CmoCh06G015260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G015260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	acyl-CoA dehydrogenase-related
Location	Cmo_Chr06: 10831849 .. 10832847 (-)
RNA-Seq Expression	CmoCh06G015260
Synteny	CmoCh06G015260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTGTCGATGGGGATCGAGATGAAAAGATGAGATGCGACGTTGCATTGAGAGACCTTGGCTCGAGTAGAGGCAAGGTCGAGCCGAATGACTTGGCCTAGTGTAGAGGCAAGTCGGATGTGTTGCAGACAATTGAACATGCACGTGCAGGCGGCGTGTGTGGTTGAACAAGTTTGGATTCCACATAAGCGATATTCGATTGGCGAAGACAAACTTCGCCCAAGGTCCGACGAAGCCACAAAGCCGGAGTGAAAAATATATATGGGGCTTGATTCCCCTTAAGGCTAGTCGTGAGCGTGTCAATATCACGATGCCACACGGTAAAAAATGTAGGACCGTGACCCTGAGCAGAGTTCCTTCCTTTCAAACAATGCCAGTATTTGGATATAGTAGTCACATGATTTCCCCCCACCCCCTTATAACAATTTTTAAGAGAATGACTATGTTTGTGTCAGTGTCGTGTGAAACTTGAGGGAACGAGATTGCTAGTCTTGGAAGCAGCTGATCAGTTAGATCGGCTAGGAAACAAGAAAGCACGAGGGACGATTGCAATGACCAAGGTAAATTTTCTTACATCTAATCGAAGTTATTTAAGTTCATGACCTTTCATAAATGCTTTAAACCTATCTTTGGAGTAGAAGAATCGAACAAAAAGCCAACCTATCTAATTGTCGTTCTTTCGGACTTATCTTCATTTTTTTTTGTTAACCATTTAACAGATTTCTACCCTTCTCCTCTCTCATTTTTTCCTTTTTTTTTTTACCACGTCTTCATTAATATCTTGGTGAAACATGGCACAGGTTGCAGCAACCAATATGGCATTGCAAATTCTGGACATGGCAATGCAAGTTCATGGTGCAGGTGGCTTATCTTCTGGCACTGTTCATGCTCATCTCTGGGCTGCTGCAAGAACCTTCAGAATACCAGATGGCCCTGATGAAGTTCATTTAGGAACCATCGCCAAGAGCTTCGGAGGGCTAAGCTTTGAAAATTGA

mRNA sequence

ATGGACCCTGTCGATGGGGATCGAGATGAAAAGATGAGATGCGACGTTGCATTGAGAGACCTTGGCTCGAGTAGAGGCAAGTGTCGTGTGAAACTTGAGGGAACGAGATTGCTAGTCTTGGAAGCAGCTGATCAGTTAGATCGGCTAGGAAACAAGAAAGCACGAGGGACGATTGCAATGACCAAGGTTGCAGCAACCAATATGGCATTGCAAATTCTGGACATGGCAATGCAAGTTCATGGTGCAGGTGGCTTATCTTCTGGCACTGTTCATGCTCATCTCTGGGCTGCTGCAAGAACCTTCAGAATACCAGATGGCCCTGATGAAGTTCATTTAGGAACCATCGCCAAGAGCTTCGGAGGGCTAAGCTTTGAAAATTGA

Coding sequence (CDS)

ATGGACCCTGTCGATGGGGATCGAGATGAAAAGATGAGATGCGACGTTGCATTGAGAGACCTTGGCTCGAGTAGAGGCAAGTGTCGTGTGAAACTTGAGGGAACGAGATTGCTAGTCTTGGAAGCAGCTGATCAGTTAGATCGGCTAGGAAACAAGAAAGCACGAGGGACGATTGCAATGACCAAGGTTGCAGCAACCAATATGGCATTGCAAATTCTGGACATGGCAATGCAAGTTCATGGTGCAGGTGGCTTATCTTCTGGCACTGTTCATGCTCATCTCTGGGCTGCTGCAAGAACCTTCAGAATACCAGATGGCCCTGATGAAGTTCATTTAGGAACCATCGCCAAGAGCTTCGGAGGGCTAAGCTTTGAAAATTGA

Protein sequence

MDPVDGDRDEKMRCDVALRDLGSSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAKSFGGLSFEN

Homology

[Close]

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot
Match: Q8RWZ3 (Probable acyl-CoA dehydrogenase IBR3 OS=Arabidopsis thaliana OX=3702 GN=IBR3 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.4e-33
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 23  SSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGA 82
           S   K RV+LEGTRLLVLEAAD LD+ GNKKARG +AM KVAA NMAL++LD A+QVHGA
Sbjct: 721 SDLAKLRVELEGTRLLVLEAADHLDKFGNKKARGILAMAKVAAPNMALKVLDTAIQVHGA 780

