CmoCh06G015860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G015860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein D-29-like
LocationCmo_Chr06: 11131944 .. 11132947 (+)
RNA-Seq ExpressionCmoCh06G015860
SyntenyCmoCh06G015860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGGTACCTAATTTTCTTCACAGAGATTAAACACAATTTCACAATTAATCGTTCCAATGGCTTCAATACGAGTTCGCCGGCGCCGGATAATTCTCCCGGCGGTGGCGGTGGCAGTGGTGGTGCTGGTTTTTATGGTGAGTTTTGGCCGGAGCGGGAGCGTGGGACACATGCCGTCGACGGAGGAGGAGGGTCGAGATTACCAGGAAATGAAGAGAAAGATGGCGGCGAAAGAAGAAACGGAAAAAGACCGGTCGTCGGAGACTTGGACGGAATGGGCAAAAAAGAAGATCTCCGGTGGACTTGGACTGAGAAATGAACTCCGGGAAGACGGCGTTAACAAAATCGAGAATGTCGTCTCAGGTTCTGGTTTTTCCGGTGCCCAAAGTTTATTAAATTAATAAAAATACCTCTTAATATATTTTTAAAACTTTTAAATTTAAAAAATTAAAATATATATCTCTTAATATATATTTTTTAAAATTAAGTAATACCTGGATGGAATGGTTAATATTAATATCATGTTTCAAGATATAAATTTTATAAATATTTTTTTTATTAATTTAATGTATTGATTTTTATTGAAATTACTTTTTTTCATGATTAAATTATTGGAAAATCTCTTATAAATGAATTAAAAATTGATAAATAAAATTATTCTTAACAACAGAGGCGGGACAATATGGGGCTGAGAAGGGCAGAGAAGCGGAGGACATGGCGGCGGAGAAGGCAGCAGAAACGGCGGAGGAGATGAAGGCGAAGGGGAAGGCGGCGGAGGAGACGACGGAGAAAGGGTTTGTGGCGGGAAAGAAGAAGTCGGAGAGGATAAAAGACGACGTGGTTGGGTCGGAGGACGAGCTGTAATTGAGAAATTTATAATGTAATTTTCTAATTTTTATTTTTAAAATAAATAGTTAAAAATAAAACAAATTTGTTAAATATAAAATTAAAAATTAAGAAAGTTTTTAAAAGTTAATGACACATAAGATAGTATATTAAAGAGATCA

mRNA sequence

CCGGTACCTAATTTTCTTCACAGAGATTAAACACAATTTCACAATTAATCGTTCCAATGGCTTCAATACGAGTTCGCCGGCGCCGGATAATTCTCCCGGCGGTGGCGGTGGCAGTGGTGGTGCTGGTTTTTATGGTGAGTTTTGGCCGGAGCGGGAGCGTGGGACACATGCCGTCGACGGAGGAGGAGGGTCGAGATTACCAGGAAATGAAGAGAAAGATGGCGGCGAAAGAAGAAACGGAAAAAGACCGGTCGTCGGAGACTTGGACGGAATGGGCAAAAAAGAAGATCTCCGGTGGACTTGGACTGAGAAATGAACTCCGGGAAGACGGCGTTAACAAAATCGAGAATGTCGTCTCAGAGGCGGGACAATATGGGGCTGAGAAGGGCAGAGAAGCGGAGGACATGGCGGCGGAGAAGGCAGCAGAAACGGCGGAGGAGATGAAGGCGAAGGGGAAGGCGGCGGAGGAGACGACGGAGAAAGGGTTTGTGGCGGGAAAGAAGAAGTCGGAGAGGATAAAAGACGACGTGGTTGGGTCGGAGGACGAGCTGTAATTGAGAAATTTATAATGTAATTTTCTAATTTTTATTTTTAAAATAAATAGTTAAAAATAAAACAAATTTGTTAAATATAAAATTAAAAATTAAGAAAGTTTTTAAAAGTTAATGACACATAAGATAGTATATTAAAGAGATCA

Coding sequence (CDS)

ATGGCTTCAATACGAGTTCGCCGGCGCCGGATAATTCTCCCGGCGGTGGCGGTGGCAGTGGTGGTGCTGGTTTTTATGGTGAGTTTTGGCCGGAGCGGGAGCGTGGGACACATGCCGTCGACGGAGGAGGAGGGTCGAGATTACCAGGAAATGAAGAGAAAGATGGCGGCGAAAGAAGAAACGGAAAAAGACCGGTCGTCGGAGACTTGGACGGAATGGGCAAAAAAGAAGATCTCCGGTGGACTTGGACTGAGAAATGAACTCCGGGAAGACGGCGTTAACAAAATCGAGAATGTCGTCTCAGAGGCGGGACAATATGGGGCTGAGAAGGGCAGAGAAGCGGAGGACATGGCGGCGGAGAAGGCAGCAGAAACGGCGGAGGAGATGAAGGCGAAGGGGAAGGCGGCGGAGGAGACGACGGAGAAAGGGTTTGTGGCGGGAAAGAAGAAGTCGGAGAGGATAAAAGACGACGTGGTTGGGTCGGAGGACGAGCTGTAA

Protein sequence

MASIRVRRRRIILPAVAVAVVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKEETEKDRSSETWTEWAKKKISGGLGLRNELREDGVNKIENVVSEAGQYGAEKGREAEDMAAEKAAETAEEMKAKGKAAEETTEKGFVAGKKKSERIKDDVVGSEDEL
Homology
BLAST of CmoCh06G015860 vs. ExPASy Swiss-Prot
Match: P13940 (Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-06
Identity = 58/204 (28.43%), Postives = 92/204 (45.10%), Query Frame = 0

Query: 20  VVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMK------------RKMAAKEETE----- 79
           +V LV  V+  R  +V HMPST+E+ RDY ++K            R   AK+E +     
Sbjct: 8   IVFLVLTVASVRCTTVDHMPSTDEDARDYSKLKTKTEEATDEHHSRTQQAKDELKSKADH 67

Query: 80  ------------KDRSS----------ETWTEWAKKKISGGLGLRNELREDG-------- 139
                       KDR+S          E+WTEWAK+KIS GLG + +    G        
Sbjct: 68  AANEVKSNTQQAKDRASEVGKEAKEYTESWTEWAKEKISEGLGFKQDDDPKGSVEKAFDS 127

Query: 140 --------VNKIENVVSEAGQYGAEKGREAEDMAAEKAAETAEEMKAKGKAAE---ETTE 166
                    +K++++ S AG+Y A K ++ +D A +K  +   +  AKGK++E    TTE
Sbjct: 128 VADTATKTKDKLQDMASGAGEYSAGKAKDMKDTAYKKTDDV--KNAAKGKSSEMRQATTE 187

BLAST of CmoCh06G015860 vs. ExPASy TrEMBL
Match: A0A6J1G1V4 (late embryogenesis abundant protein D-29-like OS=Cucurbita moschata OX=3662 GN=LOC111449927 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MASIRVRRRRIILPAVAVAVVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKEE 60
           MASIRVRRRRIILPAVAVAVVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKEE
Sbjct: 1   MASIRVRRRRIILPAVAVAVVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKEE 60

Query: 61  TEKDRSSETWTEWAKKKISGGLGLRNELREDGVNKIENVVSEAGQYGAEKGREAEDMAAE 120
           TEKDRSSETWTEWAKKKISGGLGLRNELREDGVNKIENVVSEAGQYGAEKGREAEDMAAE
Sbjct: 61  TEKDRSSETWTEWAKKKISGGLGLRNELREDGVNKIENVVSEAGQYGAEKGREAEDMAAE 120

Query: 121 KAAETAEEMKAKGKAAEETTEKGFVAGKKKSERIKDDVVGSEDEL 166
           KAAETAEEMKAKGKAAEETTEKGFVAGKKKSERIKDDVVGSEDEL
Sbjct: 121 KAAETAEEMKAKGKAAEETTEKGFVAGKKKSERIKDDVVGSEDEL 165

BLAST of CmoCh06G015860 vs. ExPASy TrEMBL
Match: A0A6J1I8U6 (late embryogenesis abundant protein D-29-like OS=Cucurbita maxima OX=3661 GN=LOC111470719 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 125/203 (61.58%), Postives = 140/203 (68.97%), Query Frame = 0

Query: 1   MASIRVRRRRIILPAVAVAVVVLVFMVSFGRSGSVGHMPSTEEEGRDYQEM--------- 60
           M SIRVRRRRII PAVAVAVVVLVFMVSF RSGSVGHMPSTEEEGRDYQE+         
Sbjct: 1   MVSIRVRRRRIIFPAVAVAVVVLVFMVSFCRSGSVGHMPSTEEEGRDYQEILPERERGTH 60

Query: 61  ------KRKMAAKEETE-----KDRSSET----WTEWAKKKISGGLGLR------NELRE 120
                   ++   EE +     K + S        EWAKKKISGG G++      ++  +
Sbjct: 61  AVDGGGGSRLPGNEEKDGGERRKGKRSGVGDLDGMEWAKKKISGGDGVKKVTDFISDNAK 120

Query: 121 DGVNKIENVVSE--------AGQYGAEKGREAEDMAAEKAAETAEEMKAKGKAAEETTEK 166
              +KIEN  S+        AGQYGAEKGREAEDMAAEKAAE A+EMKAKGKAAEETTEK
Sbjct: 121 KSKDKIENFTSDSGFSGVQKAGQYGAEKGREAEDMAAEKAAEMAKEMKAKGKAAEETTEK 180

BLAST of CmoCh06G015860 vs. ExPASy TrEMBL
Match: A0A5D3BZE2 (Late embryogenesis abundant protein D-29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00170 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 94/180 (52.22%), Postives = 120/180 (66.67%), Query Frame = 0

Query: 2   ASIRVRRRRIILPAVAVAV--VVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKE 61
           +SIRV RRRI LPAVA+AV  V+LVFMV+   SGSVGHMPSTEE+ RDY EMK K+AAK+
Sbjct: 4   SSIRVYRRRISLPAVAMAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAKD 63

Query: 62  E-TEKDRSSETWTEWAKKKISGGLGLRNELRED-----GV---------------NKIEN 121
           +  EKD+++ETWTEWAK+KI+GGLGL+NE  ED     GV               +KI+N
Sbjct: 64  DKKEKDQTAETWTEWAKEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQN 123

Query: 122 VVSEAGQYGAEKGREAEDMAAEKAAETAEEMKAKG----KAAEETTEKGFVAGKKKSERI 155
           V S  GQYG EK  E + MAAEKA E  ++    G    +AAE+  EK + A K+  +++
Sbjct: 124 VASGVGQYGTEKAEEVKGMAAEKAGEAKDKAAKVGTKTTEAAEKAKEKAYNAAKETKDKV 183

BLAST of CmoCh06G015860 vs. ExPASy TrEMBL
Match: A0A5A7UA73 (Late embryogenesis abundant protein D-29 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1589G00180 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 94/180 (52.22%), Postives = 120/180 (66.67%), Query Frame = 0

Query: 2   ASIRVRRRRIILPAVAVAV--VVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKE 61
           +SIRV RRRI LPAVA+AV  V+LVFMV+   SGSVGHMPSTEE+ RDY EMK K+AAK+
Sbjct: 4   SSIRVYRRRISLPAVAMAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAKD 63

Query: 62  E-TEKDRSSETWTEWAKKKISGGLGLRNELRED-----GV---------------NKIEN 121
           +  EKD+++ETWTEWAK+KI+GGLGL+NE  ED     GV               +KI+N
Sbjct: 64  DKKEKDQTAETWTEWAKEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQN 123

Query: 122 VVSEAGQYGAEKGREAEDMAAEKAAETAEEMKAKG----KAAEETTEKGFVAGKKKSERI 155
           V S  GQYG EK  E + MAAEKA E  ++    G    +AAE+  EK + A K+  +++
Sbjct: 124 VASGVGQYGTEKAEEVKGMAAEKAGEAKDKAAKVGTKTTEAAEKAKEKAYNAAKETKDKV 183

BLAST of CmoCh06G015860 vs. ExPASy TrEMBL
Match: E5GC45 (Late embryogenesis abundant protein D-29 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 94/180 (52.22%), Postives = 120/180 (66.67%), Query Frame = 0

Query: 2   ASIRVRRRRIILPAVAVAV--VVLVFMVSFGRSGSVGHMPSTEEEGRDYQEMKRKMAAKE 61
           +SIRV RRRI LPAVA+AV  V+LVFMV+   SGSVGHMPSTEE+ RDY EMK K+AAK+
Sbjct: 4   SSIRVYRRRISLPAVAMAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAKD 63

Query: 62  E-TEKDRSSETWTEWAKKKISGGLGLRNELRED-----GV---------------NKIEN 121
           +  EKD+++ETWTEWAK+KI+GGLGL+NE  ED     GV               +KI+N
Sbjct: 64  DKKEKDQTAETWTEWAKEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQN 123

Query: 122 VVSEAGQYGAEKGREAEDMAAEKAAETAEEMKAKG----KAAEETTEKGFVAGKKKSERI 155
           V S  GQYG EK  E + MAAEKA E  ++    G    +AAE+  EK + A K+  +++
Sbjct: 124 VASGVGQYGTEKAEEVKGMAAEKAGEAKDKAAKVGTKTTEAAEKAKEKAYNAAKETKDKV 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P139404.4e-0628.43Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum OX=3635 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1G1V43.8e-77100.00late embryogenesis abundant protein D-29-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1I8U61.4e-4261.58late embryogenesis abundant protein D-29-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A5D3BZE23.9e-2952.22Late embryogenesis abundant protein D-29 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UA733.9e-2952.22Late embryogenesis abundant protein D-29 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
E5GC453.9e-2952.22Late embryogenesis abundant protein D-29 OS=Cucumis melo subsp. melo OX=412675 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..165
NoneNo IPR availablePANTHERPTHR47372:SF18GROUP 3 LEA PROTEINcoord: 94..149
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 16..87
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 94..149
NoneNo IPR availablePANTHERPTHR47372:SF18GROUP 3 LEA PROTEINcoord: 16..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015860.1CmoCh06G015860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane