACACATTTGATTCAGATGAAAGTGACATTGATATTCAGGCCGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCATAAGGACTTGGACTTTTGTCTGCGTGAAGATGATAAGGTAGCAGAGCAATCTGTTGTGGATTTACCTATGGATGGAGCAGAACCATACATAGGCATGGAGTTTGGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGTGTCGGATTCACCGTTCGAATACATCATAATCGACGTTCCCGTGTCAACAATCAGGTGATTGGTCAGGATTTTGTCTGTTCAAAAGAAGGATTCCGAGCTAAGAAGTATGTATCCAGAAAAGATAGGATACTTCCAGCCCCACCTATTACACGAGAGGGATGTCAAGCAATGATAAGATTAGCTTTAAGGGATGGAGGGAAGTGGGCTGTCACAAAATTTGTTAAAGATCATAATCATCTCTTGCTGAGTCCTAGTAAAGTTCCATGGCGCGGATCTGGAAAAAACTTGCTCACTGAGGATGAGAAGGATAAGAGGATTCGAGAATTGTCGCTCGAGTTGTACAATGAGAAGCAGAAATGTAAGAGAAAATGTGCAGCATATGAAGAACAATTGAAAGCAGTCTTGAAGGAGTTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTGAAGAGCATTAGAGAAGTTGAAGATGAAGAACACTCAGGAGGTTTGAATCAAGGTTGGGTTTAG MSIRPLSPGFSIIAQGFLPFPLFSVSWRVMDCQSNHTFDSDESDIDIQAEIYEKGGSIDDIHKDLDFCLREDDKVAEQSVVDLPMDGAEPYIGMEFGSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVSRKDRILPAPPITREGCQAMIRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLLTEDEKDKRIRELSLELYNEKQKCKRKCAAYEEQLKAVLKELEMHTECISNKVAEVVKSIREVEDEEHSGGLNQGWV Homology
BLAST of CmoCh06G016460 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.9e-25 Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 8.7e-18 Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 3.3e-17 Identity = 44/105 (41.90%), Postives = 59/105 (56.19%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy Swiss-Prot
Match: Q9ZVC9 (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2) HSP 1 Score: 83.6 bits (205), Expect = 4.0e-15 Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy Swiss-Prot
Match: Q9SSQ4 (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 4.5e-14 Identity = 48/140 (34.29%), Postives = 69/140 (49.29%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy TrEMBL
Match: A0A6J1EXT6 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111439184 PE=4 SV=1) HSP 1 Score: 521.9 bits (1343), Expect = 1.6e-144 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy TrEMBL
Match: A0A6J1I3W4 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucurbita maxima OX=3661 GN=LOC111470744 PE=4 SV=1) HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143 Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy TrEMBL
Match: A0A6J1CVL2 (protein FAR1-RELATED SEQUENCE 5-like OS=Momordica charantia OX=3673 GN=LOC111014639 PE=4 SV=1) HSP 1 Score: 496.5 bits (1277), Expect = 7.4e-137 Identity = 238/256 (92.97%), Postives = 250/256 (97.66%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy TrEMBL
Match: A0A5A7TSR9 (Protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003520 PE=4 SV=1) HSP 1 Score: 474.2 bits (1219), Expect = 3.9e-130 Identity = 232/256 (90.62%), Postives = 243/256 (94.92%), Query Frame = 0
BLAST of CmoCh06G016460 vs. ExPASy TrEMBL
Match: A0A1S3BX14 (protein FAR1-RELATED SEQUENCE 5-like OS=Cucumis melo OX=3656 GN=LOC103494535 PE=4 SV=1) HSP 1 Score: 474.2 bits (1219), Expect = 3.9e-130 Identity = 232/256 (90.62%), Postives = 243/256 (94.92%), Query Frame = 0
BLAST of CmoCh06G016460 vs. NCBI nr
Match: KAG6597645.1 (Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 580.9 bits (1496), Expect = 6.1e-162 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
BLAST of CmoCh06G016460 vs. NCBI nr
Match: XP_022932719.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata]) HSP 1 Score: 521.9 bits (1343), Expect = 3.4e-144 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
BLAST of CmoCh06G016460 vs. NCBI nr
Match: XP_023539030.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143 Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0
BLAST of CmoCh06G016460 vs. NCBI nr
Match: XP_022972112.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita maxima]) HSP 1 Score: 518.8 bits (1335), Expect = 2.9e-143 Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 0
BLAST of CmoCh06G016460 vs. NCBI nr
Match: XP_022145121.1 (protein FAR1-RELATED SEQUENCE 5-like [Momordica charantia] >XP_022145122.1 protein FAR1-RELATED SEQUENCE 5-like [Momordica charantia]) HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136 Identity = 238/256 (92.97%), Postives = 250/256 (97.66%), Query Frame = 0
BLAST of CmoCh06G016460 vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 140.2 bits (352), Expect = 2.6e-33 Identity = 86/194 (44.33%), Postives = 117/194 (60.31%), Query Frame = 0
BLAST of CmoCh06G016460 vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 139.4 bits (350), Expect = 4.4e-33 Identity = 83/198 (41.92%), Postives = 118/198 (59.60%), Query Frame = 0
BLAST of CmoCh06G016460 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 128.6 bits (322), Expect = 7.8e-30 Identity = 79/224 (35.27%), Postives = 124/224 (55.36%), Query Frame = 0
BLAST of CmoCh06G016460 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 128.6 bits (322), Expect = 7.8e-30 Identity = 79/224 (35.27%), Postives = 124/224 (55.36%), Query Frame = 0
BLAST of CmoCh06G016460 vs. TAIR 10
Match: AT4G38180.1 (FAR1-related sequence 5 ) HSP 1 Score: 117.9 bits (294), Expect = 1.4e-26 Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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