Query: 83  GGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
            G+SS TV AHLWA ART RI DGPDEVHLGTI K
Sbjct: 781 AGVSSDTVLAHLWATARTLRIADGPDEVHLGTIGK 815

[Close]

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot
Match: Q5ZHT1 (Acyl-CoA dehydrogenase family member 11 OS=Gallus gallus OX=9031 GN=ACAD11 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 27  KCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLS 86
           +CR+ +E  RLL L+ A ++D LGN+KAR  +AMTKV      L+++D A+QV G  G+S
Sbjct: 673 ECRLSIEQARLLTLKTASKIDTLGNRKARKEVAMTKVVVPRAVLKVIDCAIQVCGGAGVS 732

Query: 87  SGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
                A ++A  RT R+ DGPDEVHL TIA+
Sbjct: 733 QDFPLASMFAYIRTLRVADGPDEVHLSTIAR 763

[Close]

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot
Match: Q80XL6 (Acyl-CoA dehydrogenase family member 11 OS=Mus musculus OX=10090 GN=Acad11 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 27  KCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLS 86
           K R+ +E  RLL L+AA  +D LG+  AR  IAM KVAA     +I D A+QVHG  G+S
Sbjct: 675 KSRIAIEEIRLLTLKAAHSIDTLGSASARKEIAMIKVAAPKAVCKIADWAIQVHGGAGVS 734

Query: 87  SGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
                A+++A  RT R+ DGPDEVHL  IAK
Sbjct: 735 QDYPLANMYAIIRTLRLADGPDEVHLSAIAK 765

[Close]

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot
Match: B3DMA2 (Acyl-CoA dehydrogenase family member 11 OS=Rattus norvegicus OX=10116 GN=Acad11 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-16
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 27  KCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLS 86
           K R+ +E  RLL L+AA  +D LG+  AR  IAM KVAA     +I D A+QVHG  G+S
Sbjct: 675 KSRIAIEEIRLLTLKAAHSIDTLGSAAARKEIAMIKVAAPKAVCKIADRAIQVHGGAGVS 734

Query: 87  SGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
                A+++A  RT R+ DGPDEVHL  IAK
Sbjct: 735 QDYPLANMYAIIRTLRLADGPDEVHLSAIAK 765

[Close]

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot
Match: Q6JQN1 (Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens OX=9606 GN=ACAD10 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-15
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 29   RVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLSSG 88
            RV++E  RLLVL AA  +D  GNK A   IAM K+ A +MA +++D A+Q  GA GLSS 
Sbjct: 964  RVEIEQARLLVLRAAHLMDLAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSSD 1023

Query: 89   TVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
               A  +  AR  R  DGPDEVH  T+AK
Sbjct: 1024 YPLAQFFTWARALRFADGPDEVHRATVAK 1052

[Close]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL
Match: A0A0A0L5U9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164520 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 83/95 (87.37%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 23  SSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGA 82
           S   KCRV+LE TRLLVLEAADQLDRLGNKKARGTIAM KVAA  MALQILDMAMQVHGA
Sbjct: 728 SDIAKCRVELEKTRLLVLEAADQLDRLGNKKARGTIAMAKVAAPAMALQILDMAMQVHGA 787

Query: 83  GGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
           GGLSS TV AHLWAAART RI DGPDEVHLGTIAK
Sbjct: 788 GGLSSDTVLAHLWAAARTLRIADGPDEVHLGTIAK 822

[Close]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL
Match: A0A6J1C8N7 (probable acyl-CoA dehydrogenase IBR3 OS=Momordica charantia OX=3673 GN=LOC111009226 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 23  SSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGA 82
           S   KCRV+LE TRLLVLEAADQLDRLGNKKARGTIAM KVAA NMALQ+LDMAMQVHGA
Sbjct: 728 SDIAKCRVELEKTRLLVLEAADQLDRLGNKKARGTIAMAKVAAPNMALQVLDMAMQVHGA 787

Query: 83  GGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
           GGLSS TV +HLWA ART RI DGPDEVHLGTIAK
Sbjct: 788 GGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAK 822

[Close]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL
Match: A0A6J1IX24 (probable acyl-CoA dehydrogenase IBR3 OS=Cucurbita maxima OX=3661 GN=LOC111479342 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 81/91 (89.01%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 27  KCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLS 86
           KCRV+LE TRLLVLEAADQLDRLGNKKARGTIAM KVAA NMALQILDMAMQVHGAGGLS
Sbjct: 735 KCRVELERTRLLVLEAADQLDRLGNKKARGTIAMAKVAAPNMALQILDMAMQVHGAGGLS 794

Query: 87  SGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
           S TV AHLWA  RT RI DGPDEVHLGTIAK
Sbjct: 795 SDTVLAHLWATTRTLRIADGPDEVHLGTIAK 825

