CmoCh06G015720 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G015720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr06: 11078750 .. 11080945 (+)
RNA-Seq ExpressionCmoCh06G015720
SyntenyCmoCh06G015720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTGTCTTTTAGCTTCCATTTTTCTCTGGTTACAATAATGTTCTGCTTCGATACCCGAGTTTCGAATAACATGAGATCGGAATATGTTGAACAATTGAATCCTTAAGATCCAGTTGAGTTTACTTGTGTGAATGCAGGGTAATAAGTGCGGCAGCCGAACACGAATTAGAAACGAAGATCGATGATGTGAAAGCTTATACAAGGGTTTACTGACATTCTGTGATGTAGGTGGTTCTTGATTTGGGGCAATAATGGTTTAGATCTTTCTTATAATTGTGAAGTTGATGAGTTTATATGGATTATTACTGTCTCAAGTTCTTTTTCGAATGAAGTTTGTCTCTTGAGAAATGCTTCATAACTTGAGATTTTAGATTTTTGTTTGGAAAGAATACCGAAACTTTATACTCTTTCAAGTTCATATTCAAATATTGTCCAACCGTCAGTCTCAGTTTTAGAACGCGTTTATTAGGGAGAGATTTCCACACCCTAATAATGTTTTGTTCCCCTCATCCACCCCCTTGGGGGCCCAACATCTTCACTAGCACACCGCCCGGTATCGGGCTCTAACACTAGTTACCTTGTCTCAGCTCTAACACTAGTTACCTTGTCTCATTCTTGTATCCATTTGCTTTCACTACTCCATAAATGGAGACTTGTCGTCCTATTGCTTGACTAATTTAATATTCGGGATACGATGGTATCTTGAGATTCTTCTTATATATTGCTCACATATTAATATTTAAATTGTTAATGTCTCCTTTAATTTTAGTTGAAGAAATGTAAGCGTGGGAATCAAATGTTTAAGGAATATTCTCATTCATTTTGTAATATCAAAAAAGTAATTAAATATTTTATGAAGTTTCGAAACAACAAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCATTATTATTTTTATTTTTCGAATTATTATTTTTTCTATCTAATACTCTATAATGGTCCCATAAAACGCAGCACCGCCCGTCGTTTTGTCAGCGAATGGTTTCATGGTAGCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGTATTGATTTTTGCTGCAGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGAAGTGGAATCTATAACTTCAATAGCTTTAATTTCTACTTCGCTTGATATATGATGTTCAGATACTCGGTTTCTGTTTAGTTTTAGTTTAGCTCATTTCCTGTATGTAGTCGAATTTGTAGTTTAGATCCTTCGCGCTGTTAATCGATTTCTGGCGCCTGATAGTGTTGCTTGAAGTAGAATCCATAGCTTCAATAGCTTTGATTTGTACTTTTCTTCAAATATGTTGTTTAGATACTCGGTTTCTGTTTAGCTTTAGCTCATTTCCTATATGTACTTGAATTTGTAGTTAAGATCCTTCCTTAGTGATTCTTCAATTGTACAAGCTGTAAGTTCTAAGTGCTTCTCGCGAAATTGGCTTTTCACAAGCCCCCTGGCTTAAATTATACCAATGTGCATGTGAGTTAAAAGCTACCATTGCTCAGTTCGAGCACTTTTGGTCGATTGCTTGGTAGCTACAATTGAAAAGGAGTTCTTGTATCGTAGTTTTTCTTTCAGCTTCGAGTATAAATCTGGTCCAAGATTTAGGTTTGTGTCTATTATAACTTGAGGAATTGGGACAAAGAAGCTCTGGACAGCATATGAGTTTTGTTTCCGTGCTGTAACCTTCCGTTAGGCCCGTGTCGGTCAAATGCATGTTATTTTCGCTTGTGGAGTCCATTTTCTTACAGAGGTAGTCTAGATTTTGATGATCCATTTTGATTTGTGTCAATTATCATTATGTATCATTTGAAGCTTAATTCAAGTGCTGAGCTTAGCATCCTCTTGTAATTCACAGGGAGTTTCTTAAAATGAAGTGGTAG

mRNA sequence

ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGGAGTTTCTTAAAATGAAGTGGTAG

Coding sequence (CDS)

ATGACTTTCATAAGTCATTCATTTTCCTTGTCACTCCCTTCATTGAAGGGTTCGATGTGTTTCAAATACAGATTTGGTCCTAGCCTCTGCCTCATTACCGACCAACAAACTGCCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGCTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGGAGTTTCTTAAAATGAAGTGGTAG

Protein sequence

MTFISHSFSLSLPSLKGSMCFKYRFGPSLCLITDQQTAGKYQLPITGLVLLLLCSSVFELKRKIHLNGWLTLLLLLLPSDSSRWKLETREFLKMKW
Homology
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BLAST of CmoCh06G015720 vs. ExPASy TrEMBL
Match: A0A0A0L5Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G169480 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.5e-06
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 35 QQTAGKYQLPITGLVLLLLCSSVFELKRKIHLNGWLTLLLLLLP-SDSSRWKLETREFLK 94
          Q TAGK QLPITG++LLL CSS FEL+R+I    WL  +    P S+S  WKLE R FLK
Sbjct: 18 QLTAGKRQLPITGIILLLHCSSAFELRRRIQFE-WLLHIANTYPISESFCWKLEIRMFLK 76

The following BLAST results are available for this feature:
BLAST of CmoCh06G015720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G015720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5Y74.5e-0658.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G169480 PE=4 SV=1[more]
BLAST of CmoCh06G015720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015720.1CmoCh06G015720.1mRNA