CmoCh06G016200 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G016200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein CMSS1
LocationCmo_Chr06: 11314443 .. 11316294 (+)
RNA-Seq ExpressionCmoCh06G016200
SyntenyCmoCh06G016200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTTTATAAAAATCAGACGAGGTTTCTGAAGCTTCTCTTCGAAACCCTAGGAAGAAGCCCCCAGCTCAAAGAGAAACCCCGATGTCACCCACAGTCGCGATACTCATAATGCTAGCGATGGTACTGACAACAACGTTCTGGAGGCATTTCCGGTGGAGCTATTGAGCTTTTTTCTCCTTGAGTGTCAGGCTGCTAACGATGTGTGGATTTCTTCGCTCGAGTTAGAATCCGTGAAAGGTACTTCACTAATCTCGATCGCATTTCCTTTGTTTGTGTGTCAGGTATAAGCTTTCTTTGGTTTATCTGCATTATCGCATGATCGTTTAACTAATTATGAGTCATTTACTTTTTACTTAGTTCCTGTTTTGATCTCCATGATCTCATAACTAAATATGAGCAAAGTTCAAGCAATGATCTGGCTTCTTGGTTTCTGAATATATATGAAGTAACGATATTCAGCAATATGTGTTTTTAATTTTCATGGCTCTATTATTTTTTGGTAACTGTTTGTCTTGGCCAATTACTGGTTCATAAGATTGTTCATGTGTTTTTACTTTATCGGGTTTGGGAAATGATGACATTCTACAGAACTTTCAAAGGCAGCTGCTATGCTGAACTTGTTATTTGCACGTCAGTCTGATCCCTTGTTGTAAATGATATGTTTTTCATTTCCAAGCTTTTAACTGTCAAAATCGTTCATGTTTTTGTGATGAGAAATGTGTTGTGAATCCATGCTAGTGTTGTACTTTATCGGGTTTGGGAAATGACGACAAGCTACAGAAAACGTTCAGAGGCAGCTGCTATGCTGAACTTATTATTTGCACGTCAGTCTGATCCCTTGTTAACGTTATAATTCTCATTTCCATGTTTCTAAATGTTAAGACTTGTCGTTGGCTTGTTACTTTTATTGTTTTTTGAACATTCACAATGAAAAAGATATTTATCCTTTCATGTTTTCTTATTTTCTTAGCTCCAAAATCTTTTATGTTTTGGAATGAGAAATGTGTTGTGCATCCAAGCGACTATTTTACTTCATTGAGTTTGGGAAATGATGACAAGCTACAGTATACTTTCAGAGGCATTTGCTATGCTGAACTTGTTATTTGCACGTCAGTCTGATCCCTTGTTGTTAATCTTATATTTCTCGTTTCCAAGCTTCTAAATCTTAAGACTTGTAGCTACTTTGCTCCTCCTACCCGGAAAAGTTACATGCCACTTAAGCCATTTGGTTGACCTTTGCTTGTATGACATATAGGGTTGCTTTCAATTTCTCTCCATCTTGTTTTCACAAAATCTCTCTGCTCTGCCTTGTAAAACCTTCTCCTCAAGTTGAGGCTAGAGACTCGAGCATACGTTGCTCGGCCGTAGGTGCAAATACAAATTCGCTTGACTCGCTTAGTTTTTAATACAAACTCTCCTACTCAATTTTTTCAGTTTTAGTTATTATTATTATTTTTCTAGTTGAAATTTGGGAAATGAAGACAAAATTGAAATGTTCAACCGAGATAGATACTATGCTGAACTATATTGCACGTCAGTCTGATCCCAAATATTGTTCCTTTTATCCAAATTGACGATGGTCATTCTCTTAAATCCTCAAAGATCTTGGCCAAACTCCATTCATCAAACGAAACTACATTTCATGGAATGCCTCCGCTTGCATTGATATCCAAATTCATTTCTTTGAAATTCCTCATTTTGAAGTCTGTTTGATTGTATTTCTCCTTCTCCCTTCCAACAGTTCGTATTAGGTTCTTTGGCTGTACCAATTTTTGGCAGCTTTAGGGATATATATTACCTGCAAACAACCAGAGATTGGGTTTCTTGATCCTACAGCTGCTATATGA

mRNA sequence

ATGGGGGAAGAAGCCCCCAGCTCAAAGAGAAACCCCGATGTCACCCACAGTCGCGATACTCATAATGCTAGCGATGGTACTGACAACAACGTTCTGGAGGCATTTCCGGTGGAGCTATTGAGCTTTTTTCTCCTTGAGTGTCAGGCTGCTAACGATGTGTGGATTTCTTCGCTCGAGTTAGAATCCGTGAAAGCTTTAGGGATATATATTACCTGCAAACAACCAGAGATTGGGTTTCTTGATCCTACAGCTGCTATATGA

Coding sequence (CDS)

ATGGGGGAAGAAGCCCCCAGCTCAAAGAGAAACCCCGATGTCACCCACAGTCGCGATACTCATAATGCTAGCGATGGTACTGACAACAACGTTCTGGAGGCATTTCCGGTGGAGCTATTGAGCTTTTTTCTCCTTGAGTGTCAGGCTGCTAACGATGTGTGGATTTCTTCGCTCGAGTTAGAATCCGTGAAAGCTTTAGGGATATATATTACCTGCAAACAACCAGAGATTGGGTTTCTTGATCCTACAGCTGCTATATGA

Protein sequence

MGEEAPSSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVKALGIYITCKQPEIGFLDPTAAI
Homology
[Close]
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR PDV H+R   NA++G++    E  P+E  SFFL E Q ANDV +SSLELES+K
Sbjct: 30 AKKRKPDVNHNRHAQNATNGSEIIASEPLPLEPFSFFLNEFQTANDVQVSSLELESMK 87

[Close]
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match: A0A6J1GWA7 (protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.1e-06
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR  D T + D  NA++G++++ LEA P+E  SFFL E Q ANDV +SSLEL+S+K
Sbjct: 37 AKKRKSDPTLNTDAQNATNGSESSALEALPLEPFSFFLDEFQTANDVQVSSLELDSMK 94

[Close]
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR PDV H+R   NA++ ++    E  P+E  SFFL E Q ANDV +SSLELES+K
Sbjct: 30 AKKRKPDVNHNRHAQNATNSSEIIASEPLPLEPFSFFLNEFQTANDVQVSSLELESMK 87

[Close]
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR PDV H+R   NA++ ++    E  P+E  SFFL E Q ANDV +SSLELES+K
Sbjct: 30 AKKRKPDVNHNRHAQNATNSSEIIASEPLPLEPFSFFLNEFQTANDVQVSSLELESMK 87

[Close]
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match: A0A6J1IXV6 (protein CMS1 OS=Cucurbita maxima OX=3661 GN=LOC111479452 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.7e-05
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR  D T + D  N  +G++++ LEA P+E  SFFL E Q ANDV +SSLEL+S+K
Sbjct: 37 TKKRKSDPTLNTDAQNPINGSESSALEALPLEPFSFFLDEFQTANDVQVSSLELDSMK 94

[Close]
BLAST of CmoCh06G016200 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          S KR   V ++RD  NA++G++N+  EA P+E  SFFL E Q ANDV ISSLE ES+K
Sbjct: 33 SKKRKSVVNNNRDAQNANNGSENSASEALPLEPFSFFLDEFQTANDVQISSLEFESMK 90

[Close]
BLAST of CmoCh06G016200 vs. NCBI nr
Match: XP_038906095.1 (protein CMSS1 isoform X1 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          S KR   V ++RD  NA++G++N+  EA P+E  SFFL E Q ANDV ISSLE ES+K
Sbjct: 33 SKKRKSVVNNNRDAQNANNGSENSASEALPLEPFSFFLDEFQTANDVQISSLEFESMK 90

[Close]
BLAST of CmoCh06G016200 vs. NCBI nr
Match: XP_038906103.1 (protein CMSS1 isoform X2 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          S KR   V ++RD  NA++G++N+  EA P+E  SFFL E Q ANDV ISSLE ES+K
Sbjct: 33 SKKRKSVVNNNRDAQNANNGSENSASEALPLEPFSFFLDEFQTANDVQISSLEFESMK 90

[Close]
BLAST of CmoCh06G016200 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR PDV H+R   NA++G++    E  P+E  SFFL E Q ANDV +SSLELES+K
Sbjct: 30 AKKRKPDVNHNRHAQNATNGSEIIASEPLPLEPFSFFLNEFQTANDVQVSSLELESMK 87

[Close]
BLAST of CmoCh06G016200 vs. NCBI nr
Match: KAG6582088.1 (Protein CMSS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 7  SSKRNPDVTHSRDTHNASDGTDNNVLEAFPVELLSFFLLECQAANDVWISSLELESVK 65
          + KR  D T + D  NA++G++++ LEA P+E  SFFL E Q ANDV +SSLEL+S+K
Sbjct: 37 AKKRKSDPTLNTDAQNATNGSESSALEALPLEPFSFFLDEFQTANDVQVSSLELDSMK 94

The following BLAST results are available for this feature:
BLAST of CmoCh06G016200 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G016200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TR863.1e-0653.45Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 ... [more]
A0A6J1GWA79.1e-0651.72protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1[more]
A0A5D3CZG61.5e-0551.72Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 ... [more]
A0A1S3BYM01.5e-0551.72protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1[more]
A0A6J1IXV67.7e-0550.00protein CMS1 OS=Cucurbita maxima OX=3661 GN=LOC111479452 PE=4 SV=1[more]
BLAST of CmoCh06G016200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906109.16.4e-0655.17protein CMS1 isoform X3 [Benincasa hispida][more]
XP_038906095.16.4e-0655.17protein CMSS1 isoform X1 [Benincasa hispida][more]
XP_038906103.16.4e-0655.17protein CMSS1 isoform X2 [Benincasa hispida][more]
KAA0044636.16.4e-0653.45protein CMSS1 [Cucumis melo var. makuwa][more]
KAG6582088.11.9e-0551.72Protein CMSS1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh06G016200 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G016200.1CmoCh06G016200.1mRNA