CmoCh06G013690 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G013690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionvegetative cell wall protein gp1
LocationCmo_Chr06: 10102428 .. 10102982 (+)
RNA-Seq ExpressionCmoCh06G013690
SyntenyCmoCh06G013690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA

mRNA sequence

ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA

Coding sequence (CDS)

ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA

Protein sequence

MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPPVSMF
Homology
BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1GD64 (vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
           MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF
Sbjct: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60

Query: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120
           PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP
Sbjct: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180
           SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP
Sbjct: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180

Query: 181 VSMF 185
           VSMF
Sbjct: 181 VSMF 184

BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6J1IL49 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111475363 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
           MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSF SHGEFLPFKNSAPLSRFLLVGDSPEF
Sbjct: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60

Query: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVP 120
           PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPP+TPGPDFPGLPSPLPPGPD PVPPVP
Sbjct: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVPPVP 120

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPP 180
           SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEI TSPSSPDIPP
Sbjct: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEIFTSPSSPDIPP 180

Query: 181 VSMF 185
           V+MF
Sbjct: 181 VAMF 184

BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A5D3D162 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00890 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.6e-44
Identity = 123/187 (65.78%), Postives = 133/187 (71.12%), Query Frame = 0

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60
           MSCTS FSFTLI KTLP YY   SSSN V P   SH +FL F   S  LSR +L GDSPE
Sbjct: 5   MSCTSLFSFTLITKTLPSYY--PSSSNFVTPLLFSHSQFLSFNEYSTSLSRSMLSGDSPE 64

Query: 61  FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120
           FP+  P+P PS+PLEIPQ S  PEIDP TP ELP +TP PDF   P P PPGP+ P PP 
Sbjct: 65  FPKSRPVPPPSLPLEIPQFSPPPEIDPSTPSELPSITPEPDF---PDPRPPGPEFPKPPS 124

Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 180
           PSPPGIDVP+PP +PPDIEPP PGSPVP P+ILPP PPE  PPRPP      GPEILTSP
Sbjct: 125 PSPPGIDVPVPPRRPPDIEPPWPGSPVPGPEILPPSPPEEMPPRPPGPPRPFGPEILTSP 184

BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A0A0L4M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 119/183 (65.03%), Postives = 131/183 (71.58%), Query Frame = 0

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60
           MS TS FSFTLIRKTLP YY  SS+   + P   SH +FLPF    A LS  LL GDSPE
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNF-AINPFLFSHSQFLPFNEYPASLSLSLLSGDSPE 64

Query: 61  FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120
           FP+  P+P PS PLEIPQ S  PEIDP TP ELP +TP P+FP    P PPGP+ P PP+
Sbjct: 65  FPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPL 124

Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 177
           PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS 
Sbjct: 125 PSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSA 182

BLAST of CmoCh06G013690 vs. ExPASy TrEMBL
Match: A0A6P5SZB6 (vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 79/198 (39.90%), Postives = 107/198 (54.04%), Query Frame = 0

Query: 2   SCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSP--- 61
           S  S FS TLIR+T+P   S +S+++     F S       K   PL+  +L    P   
Sbjct: 3   SSISSFSSTLIRRTIPFCSSPTSTTSATSTQFLSRKR----KPIRPLASHILARALPYPP 62

Query: 62  -EFPQKS------PIP----EPSVPLEIPQISTSPEID--PITPPEL----PPLTPGPDF 121
            ++P +S      P+P    +PS P E+P ISTSP++D  P+ PPE+    PPL PGP+ 
Sbjct: 63  DQYPTRSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTPVPPPEVNPYPPPLDPGPN- 122

Query: 122 PGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPP 180
                   PGPD PVPP+  PP           PDI PP P +P+P+PD++PP PP+  P
Sbjct: 123 --------PGPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDVVPPQPPDIVP 177

BLAST of CmoCh06G013690 vs. TAIR 10
Match: AT5G43770.1 (proline-rich family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-06
Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 0

Query: 18  IYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQ 77
           I +   S S   +PS PS G  L     APL     V + P  P+ SP   P      P+
Sbjct: 63  IKFPGGSPSEKELPSGPSRGPEL-----APLE----VPELPNIPEISPSETP------PE 122

Query: 78  ISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDI 137
           ++T P  DP  PP  PP TPGP+FP  PSP PP PD P PP P  P      P   PP  
Sbjct: 123 VTTVPS-DP--PPLGPPQTPGPEFPVPPSPSPPMPDTPNPPTPKTP------PDVVPPIW 182

Query: 138 EPPRPGSPVPEPDILPP--PPPEFPPPRPPGPEIL 171
           EPPRP      PDI PP  PPP   PP P GP I+
Sbjct: 183 EPPRP------PDIFPPESPPPGIDPPPPLGPTIM 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GD643.3e-90100.00vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 P... [more]
A0A6J1IL491.6e-8797.28leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A5D3D1623.6e-4465.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L4M04.9e-4165.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1[more]
A0A6P5SZB61.6e-1239.90vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT5G43770.13.9e-0643.23proline-rich family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 105..121
score: 34.12
coord: 122..139
score: 33.33
coord: 58..70
score: 36.92
coord: 81..102
score: 31.82
coord: 140..165
score: 32.31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G013690.1CmoCh06G013690.1mRNA