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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA mRNA sequence ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA Coding sequence (CDS) ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA Protein sequence MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPPVSMF
Homology
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1GD64 (vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 Query: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120
Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP Sbjct: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180
Query: 181 VSMF 185 VSMF Sbjct: 181 VSMF 184
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1IL49 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111475363 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87 Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0 Query: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSF SHGEFLPFKNSAPLSRFLLVGDSPEF Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPP+TPGPDFPGLPSPLPPGPD PVPPVP Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVPPVP 120
Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEI TSPSSPDIPP Sbjct: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEIFTSPSSPDIPP 180
Query: 181 VSMF 185 V+MF Sbjct: 181 VAMF 184
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A5D3D162 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00890 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 3.6e-44 Identity = 123/187 (65.78%), Postives = 133/187 (71.12%), Query Frame = 0 Query: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60 MSCTS FSFTLI KTLP YY SSSN V P SH +FL F S LSR +L GDSPE Sbjct: 5 MSCTSLFSFTLITKTLPSYY--PSSSNFVTPLLFSHSQFLSFNEYSTSLSRSMLSGDSPE 64
Query: 61 FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120 FP+ P+P PS+PLEIPQ S PEIDP TP ELP +TP PDF P P PPGP+ P PP Sbjct: 65 FPKSRPVPPPSLPLEIPQFSPPPEIDPSTPSELPSITPEPDF---PDPRPPGPEFPKPPS 124
Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 180 PSPPGIDVP+PP +PPDIEPP PGSPVP P+ILPP PPE PPRPP GPEILTSP Sbjct: 125 PSPPGIDVPVPPRRPPDIEPPWPGSPVPGPEILPPSPPEEMPPRPPGPPRPFGPEILTSP 184
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A0A0L4M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41 Identity = 119/183 (65.03%), Postives = 131/183 (71.58%), Query Frame = 0 Query: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60 MS TS FSFTLIRKTLP YY SS+ + P SH +FLPF A LS LL GDSPE Sbjct: 5 MSYTSLFSFTLIRKTLPSYYPCSSNF-AINPFLFSHSQFLPFNEYPASLSLSLLSGDSPE 64
Query: 61 FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120 FP+ P+P PS PLEIPQ S PEIDP TP ELP +TP P+FP P PPGP+ P PP+ Sbjct: 65 FPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPL 124
Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 177 PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE PPRPP GPEILTS Sbjct: 125 PSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSA 182
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6P5SZB6 (vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12 Identity = 79/198 (39.90%), Postives = 107/198 (54.04%), Query Frame = 0 Query: 2 SCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSP--- 61 S S FS TLIR+T+P S +S+++ F S K PL+ +L P Sbjct: 3 SSISSFSSTLIRRTIPFCSSPTSTTSATSTQFLSRKR----KPIRPLASHILARALPYPP 62
Query: 62 -EFPQKS------PIP----EPSVPLEIPQISTSPEID--PITPPEL----PPLTPGPDF 121 ++P +S P+P +PS P E+P ISTSP++D P+ PPE+ PPL PGP+ Sbjct: 63 DQYPTRSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTPVPPPEVNPYPPPLDPGPN- 122
Query: 122 PGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPP 180 PGPD PVPP+ PP PDI PP P +P+P+PD++PP PP+ P Sbjct: 123 --------PGPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDVVPPQPPDIVP 177
BLAST of CmoCh06G013690 vs. TAIR 10
Match: AT5G43770.1 (proline-rich family protein ) HSP 1 Score: 49.3 bits (116), Expect = 3.9e-06 Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 0 Query: 18 IYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQ 77 I + S S +PS PS G L APL V + P P+ SP P P+ Sbjct: 63 IKFPGGSPSEKELPSGPSRGPEL-----APLE----VPELPNIPEISPSETP------PE 122
Query: 78 ISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDI 137 ++T P DP PP PP TPGP+FP PSP PP PD P PP P P P PP Sbjct: 123 VTTVPS-DP--PPLGPPQTPGPEFPVPPSPSPPMPDTPNPPTPKTP------PDVVPPIW 182
Query: 138 EPPRPGSPVPEPDILPP--PPPEFPPPRPPGPEIL 171 EPPRP PDI PP PPP PP P GP I+ Sbjct: 183 EPPRP------PDIFPPESPPPGIDPPPPLGPTIM 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GD64 | 3.3e-90 | 100.00 | vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 P... | [more] |
A0A6J1IL49 | 1.6e-87 | 97.28 | leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
A0A5D3D162 | 3.6e-44 | 65.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L4M0 | 4.9e-41 | 65.03 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1 | [more] |
A0A6P5SZB6 | 1.6e-12 | 39.90 | vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
AT5G43770.1 | 3.9e-06 | 43.23 | proline-rich family protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 105..121 score: 34.12 coord: 122..139 score: 33.33 coord: 58..70 score: 36.92 coord: 81..102 score: 31.82 coord: 140..165 score: 32.31 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 86..174 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 56..184 |
Relationships
The following mRNA feature(s) are a part of this gene:
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