CmoCh06G014160 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G014160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr06: 10304488 .. 10305219 (-)
RNA-Seq ExpressionCmoCh06G014160
SyntenyCmoCh06G014160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCCTCTTCTCTAAGCTAAGCTAAAAAAAATGCACAAAATCATACCTTTCCTCTTTCTTTCTATTCCCTGAGGCATTTTCCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGTAAGTTCCTTCCCTTTTGAACTCGCTTTCGTTCATGTTTTTCGGCTGCAATGCCACCATTTCCAGCTTTGAAGTTCCAAGTTTTTTCATTTTCTGGGGTTGTTTTTCAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAAGCACACCTTCCCCACCAATGTACATAAAATATTTAAAAAAAACCTCAAAAATAAAAGTTTTCCTTCATCAATTTTCATCTTTTTTTGTTCTAAATTTTTGTGTAGCTGCTTACAGTTGCTTTGTCTATTTCAGCAGTTAAGGTGGCAGTTGAATTCTAAATATTATATGTTTAAGGTTTGATTCTGATAATGACATGAGACAACTATTGAATAGATGGGATAACCTAAAGATGTTCTTGGCTTAGATTGCCTGAAATAATACCAATGCCATGAATTGAATACTTGTTTGATTATATTTAATCTTTTCTTCATAAGTTCTGTAGAATATTG

mRNA sequence

AATCCCTCTTCTCTAAGCTAAGCTAAAAAAAATGCACAAAATCATACCTTTCCTCTTTCTTTCTATTCCCTGAGGCATTTTCCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAAGCACACCTTCCCCACCAATGTACATAAAATATTTAAAAAAAACCTCAAAAATAAAAGTTTTCCTTCATCAATTTTCATCTTTTTTTGTTCTAAATTTTTGTGTAGCTGCTTACAGTTGCTTTGTCTATTTCAGCAGTTAAGGTGGCAGTTGAATTCTAAATATTATATGTTTAAGGTTTGATTCTGATAATGACATGAGACAACTATTGAATAGATGGGATAACCTAAAGATGTTCTTGGCTTAGATTGCCTGAAATAATACCAATGCCATGAATTGAATACTTGTTTGATTATATTTAATCTTTTCTTCATAAGTTCTGTAGAATATTG

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGCCTCCATTCTTCCCCCGAAAAACGAAGAGGGATATATATTCTGTATGAGGATGTAAAATCCTGTCCCTGTGAAGATGTGCATGTGCTTTGGTCAATCTTAGTGGAATCACACACTCCATACAACAAAACAATGAAACTTTCAGCCTCCTAA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPYNKTMKLSAS
Homology
[Close]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match: A0A0A0L7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 56

[Close]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match: A0A2P5E3G9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_005370 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 56
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

[Close]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match: A0A498IAF8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 56
          MGWL SLFSPLKK+WFRLHS P+KRRGIYILYEDVKSCPCEDVHVLWSILVE+HT
Sbjct: 1  MGWLHSLFSPLKKMWFRLHSGPKKRRGIYILYEDVKSCPCEDVHVLWSILVEAHT 55

[Close]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match: A0A2P5FWQ0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_019710 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHT 56
          MGWLQSLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVESHT
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVESHT 55

[Close]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match: M5XVP0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G012900 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 0 

Query: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP 57
          MGWL SLFSPLKKLWFRLHS+P+KRRGIYILYEDVKSCP EDVHVLWSILVE+HTP
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTP 56

The following BLAST results are available for this feature:
BLAST of CmoCh06G014160 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7K53.0e-2598.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1[more]
A0A2P5E3G98.2e-2394.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_005370 PE... [more]
A0A498IAF88.2e-2390.91Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1[more]
A0A2P5FWQ08.2e-2394.55Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_019710 PE=4 SV... [more]
M5XVP01.1e-2291.07Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G012900 PE=4 SV=1[more]
BLAST of CmoCh06G014160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 1..59
NoneNo IPR availablePANTHERPTHR33181:SF7OS07G0572400 PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014160.1CmoCh06G014160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001172 transcription, RNA-templated
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity