CmoCh06G014900 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G014900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCAP-Gly domain-containing linker protein 1-like
LocationCmo_Chr06: 10718783 .. 10720865 (+)
RNA-Seq ExpressionCmoCh06G014900
SyntenyCmoCh06G014900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTAAAAATTCAAATCTTGGACAAAACTCGTCCCCATCTCTCCTCTCATTGTTCTTCTTTCTCCCCCTCAATTCCCTCAAATTTTGAATTTTGATCTCCATTTCACCCTCACCCACCCTTTTTAAAACCCTAATTTTTCAACTCATCAGATTCTGAATCTCCATTTCAGGCCGATTCGATCCCTGCTTCAATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCGTGAGTTCCCTTCATTCCTTCGTTTTCAGTTTCTCATTCATTCTGGCTTTCGGGCTTTATCAACTTTGTTGTTTTTGTTTCTTTCTTGTTCACAGAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGTATTGTTTTCTACAATGTGTTTATAATTCTTGAATTTAACTCCAATCTTAACAGATTTTGACTTGTCTCTTCTCAGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGTGGAGTCTAAGATATAAAATGTCCTAGCTGTGAGATAAAGTTGGATGTTCTTGGTCATTTACTTGTTTTTGTGCTCTGATTTTGTGAACTTTCCTTGTGTTTGAGCATTTCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGTAAGTTAATAATGTATTGCTTGTTTTCTTCATTCTTTTCTTTGTATTCATATCTTTCTTAAAAGTAGGCTTATCTCTGTCAGAATGCCTTGTTCTAAGATATCTGTGTTTTAGTTTTCTTTGATGGGTCTATATGATCCATAAACAAGTTGGTCATCCAAATGGAGTGTTTGAAGATTGGATCCTGTGGCTTATACTGTGAGATCCACCTTAGTTAGGAGGAGAACGAATCATTCTTTATAAGGGTGTGGAAACCACTCCCTAGAAGAGACGTTTTAAAAACCTTGAGGAGAAGCCCAAAAGGAAAACCCAAAGATGACAAATATCTACTAGCGGTGGGCTTGGGCCGTTACAAATGGTATTAGAGCCAGATAACGGGCGATGTGCCAATAAGGACATTGGGCTCTAAAGGGGGTGGATTGGGAGGTCTTACAAATCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGATAGCGGTGAGCTTGGACTGTTACAATATCAGTTAACTGATTCTTGGTAGTTCGAAAAGGGTTTCGAGTCTGCTAATGTTTCCAGCAGAGGATACTTGATCCCTCAATACCTTGGTTTAGAAGGGAAAAAAAAGAACATATGATATTAATGACCCTTTTGTTGGTCACGCATATTCCTGTTCTTTTCTGCTTTTGTATCTGTTTCTCCAGCATCACTTGACATAGGCATTCAATTCTCATACAGGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGTAAGCCAAATGCTTCACTCAGATTGAATGTGCTAAGGGTAATAAATTTGTGGCATGAAAGCAGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTAAGTTCTAATTCTAATGACTTTCATACTCAACAAAATACCTCCAACCCGCCTCGTCCCACCGTATGTTTTCAACAGCCATTGAAGAAAATTTATGAATCCTGGCAGGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAAGAGAATTTCCATTGTGTTCGTAATGTGGCGATGGATTTCCACGTTTGACTGTTTTTCAAAGCTTTGTAATGGGATTGATAAGATTTTCCCGGCATTTAAGGAAGCATTGAATTTGTAAGTGTAATTTTTTACACGCACATCAACATTAATAAGTTCATTCTTCAAGGATATATGTATTTAATTTTTGGGAAGCAGGGCTGGTGGTATCGATTTTTTTCTCAACTAGCAAATTG

mRNA sequence

GGTTAAAAATTCAAATCTTGGACAAAACTCGTCCCCATCTCTCCTCTCATTGTTCTTCTTTCTCCCCCTCAATTCCCTCAAATTTTGAATTTTGATCTCCATTTCACCCTCACCCACCCTTTTTAAAACCCTAATTTTTCAACTCATCAGATTCTGAATCTCCATTTCAGGCCGATTCGATCCCTGCTTCAATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAAGAGAATTTCCATTGTGTTCGTAATGTGGCGATGGATTTCCACGTTTGACTGTTTTTCAAAGCTTTGTAATGGGATTGATAAGATTTTCCCGGCATTTAAGGAAGCATTGAATTTGTAAGTGTAATTTTTTACACGCACATCAACATTAATAAGTTCATTCTTCAAGGATATATGTATTTAATTTTTGGGAAGCAGGGCTGGTGGTATCGATTTTTTTCTCAACTAGCAAATTG

Coding sequence (CDS)

ATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAA

Protein sequence

MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNKTRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN
Homology
BLAST of CmoCh06G014900 vs. ExPASy TrEMBL
Match: A0A6J1G8M8 (CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451732 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60
           MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD
Sbjct: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120
           TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120

Query: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 158
           TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN
Sbjct: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 157

BLAST of CmoCh06G014900 vs. ExPASy TrEMBL
Match: A0A6J1IDF2 (uncharacterized protein LOC111472345 OS=Cucurbita maxima OX=3661 GN=LOC111474206 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.6e-71
Identity = 150/157 (95.54%), Postives = 154/157 (98.09%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60
           MANADSSTPSTPAP P SAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD
Sbjct: 1   MANADSSTPSTPAPAPMSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120
           TQV+TYRSELSELKKSLN+EVEQLRTEF+ELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK
Sbjct: 61  TQVHTYRSELSELKKSLNLEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120

Query: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 158
           TRHQHPVAESSDKEDEDEGKKDGLHGLTE KGNEAE+
Sbjct: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTECKGNEAEH 157

BLAST of CmoCh06G014900 vs. ExPASy TrEMBL
Match: A0A6J1C8F7 (uncharacterized protein LOC111009183 OS=Momordica charantia OX=3673 GN=LOC111009183 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 126/158 (79.75%), Postives = 134/158 (84.81%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60
           MA+ADS TPS PAP P SA+KENLTPIG KI ELNESRAEL  RIQFLKQDLQNWR KLD
Sbjct: 1   MADADSPTPSVPAPSPLSARKENLTPIGAKITELNESRAELHSRIQFLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120
            QVNTYRSELSELKKSLNVEVE LRTEF ELRTTLQQQQEDVT SLRNLG+QD S DN++
Sbjct: 61  MQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNLGLQDVSMDNDE 120

Query: 121 TRHQHPVAESSDKEDEDEGK-KDGLHGLTEGKGNEAEN 158
           T+ QHP+AESSDKE  D  + KDG H LTE KGNEAEN
Sbjct: 121 TQRQHPIAESSDKEAHDANEVKDG-HALTEDKGNEAEN 157

BLAST of CmoCh06G014900 vs. ExPASy TrEMBL
Match: A0A6J1IY17 (CAP-Gly domain-containing linker protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111479493 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 127/157 (80.89%), Postives = 135/157 (85.99%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60
           MA+ADSS+PS PAP P SAK ENLTPIG KI ELNESRAELL+RIQ LKQDLQNWR KLD
Sbjct: 1   MADADSSSPSVPAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120
           TQVNTYRSELSELKKSLNVEVE LRTEF+ELRTTLQQQQEDVTTSLRNLG+QD S DNN+
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 158
           TRHQHP AE S+KED  E  K+G  G TE KGNEA N
Sbjct: 121 TRHQHP-AEISEKEDAGEATKEGC-GSTEEKGNEAGN 155

BLAST of CmoCh06G014900 vs. ExPASy TrEMBL
Match: A0A5D3D134 (CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00970 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.6e-51
Identity = 127/157 (80.89%), Postives = 135/157 (85.99%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60
           MA++DSSTPS   P P SAKKENLTPIG KI ELNESR+ELL+RIQ LKQDLQNWR KLD
Sbjct: 1   MADSDSSTPS---PAPLSAKKENLTPIGSKITELNESRSELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120
           TQVNTYRSELSELKKSLNVEVE LRTEF+ELRTTLQQQQEDVTTSLRNLG+QD S D N+
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDTNE 120

Query: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 158
           T+HQHP A S DKED DE KKD   GLTE KGNEAEN
Sbjct: 121 TQHQHP-AGSRDKEDADEAKKD---GLTEEKGNEAEN 150

BLAST of CmoCh06G014900 vs. TAIR 10
Match: AT4G15790.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). )

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-29
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 0

Query: 4   ADSSTPSTPAPV--PTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLDT 63
           +DS++P  P  V  PT+ KK+N  P+  K+ ELNESRAELL+RIQ LKQDLQ+WR KLDT
Sbjct: 6   SDSTSPVAPLSVSSPTATKKDNTNPVDSKLTELNESRAELLNRIQNLKQDLQSWRGKLDT 65

Query: 64  QVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNKT 123
           QV  YR ELS LKK+LN+EVEQLR EF++L+TTL QQQ+DV+ SL++LG+QD  +  +K 
Sbjct: 66  QVKVYREELSGLKKTLNLEVEQLREEFKDLKTTLNQQQDDVSASLKSLGLQDSKEQIDK- 125

Query: 124 RHQHPVAESSDKEDEDEGKKDGLH 146
                  E  +    D+  K+  H
Sbjct: 126 -RSEVTEEKVEALSTDDNAKEAEH 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G8M85.8e-75100.00CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IDF28.6e-7195.54uncharacterized protein LOC111472345 OS=Cucurbita maxima OX=3661 GN=LOC111474206... [more]
A0A6J1C8F71.4e-5279.75uncharacterized protein LOC111009183 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1IY171.8e-5280.89CAP-Gly domain-containing linker protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A5D3D1342.6e-5180.89CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
AT4G15790.12.8e-2953.47unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..58
NoneNo IPR availableCOILSCoilCoilcoord: 67..101
NoneNo IPR availableGENE3D1.20.58.130coord: 32..100
e-value: 2.4E-5
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..157
NoneNo IPR availablePANTHERPTHR34681:SF2UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRINcoord: 1..140
NoneNo IPR availablePANTHERPTHR34681UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRINcoord: 1..140
NoneNo IPR availableSUPERFAMILY75704Mitotic arrest deficient-like 1, Mad1coord: 20..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014900.1CmoCh06G014900.1mRNA