[Close]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL
Match: A0A6J1GUW2 (probable acyl-CoA dehydrogenase IBR3 OS=Cucurbita moschata OX=3662 GN=LOC111457691 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 81/91 (89.01%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 27  KCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGAGGLS 86
           KCRV+LE TRLLVLEAADQLDRLGNKKARGTIAM KVAA NMALQILDMAMQVHGAGGLS
Sbjct: 735 KCRVELEKTRLLVLEAADQLDRLGNKKARGTIAMAKVAAPNMALQILDMAMQVHGAGGLS 794

Query: 87  SGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
           S TV AHLWA  RT RI DGPDEVHLGTIAK
Sbjct: 795 SDTVLAHLWATTRTLRIADGPDEVHLGTIAK 825

[Close]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL
Match: A0A5D3CXJ9 (Putative acyl-CoA dehydrogenase IBR3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001230 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.0e-35
Identity = 81/95 (85.26%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 23  SSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGA 82
           S   KCRV+LE TRLLVLEAADQLDRLGNKKARGTIAM KVAA  MALQILDMAMQVHGA
Sbjct: 728 SDIAKCRVELEKTRLLVLEAADQLDRLGNKKARGTIAMAKVAAPTMALQILDMAMQVHGA 787

Query: 83  GGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
           GGLSS TV +HLWA ART RI DGPDEVHLGTIAK
Sbjct: 788 GGLSSDTVLSHLWAVARTLRIADGPDEVHLGTIAK 822

[Close]

BLAST of CmoCh06G015260 vs. TAIR 10
Match: AT3G06810.1 (acyl-CoA dehydrogenase-related )

HSP 1 Score: 141.0 bits (354), Expect = 6.7e-34
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 23  SSRGKCRVKLEGTRLLVLEAADQLDRLGNKKARGTIAMTKVAATNMALQILDMAMQVHGA 82
           S   K RV+LEGTRLLVLEAAD LD+ GNKKARG +AM KVAA NMAL++LD A+QVHGA
Sbjct: 721 SDLAKLRVELEGTRLLVLEAADHLDKFGNKKARGILAMAKVAAPNMALKVLDTAIQVHGA 780

Query: 83  GGLSSGTVHAHLWAAARTFRIPDGPDEVHLGTIAK 118
            G+SS TV AHLWA ART RI DGPDEVHLGTI K
Sbjct: 781 AGVSSDTVLAHLWATARTLRIADGPDEVHLGTIGK 815

The following BLAST results are available for this feature:

BLAST of CmoCh06G015260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWZ3	9.4e-33	74.74	Probable acyl-CoA dehydrogenase IBR3 OS=Arabidopsis thaliana OX=3702 GN=IBR3 PE=...	[more]
Q5ZHT1	1.1e-17	48.35	Acyl-CoA dehydrogenase family member 11 OS=Gallus gallus OX=9031 GN=ACAD11 PE=2 ...	[more]
Q80XL6	1.2e-16	50.55	Acyl-CoA dehydrogenase family member 11 OS=Mus musculus OX=10090 GN=Acad11 PE=1 ...	[more]
B3DMA2	1.6e-16	50.55	Acyl-CoA dehydrogenase family member 11 OS=Rattus norvegicus OX=10116 GN=Acad11 ...	[more]
Q6JQN1	5.2e-15	50.56	Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens OX=9606 GN=ACAD10 PE=1 S...	[more]

BLAST of CmoCh06G015260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5U9	2.1e-35	87.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164520 PE=3 SV=1	[more]
A0A6J1C8N7	2.1e-35	85.26	probable acyl-CoA dehydrogenase IBR3 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1IX24	2.7e-35	89.01	probable acyl-CoA dehydrogenase IBR3 OS=Cucurbita maxima OX=3661 GN=LOC111479342...	[more]
A0A6J1GUW2	2.7e-35	89.01	probable acyl-CoA dehydrogenase IBR3 OS=Cucurbita moschata OX=3662 GN=LOC1114576...	[more]
A0A5D3CXJ9	8.0e-35	85.26	Putative acyl-CoA dehydrogenase IBR3 isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CmoCh06G015260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06810.1	6.7e-34	74.74	acyl-CoA dehydrogenase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009075	Acyl-CoA dehydrogenase/oxidase C-terminal	PFAM	PF00441	Acyl-CoA_dh_1	coord: 26..118 e-value: 2.5E-20 score: 73.2
None	No IPR available	GENE3D	1.20.140.10		coord: 22..120 e-value: 2.0E-22 score: 81.7
None	No IPR available	PANTHER	PTHR48083:SF24	ACYL-COA DEHYDROGENASE IBR3-RELATED	coord: 24..117
None	No IPR available	PANTHER	PTHR48083	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	coord: 24..117
IPR036250	Acyl-CoA dehydrogenase-like, C-terminal	SUPERFAMILY	47203	Acyl-CoA dehydrogenase C-terminal domain-like	coord: 27..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015260.1	CmoCh06G015260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors