CmoCh06G014310 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G014310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr06: 10382539 .. 10384139 (-)
RNA-Seq ExpressionCmoCh06G014310
SyntenyCmoCh06G014310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGACAATACAGGTAATTTATTGCCTTTTAGAATACATATCAAAGATACATGAGGTTATATTCACATACTCATAAGCAATGAGCTTTGCTTTGACGACCTAAGTCCACCGTTAGTAGATATTGTACTATTTGGATTTTTTCTTTTGAGCTACCCTTCAAGATTTTTAAAAAGTGTCTACTAGGGAGAGTTTTTCACACCTTTATAAAGAATGTTTCGTTCTTCTTCCGACCCCACGTAGCACAAACCCAAGTGGGCTGAAGATCTAAACCAAATTTAGATGGTGGTTTGTGTTCGGAGAAGATTTTTGCCGGCAACCGATCCTCATCTTTTCCCCAACTGGATAACACAATGCAATGATTCTTGTGGGGTCTCTTAAAGTTTTAGACAGATTGGCCAGCTGTGGCTAATGACCCACCATCTCACATGCTCAGCCAATGTGGTTTTGACTCACCCATCACTCCCTTTTCCCCCTTCTAAACTCTATATATCTTCTCTCTCTCGCTTGCTCAGCCAAGTGTGTGCGTGTATAACACTATAAGTTCTGTATTTAGTTCTTTTGTAGCTCCGAGTATAGACAACATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTGTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCTCATGTTTCTCTTCAGGTACTTCCTTTTTCCAAATTTCATTCATTTGGGTATGCTTTTTTAGTCTCTCTGTTTGTGGCTGTGAATTCAAACAAGCTCGATCAATCTGCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGTTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAACAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTCAAGGATTCGAGGAATTTGAGGAAAAGGGTATCAGAATTTAGATTAAAAAAATAATTCTTTCACCAAGTATTTAAGTATGGTGATGCCTGTACATGGAAGAAGCTATAGTATTAGCTCTATTAATTACTGGGTTTTCATTGGTTTATGTGTTCCATTGGAAGGTTAATTAATTAACCTAAGGTTTGTGAACCTCCTCCCTCCTTGTGTTCTTCTTCATGAGAGAAAGAGTTCGTTTGTTAGGATCGTCAATCCGAACATAACTCAAAGTACGAAATACTCGAATCTCGACTGCAAAAGCTGAGATGAGTCTGAATTTGTGTTGTAATATGCTCTTAACTGGCAGCCATGCAGTGGCACATGAGCCGTCATGTTTGGATAGCTGGATCTCTGTTGCAAGGAAAGCTAAAGTTTTCTAAAAACATATTCACAGAGAGACAGAGGAGAGAGAAGGATTCGGAGGCTTTAACTTGATGTTTGACTAGATCTCGTATTTTAACTGGTTGAATCAAGTTCTGATTAAATTATAGGATTATTAATTGGTCGTATTAAG

mRNA sequence

ATGTACGACAATACAGCTCCGAGTATAGACAACATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTGTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCTCATGTTTCTCTTCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGTTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAACAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTCAAGGATTCGAGGAATTTGAGGAAAAGGGTATCAGAATTTAGATTAAAAAAATAATTCTTTCACCAAGTATTTAAGTATGGTGATGCCTGTACATGGAAGAAGCTATAGTATTAGCTCTATTAATTACTGGGTTTTCATTGGTTTATGTGTTCCATTGGAAGGTTAATTAATTAACCTAAGGTTTGTGAACCTCCTCCCTCCTTGTGTTCTTCTTCATGAGAGAAAGAGTTCGTTTGTTAGGATCGTCAATCCGAACATAACTCAAAGTACGAAATACTCGAATCTCGACTGCAAAAGCTGAGATGAGTCTGAATTTGTGTTGTAATATGCTCTTAACTGGCAGCCATGCAGTGGCACATGAGCCGTCATGTTTGGATAGCTGGATCTCTGTTGCAAGGAAAGCTAAAGTTTTCTAAAAACATATTCACAGAGAGACAGAGGAGAGAGAAGGATTCGGAGGCTTTAACTTGATGTTTGACTAGATCTCGTATTTTAACTGGTTGAATCAAGTTCTGATTAAATTATAGGATTATTAATTGGTCGTATTAAG

Coding sequence (CDS)

ATGTACGACAATACAGCTCCGAGTATAGACAACATGGAAGTAGCTTTGGAACTTGAAGATGATTTGTTCTTCGCTGATTTAAGCAGACAGCTGTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCATCATCCTCATGTTTCTCTTCAGGCTCTCGCTCATGGAGGCCACCAGCCTGCACGGCCACTGGCGGTGCATGACCAAGCTGCCGCTGCTATTGTCGTTGCCTACAGTGGCGTAAGCAAAGGCACCGGCGTGTTCATCCCTCGGTCTTTGCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAACAACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGTGAATTCACAAGTATCCAACAACAATTCGTTGCGTCCCAAAAAGGGTCAAGGATTCGAGGAATTTGAGGAAAAGGGTATCAGAATTTAG

Protein sequence

MYDNTAPSIDNMEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQAAAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKKGQGFEEFEEKGIRI
Homology
BLAST of CmoCh06G014310 vs. ExPASy TrEMBL
Match: A0A6J1F5U9 (uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC111441102 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.8e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 71
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 72  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 131
           AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR
Sbjct: 61  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 120

Query: 132 PKKGQGFEEFEEKGIRI 149
           PKKGQGFEEFEEKGIRI
Sbjct: 121 PKKGQGFEEFEEKGIRI 137

BLAST of CmoCh06G014310 vs. ExPASy TrEMBL
Match: A0A6J1I9A5 (uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 71
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 60

Query: 72  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLR 131
           AAAIV AYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPI +DVNSQVSNNNSLR
Sbjct: 61  AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPITVDVNSQVSNNNSLR 120

Query: 132 PKKG 136
           PKKG
Sbjct: 121 PKKG 124

BLAST of CmoCh06G014310 vs. ExPASy TrEMBL
Match: A0A5D3D068 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00190 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 71
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP  PHVSLQAL+HG H P RPLA H+ A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 72  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL- 131
           AAA+  AY+GVSKGTGVFIPRSLQPARKQRRGR+NNIK NRQF I+IDVNSQVS+NN L 
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLM 120

Query: 132 RPKKG 136
           RPKKG
Sbjct: 121 RPKKG 124

BLAST of CmoCh06G014310 vs. ExPASy TrEMBL
Match: A0A1S3AX25 (uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQA 71
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP  PHVSLQAL+HG H P RPLA H+ A
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 72  AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSL- 131
           AAA+  AY+GVSKGTGVFIPRSLQPARKQRRGR+NNIK NRQF I+IDVNSQVS+NN L 
Sbjct: 61  AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLM 120

Query: 132 RPKKG 136
           RPKKG
Sbjct: 121 RPKKG 124

BLAST of CmoCh06G014310 vs. ExPASy TrEMBL
Match: A0A0A0LAE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.2e-47
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ- 71
           MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP HPHVSLQAL+HG H P RPLA H+  
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGVHYPTRPLATHEHA 60

Query: 72  AAAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAIDVNSQV-SNNNS 131
           AAAA+  AY+GVSKGTGVFIPRSLQPARKQRRGR+NNIK NRQF I+IDVNSQV SNN+S
Sbjct: 61  AAAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHS 120

Query: 132 LRPKKG 136
           +RPKKG
Sbjct: 121 MRPKKG 125

BLAST of CmoCh06G014310 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-----HHPHVSLQALAHGGHQPARPLA 71
           M + LEL+DD+FFAD+S+Q+SLL+MD++E   P         +S Q L  GG+Q A  + 
Sbjct: 1   MAMELELDDDVFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMY 60

Query: 72  VHDQAAAAIVVAYSGVSKGTGVFIPRSLQPARK----QRRGRYNNIKANRQFPIAIDVNS 131
             +Q            SKGTGVFIP+S QP R+    Q++GRY++  A +Q  +  +   
Sbjct: 61  QQEQ------------SKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQHSLHQNRQE 117

BLAST of CmoCh06G014310 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-12
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 0

Query: 12  MEVALELEDDLFFADLSRQLSLLLMD-DNEDPLPHHPHVSLQALAHGGHQ-PARPLAVHD 71
           M + LEL+DD+FFAD+S+QL+LL+ D D ++P+     VS Q L  G +Q  A P  +++
Sbjct: 1   MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 72  QAAAAIVVAYSGVSKGTGVFIPRSLQPARK-------QRRGRY-NNIKANRQFP-IAIDV 130
           +     V+     SKGTGVFIPRS QP RK       +++GR+  +    +QFP    D 
Sbjct: 61  EQINYNVIR---ESKGTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFPHHGHDN 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F5U95.8e-69100.00uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC1114411... [more]
A0A6J1I9A53.8e-6097.58uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261... [more]
A0A5D3D0681.7e-4784.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AX251.7e-4784.00uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=... [more]
A0A0A0LAE72.2e-4784.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G19190.13.4e-1337.21unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G06070.15.0e-1240.31unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..148
NoneNo IPR availablePANTHERPTHR34956:SF2OS05G0397300 PROTEINcoord: 12..129
NoneNo IPR availablePANTHERPTHR34956OS05G0397300 PROTEINcoord: 12..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014310.1CmoCh06G014310.1mRNA