CmoCh06G014140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G014140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal L18p/L5e family protein
Location	Cmo_Chr06: 10294064 .. 10296315 (-)
RNA-Seq Expression	CmoCh06G014140
Synteny	CmoCh06G014140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTAAGGAGAGGATTTTCTTTAATTAGCCCTCACTTTGTATTGAGGGCCTGCGGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTAGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCACGCCTCAGCCATCTCCACTGTTTCCTGAGAGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATGCTTGGGCAGTTTCATTTGGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATATAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAAGGAAGATACGCAGCAAAACAAAAGCAAAGTCAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAATTGAAAGGGAGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCCCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGGCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAGTAAAGATTAAGCAGCAAAAGAGACCCAGAAAAGTTGGAAAGCCACCTTTAGCATAAGTCGGATGAAGAAAGATCATGAGGTTGCCCTTTTGACGTAAGACAACTTCCTTGATATACTGAGTAATATTGTTATAGATCCCCCCCTCTGTCATGATCTTATTTATACTTTCTGTGAGATTATTGATTTTGCTTTTCTATTGTCGAGATGTTTGAGTACATAAAGTTAAACGATTTCTTTTCTGAAATAAAACCCTTGTACAGTTTTCAATCTTGTTTAAAATCAAGGGTGCAACCATACTCATGTAGAACCACGAGTATACTGTTGGCTCAAGAAAACTTTCACATGTACCCTCATCACCCTCTGTCTTGCGCTTTCTACATCTGTTAAGACGAATGTGATCTCATCCTCCAACAGAGAGCCATTCCTTCCAAATCATCTCAATGATCACACACATACAACCCACGCTAGAATTTTTGGTATTGGGAGTTGCCATCCTCCGTCAAAGAGCCATTCCTTGCAAAACCAATCCATGATCACACACATACACAACTCACGCTAGAATTTTTGGTGTTGGGAGTTGTGTTGGATATTTCATGCGTGGATGAATGTTAAAAGTAATTCTACTAGTTTCTTAAGTTGTTTACCAACTTTCTACCGCATTACAGATCAAAATGGCAAGCGCAAGTGAGAGTGAACGCAAGGAACCCGTAAATGAGCAAATGGTTGCAAACATGTACGGTGCTTTAAGGTCTGAGCTCAATCAGATATATTCAAAAATCACAGAACTCGAAATGGAAGCGAGTGAGCACTCTCTTGTCATTTCTGCAATCGAACCACTTGATCCATCAAGAAGATGCTACAGAATGATTGGGGGAGTGCTGGTGGAAAGAACTATCAAGGAGGTTCTGCCCGCCGTTCAACGCAACAAAGAGGGAATCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAAAAGAAGGAGATTGCTGACTTGGAGGCCAAATACAAGATCAAGATTAGAAAGCCTGATGGCGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAAGGTGCAGCTCAAGGAGTCCTCGTAGGCCCTGCAGGTGAAAACTAAACCCAACCCCATCGTGAACTTTAATCATATTCTTGTAGTGCTAAACCTTATAGTTTCATCCAGATGGTTCACTGCTATAATGCATATTTGTGTGAAATTTTGTTTAAACTTTCAGTTCAATAGGAAGATCCAGAACCTTTTTGGTACATAGATGATTTTGAGGGAAAAAATTGAATGGGAAC

mRNA sequence

ATGTTCTTAAGGAGAGGATTTTCTTTAATTAGCCCTCACTTTGTATTGAGGGCCTGCGGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTAGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCACGCCTCAGCCATCTCCACTGTTTCCTGAGAGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATGCTTGGGCAGTTTCATTTGGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATATAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAAGGAAGATACGCAGCAAAACAAAAGCAAAGTCAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAATTGAAAGGGAGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCCCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGGCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAATCAAAATGGCAAGCGCAAGTGAGAGTGAACGCAAGGAACCCGTAAATGAGCAAATGGTTGCAAACATGTACGGTGCTTTAAGGTCTGAGCTCAATCAGATATATTCAAAAATCACAGAACTCGAAATGGAAGCGAGTGAGCACTCTCTTGTCATTTCTGCAATCGAACCACTTGATCCATCAAGAAGATGCTACAGAATGATTGGGGGAGTGCTGGTGGAAAGAACTATCAAGGAGGTTCTGCCCGCCGTTCAACGCAACAAAGAGGGAATCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAAAAGAAGGAGATTGCTGACTTGGAGGCCAAATACAAGATCAAGATTAGAAAGCCTGATGGCGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAAGGTGCAGCTCAAGGAGTCCTCGTAGGCCCTGCAGGTGAAAACTAAACCCAACCCCATCGTGAACTTTAATCATATTCTTGTAGTGCTAAACCTTATAGTTTCATCCAGATGGTTCACTGCTATAATGCATATTTGTGTGAAATTTTGTTTAAACTTTCAGTTCAATAGGAAGATCCAGAACCTTTTTGGTACATAGATGATTTTGAGGGAAAAAATTGAATGGGAAC

Coding sequence (CDS)

ATGTTCTTAAGGAGAGGATTTTCTTTAATTAGCCCTCACTTTGTATTGAGGGCCTGCGGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTAGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCACGCCTCAGCCATCTCCACTGTTTCCTGAGAGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATGCTTGGGCAGTTTCATTTGGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATATAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAAGGAAGATACGCAGCAAAACAAAAGCAAAGTCAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAATTGAAAGGGAGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCCCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGGCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAATCAAAATGGCAAGCGCAAGTGAGAGTGAACGCAAGGAACCCGTAAATGAGCAAATGGTTGCAAACATGTACGGTGCTTTAAGGTCTGAGCTCAATCAGATATATTCAAAAATCACAGAACTCGAAATGGAAGCGAGTGAGCACTCTCTTGTCATTTCTGCAATCGAACCACTTGATCCATCAAGAAGATGCTACAGAATGATTGGGGGAGTGCTGGTGGAAAGAACTATCAAGGAGGTTCTGCCCGCCGTTCAACGCAACAAAGAGGGAATCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAAAAGAAGGAGATTGCTGACTTGGAGGCCAAATACAAGATCAAGATTAGAAAGCCTGATGGCGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAAGGTGCAGCTCAAGGAGTCCTCGTAGGCCCTGCAGGTGAAAACTAA

Protein sequence

MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPESKPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGHVKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKIKMASASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKIRKPDGEAKEEDSGRKEGAAQGVLVGPAGEN

Homology

[Close]

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot
Match: Q9LJ98 (Probable prefoldin subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-41
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 320 MASASES-ERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPS 379
           MAS S S   +EP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVI+AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 380 RRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKIR 439
           R+C+RMIGGVLVERTIKEVLPAVQRNK+G+EEV+ +L E LEKKKK++ + EAKYKI+I 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 440 KPDGEAKEEDSGRKEGAAQGVLVGPAGEN 468
           K   E  +E   +KEG AQGVLVG A  +
Sbjct: 121 KQ--EDNKEGGNKKEGNAQGVLVGAASSS 147

[Close]

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot
Match: Q55GN3 (Probable prefoldin subunit 2 OS=Dictyostelium discoideum OX=44689 GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.3e-22
Identity = 53/112 (47.32%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 326 SERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRCYRMI 385
           S++K+ + E  +   Y  L+S+  QI S+I+E E +  E+ LVI+AI+ L+ +R+C+RM+
Sbjct: 2   SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMV 61

Query: 386 GGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKI 438
           GGVLVERT+ EVLP +++N++GI+EV+ +L+E L  K KE+ D  A YKIKI
Sbjct: 62  GGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113

[Close]

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot
Match: A1A4P5 (Prefoldin subunit 2 OS=Bos taurus OX=9913 GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-21
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 322 SASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRC 381
           S+     K  V+ + V   +  LR E   + SK  ELEME +EHSLVI  ++ +D +R+C
Sbjct: 11  SSGSGTGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 382 YRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKI---- 441
           YRM+GGVLVERT+KEVLPA++ NKE I+++I  L + L+ K KE+ +   K+ I++    
Sbjct: 71  YRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 130

Query: 442 RKPDGEAKEEDSGRKEGAAQGVLV 462
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKASSA-GVLV 153

[Close]

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot
Match: Q9UHV9 (Prefoldin subunit 2 OS=Homo sapiens OX=9606 GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-21
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 322 SASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRC 381
           S+     K  V+ + V   +  LR E   + SK  ELEME +EHSLVI  ++ +D +R+C
Sbjct: 11  SSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 382 YRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKI---- 441
           YRM+GGVLVERT+KEVLPA++ NKE I+++I  L + L+ K KE+ +   K+ I++    
Sbjct: 71  YRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 130

Query: 442 RKPDGEAKEEDSGRKEGAAQGVLV 462
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKASSA-GVLV 153

[Close]

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot
Match: B0BN18 (Prefoldin subunit 2 OS=Rattus norvegicus OX=10116 GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-21
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 322 SASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRC 381
           S      K  V+ + V   +  LR E   + SK  ELEME +EHSLVI  ++ +D +R+C
Sbjct: 11  SGGSGTGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 382 YRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKI---- 441
           YRM+GGVLVERT+KEVLPA++ NKE I+++I  L++ L+ K KE+ +   K+ I++    
Sbjct: 71  YRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGED 130

Query: 442 RKPDGEAKEEDSGRKEGAAQGVLV 462
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKSSSA-GVLV 153

[Close]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL
Match: A0A6J1F7N1 (uncharacterized protein LOC111441610 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441610 PE=4 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 4.8e-178
Identity = 318/320 (99.38%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60
           MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES
Sbjct: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60

Query: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120
           KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD
Sbjct: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120

Query: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180
           IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH
Sbjct: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180

Query: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240
           VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR
Sbjct: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240

Query: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300
           GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG
Sbjct: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300

Query: 301 KLQIVLQSVIDNGINVKIKM 321
           KLQIVLQSVIDNGINVK+K+
Sbjct: 301 KLQIVLQSVIDNGINVKVKI 320

[Close]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL
Match: A0A6J1I8E0 (uncharacterized protein LOC111472322 OS=Cucurbita maxima OX=3661 GN=LOC111472322 PE=4 SV=1)

HSP 1 Score: 610.5 bits (1573), Expect = 5.7e-171
Identity = 310/320 (96.88%), Postives = 312/320 (97.50%), Query Frame = 0


Query: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60
           MFLRRGFSLISPHFVLRAC FGSKALAKGIL SENERVAHSDSIVNGSST QPSPLFPE 
Sbjct: 1   MFLRRGFSLISPHFVLRACSFGSKALAKGILGSENERVAHSDSIVNGSSTTQPSPLFPEG 60

Query: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120
           KPHSVAYDVELIDDD WAVSF LARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD
Sbjct: 61  KPHSVAYDVELIDDDTWAVSFSLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120

Query: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180
           IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH
Sbjct: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180

Query: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240
           VKLPEHVKNKYVIIER ENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR
Sbjct: 181 VKLPEHVKNKYVIIER-ENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240

Query: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300
            TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG
Sbjct: 241 VTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300

Query: 301 KLQIVLQSVIDNGINVKIKM 321
           KLQIVLQSVIDNGINVK+K+
Sbjct: 301 KLQIVLQSVIDNGINVKVKI 319

[Close]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL
Match: A0A6J1C8X9 (uncharacterized protein LOC111009286 OS=Momordica charantia OX=3673 GN=LOC111009286 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 1.3e-143
Identity = 265/320 (82.81%), Postives = 287/320 (89.69%), Query Frame = 0


Query: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60
           MFLRRGF+ ISPHF LR C F SKAL KGIL SENERV+ SD I NGS   Q SPLFP+ 
Sbjct: 1   MFLRRGFAFISPHFFLRGCSFCSKALPKGILGSENERVSRSDGIANGSFRHQLSPLFPDD 60

Query: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120
           KP S AYDVEL+DDD WAVS GLA AWEGREK  SG +N+YFLE+EDHDP+DYCDS+ DD
Sbjct: 61  KPQSGAYDVELVDDDTWAVSCGLAGAWEGREKAWSGLENKYFLEEEDHDPVDYCDSDLDD 120

Query: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180
           IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSI  KED +Q++S++NDKP+N LASG+
Sbjct: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSI--KEDQKQSRSRINDKPDNCLASGY 180

Query: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240
           VKLPEHVKNKYVI+ER +N+D EKKLRTPTFNQLT PYHEPFCLDIYISKASVRACIIHR
Sbjct: 181 VKLPEHVKNKYVIVER-DNDDVEKKLRTPTFNQLTGPYHEPFCLDIYISKASVRACIIHR 240

Query: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300
            TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRK ERIEG
Sbjct: 241 VTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKFERIEG 300

Query: 301 KLQIVLQSVIDNGINVKIKM 321
           KLQIVLQSVIDNG+NVK+K+
Sbjct: 301 KLQIVLQSVIDNGMNVKVKI 317

[Close]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL
Match: A0A1S3CAH6 (uncharacterized protein LOC103498514 OS=Cucumis melo OX=3656 GN=LOC103498514 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.5e-142
Identity = 263/330 (79.70%), Postives = 288/330 (87.27%), Query Frame = 0


Query: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60
           MFLRRGF+  SP  VLRAC F SKA   G + SENERVAHS+SI NGSS PQ +PLFP+ 
Sbjct: 1   MFLRRGFAFTSPQNVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSSRPQLTPLFPDD 60

Query: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120
           KP SVAYD+EL+DDD WAVS GLARAWEGREKG SG +NRY LEDE HDP+DYCDS+FDD
Sbjct: 61  KPRSVAYDIELVDDDTWAVSCGLARAWEGREKGWSGLENRYSLEDEAHDPVDYCDSDFDD 120

Query: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180
           IDNMRIRGNLFYKLDRGSKEF+EYS DFHRKKKSIKEKE+ ++++SKVNDK +  L SG 
Sbjct: 121 IDNMRIRGNLFYKLDRGSKEFDEYSLDFHRKKKSIKEKENREKSRSKVNDKLDKCLPSGQ 180

Query: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240
           VKLPEH+KNKYVI+ER EN+D EKKLRTPTFNQLT  YHEPFCLDIYISKASVRACIIHR
Sbjct: 181 VKLPEHLKNKYVIVER-ENDDVEKKLRTPTFNQLTGLYHEPFCLDIYISKASVRACIIHR 240

Query: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300
            TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNL+YTPRKGERIEG
Sbjct: 241 VTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLIYTPRKGERIEG 300

Query: 301 KLQIVLQSVIDNGINVKIKMASASESERKE 331
           KLQ+VLQSVIDNGINVK+K+       + E
Sbjct: 301 KLQVVLQSVIDNGINVKVKIKQQKRPRKLE 329

[Close]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL
Match: A0A0A0KSG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638320 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 6.2e-141
Identity = 261/320 (81.56%), Postives = 283/320 (88.44%), Query Frame = 0


Query: 1   MFLRRGFSLISPHFVLRACGFGSKALAKGILRSENERVAHSDSIVNGSSTPQPSPLFPES 60
           MFLRRGF+  SP FVLRAC F SKA   G + SENERVAHS+SI NGS  PQ +PLFP+ 
Sbjct: 1   MFLRRGFAFTSPQFVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSCRPQLTPLFPDD 60

Query: 61  KPHSVAYDVELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDD 120
           KP SVAYDVEL+DDD WAVS GLARAWE REKG SGF+NRY LEDE HDP+DYCDS+FDD
Sbjct: 61  KPCSVAYDVELVDDDTWAVSCGLARAWEAREKGWSGFENRYSLEDEAHDPVDYCDSDFDD 120

Query: 121 IDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGH 180
           IDNMRIRGNLFYKLD+ SKEFEE S DFHRKKKS+KEKED  + +SKVNDK +  LASG 
Sbjct: 121 IDNMRIRGNLFYKLDQASKEFEECSLDFHRKKKSLKEKEDMVKRRSKVNDKLDKCLASGQ 180

Query: 181 VKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHR 240
           VKLPEH+KNKYVI+ER EN+D EKKLRTPTFNQLT+PYHEPFCLDI+ISKASVRACIIHR
Sbjct: 181 VKLPEHLKNKYVIVER-ENDDVEKKLRTPTFNQLTSPYHEPFCLDIFISKASVRACIIHR 240

Query: 241 GTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEG 300
            TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRAL DDIHNL+YTPRKGERIEG
Sbjct: 241 VTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALGDDIHNLIYTPRKGERIEG 300

Query: 301 KLQIVLQSVIDNGINVKIKM 321
           KLQIVLQSVIDNGINV +K+
Sbjct: 301 KLQIVLQSVIDNGINVTVKI 319

[Close]

BLAST of CmoCh06G014140 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-68
Identity = 143/263 (54.37%), Postives = 186/263 (70.72%), Query Frame = 0


Query: 69  VELIDDDAWAVSFGLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRG 128
           +E +DDD W VS  L++AW  + +  +  ++   ++      +D  D + D+IDNMRIRG
Sbjct: 49  IETVDDDVWHVSSSLSQAWR-QFQADTAKNSPVTIQGVRETILDDEDPDHDEIDNMRIRG 108

Query: 129 NLFYKLDRGSKEFEEYSFDFHRK------KKSIKEKEDT---QQNKSKVND--KPNNHLA 188
           +LF+KLDRGSKEFEEY++DFHRK      KK   ++E+T   + NK +V D  K  N   
Sbjct: 109 DLFFKLDRGSKEFEEYNYDFHRKNQHKNAKKEQNQEEETKIKKDNKKEVRDEYKKRNDSF 168

Query: 189 SGHVKLPEHVKNKYVIIEREENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACI 248
           +G    P              N   +K+ RT TFNQLTAP+H PFCLDIYISK SVRAC+
Sbjct: 169 TGETDHP--------------NEAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACV 228

Query: 249 IHRGTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGER 308
           IHR TSKVV VAHSISKDMKFDL SR++ +ACAAVGAVLAQR+L DDIH+++YTPRKG++
Sbjct: 229 IHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDK 288

Query: 309 IEGKLQIVLQSVIDNGINVKIKM 321
           IEGKLQ+VLQ++IDNG+NVK+K+
Sbjct: 289 IEGKLQVVLQALIDNGVNVKVKL 296

[Close]

BLAST of CmoCh06G014140 vs. TAIR 10
Match: AT3G22480.2 (prefoldin 2 )

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-43
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 320 MASASES-ERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPS 379
           MAS S S   +EP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVI+AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 380 RRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKIR 439
           R+C+RMIGGVLVERTIKEVLPAVQRNK+G+EEV+ +L E LEKKKK++ + EAKYKI+I 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 440 KPDGEAKEEDSGRKEGAAQGVLVGPAGEN 468
           K   E  +E   +KEG AQGVLVG A  +
Sbjct: 121 KQ--EDNKEGGNKKEGNAQGVLVGAASSS 147

[Close]

BLAST of CmoCh06G014140 vs. TAIR 10
Match: AT3G22480.1 (prefoldin 2 )

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-43
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 320 MASASES-ERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPS 379
           MAS S S   +EP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVI+AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 380 RRCYRMIGGVLVERTIKEVLPAVQRNKEGIEEVISRLNEALEKKKKEIADLEAKYKIKIR 439
           R+C+RMIGGVLVERTIKEVLPAVQRNK+G+EEV+ +L E LEKKKK++ + EAKYKI+I 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 440 KPDGEAKEEDSGRKEGAAQGVLVGPAGEN 468
           K   E  +E   +KEG AQGVLVG A  +
Sbjct: 121 KQ--EDNKEGGNKKEGNAQGVLVGAASSS 147

[Close]

BLAST of CmoCh06G014140 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-23
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 203 EKKLRTP----TFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKF 262
           EKK + P    +F Q T  Y EPF LD++ISK  V A + HR T + VAVA + SKD+K 
Sbjct: 67  EKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKA 126

Query: 263 DLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKI 319
            L SR D  AC ++G +L++RA   D++   YTPR  ++ EGK++ V+QS+IDNGI+VKI
Sbjct: 127 VLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKI 186

[Close]

BLAST of CmoCh06G014140 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-23
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 203 EKKLRTP----TFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKF 262
           EKK + P    +F Q T  Y EPF LD++ISK  V A + HR T + VAVA + SKD+K 
Sbjct: 112 EKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKA 171

Query: 263 DLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKI 319
            L SR D  AC ++G +L++RA   D++   YTPR  ++ EGK++ V+QS+IDNGI+VKI
Sbjct: 172 VLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKI 231

The following BLAST results are available for this feature:

BLAST of CmoCh06G014140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJ98	1.1e-41	65.77	Probable prefoldin subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At3g22480 PE=2 S...	[more]
Q55GN3	7.3e-22	47.32	Probable prefoldin subunit 2 OS=Dictyostelium discoideum OX=44689 GN=pfdn2 PE=3 ...	[more]
A1A4P5	1.6e-21	43.06	Prefoldin subunit 2 OS=Bos taurus OX=9913 GN=PFDN2 PE=2 SV=1	[more]
Q9UHV9	1.6e-21	43.06	Prefoldin subunit 2 OS=Homo sapiens OX=9606 GN=PFDN2 PE=1 SV=1	[more]
B0BN18	2.1e-21	43.06	Prefoldin subunit 2 OS=Rattus norvegicus OX=10116 GN=Pfdn2 PE=2 SV=1	[more]

BLAST of CmoCh06G014140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7N1	4.8e-178	99.38	uncharacterized protein LOC111441610 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I8E0	5.7e-171	96.88	uncharacterized protein LOC111472322 OS=Cucurbita maxima OX=3661 GN=LOC111472322...	[more]
A0A6J1C8X9	1.3e-143	82.81	uncharacterized protein LOC111009286 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A1S3CAH6	1.5e-142	79.70	uncharacterized protein LOC103498514 OS=Cucumis melo OX=3656 GN=LOC103498514 PE=...	[more]
A0A0A0KSG6	6.2e-141	81.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638320 PE=4 SV=1	[more]

BLAST of CmoCh06G014140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22450.1	3.1e-68	54.37	Ribosomal L18p/L5e family protein	[more]
AT3G22480.2	7.7e-43	65.77	prefoldin 2	[more]
AT3G22480.1	7.7e-43	65.77	prefoldin 2	[more]
AT1G08845.1	1.8e-23	48.33	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.8e-23	48.33	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 405..439
None	No IPR available	COILS	Coil	Coil	coord: 341..361
None	No IPR available	GENE3D	3.30.420.100		coord: 203..315 e-value: 1.7E-14 score: 56.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..453
None	No IPR available	PANTHER	PTHR12899:SF7	EXPRESSED PROTEIN	coord: 46..323
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 218..314 e-value: 2.04885E-17 score: 75.6543
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 338..435
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 205..314
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 331..440 e-value: 8.2E-23 score: 82.3
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 224..315 e-value: 5.6E-8 score: 33.1
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 46..323
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 335..438 e-value: 1.0E-24 score: 86.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G014140.1	CmoCh06G014140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016272	prefoldin complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051082	unfolded protein binding