CmoCh06G015880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G015880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	chromatin structure-remodeling complex protein BSH
Location	Cmo_Chr06: 11137553 .. 11141887 (+)
RNA-Seq Expression	CmoCh06G015880
Synteny	CmoCh06G015880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGGCTAAGGGGCCAAGACGAGGGAAGCGCACTGCAGTCGTTCCGAAAGCTACATAACCAAAACGCTCGAAACATACACAACGGGAGAGTCGATCAACCATGAAATCTTCGGCCTCAGCTAACTCAAAATCTCCTTTCAAGTTCAGGATGTGAGTTCTTTTATCTCTTTCTACTTCATCATTGTTCGTTTCATTGATTCCTCTTTCTTATGGCTTTATATTTGGTTTTATGTTCCCAATCATTATCAAAGTCCGACGGCGGAGAATCTAGTGCCAATTCGCTTAGATATCGAAATCGATGGTCAGAGATTCAAAGATGCCTTCACTTGGAACCCTACTGGTAATTTCGTTTATTTATATCGCTCATGCCTGTTAATGTTTCCTTTTCAATCAATGATGTTTGATGTGTAGCGTAGTTTCAGCTCTGACCGTTCGAATTTAGGGTTTTTTTGTCCCTAAATTTATGATTTCTGCTTGGAAGACTGAATTAGTCCCTGTTTTACCGATGATATCGGCGTATTGTTGATTCTTTAATGAAAAACTTGCATACTTCATTTAGTTTTTATATACGAGTTTAATGTCTTCCATGAACTTTTAATTATGTACATAATAAATATGTTAAATCTAAAATATATTGAATAGGTCAAGAATTCAAAGTTCAAAGACTATTAGACACAAAATGGAAGTTTTGGGACATATTTTTAAATTTAGAGATCTATGTTAGACACAAGCTTGAACATTCAAGGGCTTGGCTTGTAATTTTAGCTAAAGTTTATACATGTATATAAAATAGTATTTATGAATAAGATATTTAATGTCCAACCTTAACCTTAGGATTAATAGAGGTAAGAGTTCCATCATTGATATTACTTGTTTTCTCATCATTCCTTTCTCTACAATGAGTTTTATGGTTCTTAAGAAAACATTTAAATTCTTCTGCAAACTCCAAAACGTACCAAAACTTTTGGCAATGTTGTTTAGGGAGGTAAAGGATTTTTTTGGATATGGCCTTATCGTACCATCCTTTCAAGAACGCAAAAGCCCTATTATGGAAAAACCTCATCATGGCTTTCTTTTGGAATTTGTGGAAAGAAAAAAATCAGAGAATATTTGCAGAAAAGACAGACTTACACAAAACTTTTCAACAATGTTGTTTACCAAGCTATATTTTGGTGTAAACGGTCTAATATTTTTACTTCCTATAGTTATACCTCCCTCATTGCAAATGGGGAAGGTCTTTTATAAACATCATGAATTATACATCCCTCTTGTAAGTTTCACTCATCAATGAAATTGTCTCTTGTCGAAAGAAGAAAAAAAAAGTTTTTGAAAACTACATTTTAGTTTTCAAAACTCAGCTAGGTTTTTTAAAACATAGGTAAAAAGTAGGTAACAAAACTAGAAAACCCATAGAGACTTAATTTTGGAAGACTAAAAACCAAAAACCAAATAGTTTTCGAACAGGATCTAAGTTATTTAGGTTTCAACACGGGAGCTTGAACCTAGGAATTCAGTGGTTATCTTGAAACATCCCAAAACAGTAGGCACTCTTTAAGGTTAACTTGAAAATGTGTTTTTTGCTCTTGTGATAGTATCTCCAATTGCATGATTATATCTTATGTGTACTCTAGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAGGATTTAAAGCTTCCCCCAGCATTTATAACACAAATTGCACAATCCATTCAAGTAAGAACAATGGTTATCCGATCCTTCCTCTCCCATTCTTCAGGATTTCAATTGTCAGCCTAAACCATGTTTTCTAGTAATTAAGAGCAATTTTTTTTAACTTACATGAATTTTTGTAATGAAATATTGACATGCCATCAAATTTAATTATGTTTACTCTTGGCTTTTGCTTATTAGTCACAACTTACAGAATTCAGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTACAATCAAGGTTTGTCTAATTGGCATTGCAATACCAATCTCTTGACAACCTCCTCTCTTTATCATTATCTTACAGCTAGATGCAAAATAATGCAATTCTTTTTCTTTTCCAGCTTGATCTTCGAGTAAACAATACGCTCATAAGGGATCAGTTTCTGTGGGTAAAGTTGAACATACTCTTGATACATTTGACTGGAACAAATATTTATTAAGCTTACTTGTGCAAACTGTTATGTCTTTTAGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGAGTAAGCAAAAATCAATTGAATTTGAAAATATACAAAATAAATTTTTTTGTACATGTAAATTGGTTCCTTTGGTGATGAAAAGGCAGCATCTCACTTCGAAGGGATGGATTGTCAATGAGTTATTTTCACCTAAAGTCTCCTGTAATTGTTTTTTTTTTCCCCAACTATTGGATACCATGAGAATTTCATTTATTTTTGTGAGGTAGCCTGCAATTGCTGTTGCGATTCGAGAGCAGCTTTATGAGGTTTGTTTTTTCTTACCTGTTAAGCCTCCCTTTCATAAGGACAATACTTTTTACAGTTCTGTTCACAATCTGAATGCATTATTTCATCACTGCATCTTCATTGTGTCTATGTTCCAGATAGCCATGCAGAACGTTGCTTCAGCAAGAGAAAGCAGACTGAGCAAGAAGGGCCGCCGAGGGTTTGAGCATGTTTCAGCAAGGTATATTCATTCAAACTTGTGCGTTGTTCCTCATTCTCTTTTGTAATTGGGACTTGGAATGAAACTAAATTTTCACCTTTACTCATTTGTCTTTTGCAATTGTGCTTCGTTATCTGTTTGGTGCAACAGTAAAACTGGAGGTGCTTCGGTGGACTTGATGAAGTTATTTGGTCATCGATCAAGTGCTGTTCGGTGAGTATTATTTTATTAATTTTTTTGAGTAATTACTTTATTCCCTGTTACCATTTTCCTAATACATACGTTTTATTCTAATTTTTTAGGTTGTAGTTTGTGTTTATTATTAATGTTCTTTCTTTCTAAAATGCATATCTTAAACTTATCTATTCTCACGTTTTAATATAAAAAATATTCAAAATACAAAGTCACTTGATATGCACTCTTTCGAACAATCTATACAAGTTAATGCACTTGGAGCTTAGATCATTGTTCTTTTGGCTGTCTTGGTTTTTATACCATTTTCACTTGTCAGGGTTGGTGAATTTCGATTGGGAGTGATCTTTTCTTTTTTTTTCTAAATTAAAAATTAACTCATGCTATTAGTGTATTTCTAATATTCGTTGCAGCTAACATGTAAAATTATAAAAATTTGATGCTTATGGTAGTATGCACTAAAATGCAACAGGAAAAGAAAGGACTGGGACATCTACGAACCAATTGTCGATCTTCTATCCAACGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGGGCTGCTCGATAATATATTATCGGTTGCAAGGAGTTGAGAATATCACTCGTATTGTCATCGAACAGTGTCGACTTTTCCAGTGGAGGTAAATTATTCAACTCAGATGAAGTTCGTAGGCAGTTGTTCTTGCTATCTTAACACATACTTAGCATTCTTTAACTTCCAAGTTAAAAGCTTTCGAAGCAATTCTTCATCGACTGTACGTAATCCCTTTCTAGCTCTCAAGTAGGGACATGAACTCTCTGATAAGTTCATATGGTAGATCTTTTGACAAGTTTTACCGTATTGGCATGGACTATATCTCACTAGAGAAGGGTAGACCTTCTGAAATGAGTTTTCATTCTATTTCTTGCCTGTGATTTCATAGTCAAAATCAGAACCATTCAAGAAGTGTTGAATGACTCATTAAGAAGGATTACACTGTTCCATTTAGCTGATAAGTGAAAAGTTCACTGATAGAACCATCTGGGCTTTTCCACAATGCTCCATTTTCCTCTTTGGAAGTTGGGATATGGGTCGTGGCAAGGCTTGGTGATAACATTCCATAGCAGGGTCCAAGAGAAACTCTCTTACTTTTGGATATGGCTGAAAATTTTATTATGAGACTCTCTAGGATGGATTCGGTTTCACCTCCACTTCATGTGTTGCAAACTAGTTCGATAGAGGACTATTTAGAGATTTAGTTCGATAGAGGACTATTTAGAGATTTGGAGGTCAATGTGAGCCCGGTTGAAGTTGAGTATGAGGTTGTCGTTAAGGTCAATTGAGTTTGGCAAACTCTTTTAAGAGTTTATTTGTTTCGAAGTTTATAAGTTTAATCGTTGGAAGTCCAAA

mRNA sequence

AAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGGCTAAGGGGCCAAGACGAGGGAAGCGCACTGCAGTCGTTCCGAAAGCTACATAACCAAAACGCTCGAAACATACACAACGGGAGAGTCGATCAACCATGAAATCTTCGGCCTCAGCTAACTCAAAATCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGCTTAGATATCGAAATCGATGGTCAGAGATTCAAAGATGCCTTCACTTGGAACCCTACTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAGGATTTAAAGCTTCCCCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTCAGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTACAATCAAGCTTGATCTTCGAGTAAACAATACGCTCATAAGGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGACCTGCAATTGCTGTTGCGATTCGAGAGCAGCTTTATGAGATAGCCATGCAGAACGTTGCTTCAGCAAGAGAAAGCAGACTGAGCAAGAAGGGCCGCCGAGGGTTTGAGCATGTTTCAGCAAGTAAAACTGGAGGTGCTTCGGTGGACTTGATGAAGTTATTTGGTCATCGATCAAGTGCTGTTCGGAAAAGAAAGGACTGGGACATCTACGAACCAATTGTCGATCTTCTATCCAACGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGGGCTGCTCGATAATATATTATCGGTTGCAAGGAGTTGAGAATATCACTCGTATTGTCATCGAACAGTGTCGACTTTTCCAGTGGAGGTAAATTATTCAACTCAGATGAAGTTCGTAGGCAGTTGTTCTTGCTATCTTAACACATACTTAGCATTCTTTAACTTCCAAGTTAAAAGCTTTCGAAGCAATTCTTCATCGACTGTACGTAATCCCTTTCTAGCTCTCAAGTAGGGACATGAACTCTCTGATAAGTTCATATGGTAGATCTTTTGACAAGTTTTACCGTATTGGCATGGACTATATCTCACTAGAGAAGGGTAGACCTTCTGAAATGAGTTTTCATTCTATTTCTTGCCTGTGATTTCATAGTCAAAATCAGAACCATTCAAGAAGTGTTGAATGACTCATTAAGAAGGATTACACTGTTCCATTTAGCTGATAAGTGAAAAGTTCACTGATAGAACCATCTGGGCTTTTCCACAATGCTCCATTTTCCTCTTTGGAAGTTGGGATATGGGTCGTGGCAAGGCTTGGTGATAACATTCCATAGCAGGGTCCAAGAGAAACTCTCTTACTTTTGGATATGGCTGAAAATTTTATTATGAGACTCTCTAGGATGGATTCGGTTTCACCTCCACTTCATGTGTTGCAAACTAGTTCGATAGAGGACTATTTAGAGATTTAGTTCGATAGAGGACTATTTAGAGATTTGGAGGTCAATGTGAGCCCGGTTGAAGTTGAGTATGAGGTTGTCGTTAAGGTCAATTGAGTTTGGCAAACTCTTTTAAGAGTTTATTTGTTTCGAAGTTTATAAGTTTAATCGTTGGAAGTCCAAA

Coding sequence (CDS)

ATGAAATCTTCGGCCTCAGCTAACTCAAAATCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGCTTAGATATCGAAATCGATGGTCAGAGATTCAAAGATGCCTTCACTTGGAACCCTACTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAGGATTTAAAGCTTCCCCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTCAGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTACAATCAAGCTTGATCTTCGAGTAAACAATACGCTCATAAGGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGACCTGCAATTGCTGTTGCGATTCGAGAGCAGCTTTATGAGATAGCCATGCAGAACGTTGCTTCAGCAAGAGAAAGCAGACTGAGCAAGAAGGGCCGCCGAGGGTTTGAGCATGTTTCAGCAAGTAAAACTGGAGGTGCTTCGGTGGACTTGATGAAGTTATTTGGTCATCGATCAAGTGCTGTTCGGAAAAGAAAGGACTGGGACATCTACGAACCAATTGTCGATCTTCTATCCAACGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGGGCTGCTCGATAA

Protein sequence

MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRGFEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR

Homology

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BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot
Match: P93045 (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=3702 GN=BSH PE=1 SV=2)

HSP 1 Score: 385.2 bits (988), Expect = 5.5e-106
Identity = 189/240 (78.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MK   S   K P KFR+PTAENLVPIRLDI+ +GQR+KDAFTWNP+DPD+EVV+FAKRTV
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLP AF+TQIAQSIQSQL++FR++EGQDMYTGEKII IKLDLRVN+TLI+DQFLWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NN+ESDPEEF+RT CKDLG+EDPEVGPA+A AIREQLYEIA+Q+VASARESRLSKKGRRG
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
            +H SASK  G S+DLMKLF  +SS VRKRKD D+YEP+VDLL++EEVDALEA+EER AR
Sbjct: 181 SDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR 240

[Close]

BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot
Match: Q6DFM1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis OX=8364 GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-19
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 20  AENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPP-AFITQIAQSIQ 79
           +E LVPIRLD+EIDGQ+ +DAFTWN  +      +FA+    DL L P AF+  IA +I+
Sbjct: 176 SEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIR 235

Query: 80  SQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDL 139
            Q+  + +    +  + +++I IKL++ V N  + DQF WD++  E+ PE+F+   C +L
Sbjct: 236 QQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSEL 295

Query: 140 GIEDPEVGPAIAVAIREQL 158
           G+   E    IA +IR QL
Sbjct: 296 GL-GGEFVTTIAYSIRGQL 312

[Close]

BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot
Match: Q5U379 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio OX=7955 GN=smarcb1a PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-19
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 21  ENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPP-AFITQIAQSIQS 80
           E LVPIRLD+EIDGQ+ +DAFTWN  +      +FA+    DL L P  F+  IA +I+ 
Sbjct: 172 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQ 231

Query: 81  QLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDLG 140
           Q+  + +    D    +++I IKL++ V N  + DQF WD++  E+ PE+F+   C +LG
Sbjct: 232 QIESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 291

Query: 141 IEDPEVGPAIAVAIREQL 158
           +   E    IA +IR QL
Sbjct: 292 L-GGEFVTTIAYSIRGQL 307

[Close]

BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot
Match: Q6GQ82 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis OX=8355 GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-19
Identity = 56/138 (40.58%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 21  ENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPP-AFITQIAQSIQS 80
           E LVPIRLD+EIDGQ+ +DAFTWN  +      +FA+    DL L P AF+  IA +I+ 
Sbjct: 177 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQ 236

Query: 81  QLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDLG 140
           Q+  + +    +  + +++I IKL++ V N  + DQF WD++  E+ PE+F+   C +LG
Sbjct: 237 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 296

Query: 141 IEDPEVGPAIAVAIREQL 158
           +   E    IA +IR QL
Sbjct: 297 L-GGEFVTTIAYSIRGQL 312

[Close]

BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot
Match: O42467 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis OX=47145 GN=smarcb1 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 55/139 (39.57%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 20  AENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTVKDLKLPP-AFITQIAQSIQ 79
           +E LVPIRLD+EI+GQ+ +DAFTWN  +      +FA+    DL L P AF+  I  +I+
Sbjct: 171 SEVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIR 230

Query: 80  SQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDLNNYESDPEEFSRTFCKDL 139
            Q+  + +    +  T +++I IKL++ V N  + DQF WD++  E+ PE+F+   C +L
Sbjct: 231 QQIESYPTDAILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSEL 290

Query: 140 GIEDPEVGPAIAVAIREQL 158
           G +  E    IA +IR QL
Sbjct: 291 G-QGGEFVTTIAYSIRGQL 307

[Close]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL
Match: A0A6J1FBE7 (chromatin structure-remodeling complex protein BSH OS=Cucurbita moschata OX=3662 GN=LOC111442510 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.6e-129
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV
Sbjct: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG
Sbjct: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
           FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR
Sbjct: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240

[Close]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL
Match: A0A6J1I8S2 (chromatin structure-remodeling complex protein BSH OS=Cucurbita maxima OX=3661 GN=LOC111470697 PE=3 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 238/240 (99.17%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV
Sbjct: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIA+QNV SARESRLSKKGRRG
Sbjct: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAVQNVVSARESRLSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
           FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR
Sbjct: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240

[Close]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL
Match: A0A0A0L868 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.6e-122
Identity = 224/240 (93.33%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MK+SAS +SK+PFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNP+DPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKII IKLDLRVNNTLI+DQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NNYESDPEEFSRT CKDLGI+DPEVGPAIAVAIREQLYEIA+QNVASARESR+SKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
           FEHV  SKTGGASVDL+KLFGHRSS VRKRKDWDIYEPIVDLLSNEEVDALEAKEER AR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240

[Close]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL
Match: A0A5A7UEL5 (Chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00140 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 223/240 (92.92%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MK+SAS +SK+PFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNP+DPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKII IKLDLRVNNT+I+DQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NNYESDPEEFSRT CKDLGI+DPEVGPAIAVAIREQLYEIA+QNVASARESR+SKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
           FEHV  SKTGGASVDL+KLFGHRSS VRKRKDWDIYEPIVDLLSNEEVDALEAKEER AR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERIAR 240

[Close]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL
Match: A0A1S3AXP6 (chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483932 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 223/240 (92.92%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MK+SAS +SK+PFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNP+DPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKII IKLDLRVNNT+I+DQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NNYESDPEEFSRT CKDLGI+DPEVGPAIAVAIREQLYEIA+QNVASARESR+SKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
           FEHV  SKTGGASVDL+KLFGHRSS VRKRKDWDIYEPIVDLLSNEEVDALEAKEER AR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERIAR 240

[Close]

BLAST of CmoCh06G015880 vs. TAIR 10
Match: AT3G17590.1 (transcription regulatory protein SNF5, putative (BSH) )

HSP 1 Score: 385.2 bits (988), Expect = 3.9e-107
Identity = 189/240 (78.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKRTV 60
           MK   S   K P KFR+PTAENLVPIRLDI+ +GQR+KDAFTWNP+DPD+EVV+FAKRTV
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLWDL 120
           KDLKLP AF+TQIAQSIQSQL++FR++EGQDMYTGEKII IKLDLRVN+TLI+DQFLWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGRRG 180
           NN+ESDPEEF+RT CKDLG+EDPEVGPA+A AIREQLYEIA+Q+VASARESRLSKKGRRG
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRG 180

Query: 181 FEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERAAR 240
            +H SASK  G S+DLMKLF  +SS VRKRKD D+YEP+VDLL++EEVDALEA+EER AR
Sbjct: 181 SDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR 240

[Close]

BLAST of CmoCh06G015880 vs. TAIR 10
Match: AT3G17590.2 (transcription regulatory protein SNF5, putative (BSH) )

HSP 1 Score: 381.3 bits (978), Expect = 5.6e-106
Identity = 190/242 (78.51%), Postives = 217/242 (89.67%), Query Frame = 0


Query: 1   MKSSASANSKSPFKFRI--PTAENLVPIRLDIEIDGQRFKDAFTWNPTDPDSEVVVFAKR 60
           MK   S   K P KFRI  PTAENLVPIRLDI+ +GQR+KDAFTWNP+DPD+EVV+FAKR
Sbjct: 1   MKGLVSTGWKGPVKFRIYRPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKR 60

Query: 61  TVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIITIKLDLRVNNTLIRDQFLW 120
           TVKDLKLP AF+TQIAQSIQSQL++FR++EGQDMYTGEKII IKLDLRVN+TLI+DQFLW
Sbjct: 61  TVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLW 120

Query: 121 DLNNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAMQNVASARESRLSKKGR 180
           DLNN+ESDPEEF+RT CKDLG+EDPEVGPA+A AIREQLYEIA+Q+VASARESRLSKKGR
Sbjct: 121 DLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGR 180

Query: 181 RGFEHVSASKTGGASVDLMKLFGHRSSAVRKRKDWDIYEPIVDLLSNEEVDALEAKEERA 240
           RG +H SASK  G S+DLMKLF  +SS VRKRKD D+YEP+VDLL++EEVDALEA+EER 
Sbjct: 181 RGSDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERH 240

The following BLAST results are available for this feature:

BLAST of CmoCh06G015880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93045	5.5e-106	78.75	Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=37...	[more]
Q6DFM1	3.0e-19	40.29	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q5U379	3.9e-19	40.58	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q6GQ82	3.9e-19	40.58	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
O42467	1.1e-18	39.57	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CmoCh06G015880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBE7	1.6e-129	100.00	chromatin structure-remodeling complex protein BSH OS=Cucurbita moschata OX=3662...	[more]
A0A6J1I8S2	1.4e-128	99.17	chromatin structure-remodeling complex protein BSH OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0L868	5.6e-122	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=3 SV=1	[more]
A0A5A7UEL5	1.3e-121	92.92	Chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo va...	[more]
A0A1S3AXP6	1.3e-121	92.92	chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo OX...	[more]

BLAST of CmoCh06G015880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17590.1	3.9e-107	78.75	transcription regulatory protein SNF5, putative (BSH)	[more]
AT3G17590.2	5.6e-106	78.51	transcription regulatory protein SNF5, putative (BSH)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006939	SNF5/SMARCB1/INI1	PFAM	PF04855	SNF5	coord: 99..240 e-value: 7.4E-18 score: 65.2 coord: 20..87 e-value: 2.7E-18 score: 66.6
None	No IPR available	PANTHER	PTHR10019:SF5	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1	coord: 5..240
None	No IPR available	PANTHER	PTHR10019	SNF5	coord: 5..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015880.1	CmoCh06G015880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0070603	SWI/SNF superfamily-type complex
molecular_function	GO:0003712	transcription coregulator activity