CmoCh06G013570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G013570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr06: 10040807 .. 10041932 (+)
RNA-Seq Expression	CmoCh06G013570
Synteny	CmoCh06G013570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACAAAAGAGAGAGAAAAAGAAGAAAAAAATTCAAACTTTGACCCAGGATTTGCTCTGCTATGGCGTTTGAAGCTGGCCTCAACCTCGACGCGACGGAGCTCCGCCTTGGACCGCCGGGAGTCGACGGCAATAAGCAAGAACCTCAATCTCTCAGAATCATTAACAATAAACGACCCTTATTGCCGGAATCCAACCAAAGCTCCTCCGCTTCAAATATCTCCGTTTCCGATGACAATCTCGAAACCCCACCTCCTTCCAAGTGAGTTTAGATTCAAACCTTGTAAAAATCGAAACTTTTTGATTGATGATTAAATTTTTTTTTGTGGGTTTGTTGTTGTTTAGAGCTCAGATTGTGGGGTGGCCGCCGGTTCAATCGTTTAGAAGAAACAGCCTTCAAGGGAAGAAAACGGCGGCGGCGGCGACGGCGGCGGGAGAGAGTACTGCCAATTACGTGAAAGTGAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATCTTAGTTTATACAAAGGGTACACCGAACTTCTTCAAGCTCTAGAAGATATGTTCAAGTTCACCGTAGGTACGTGTTATTAGAAATTACGAATCTCTACAATCATATAATACTGTCTACTTTAAGCATAAGCTCTCCCTACCTTACATGACATGAAAAGTATTGTTTTTGAGTGAAATTAATGATAAAGTTTTGATTTTTTTAGGTGAATACTCGGAGAGAGAAGGGTACAAAGGATCGGAATACGTTCCAACATACGAGGATAAAGATGGCGATTGGATGCTTGTCGGAGATGTTCCATGGGAGATGTTTATGTCGTCGTGCAAGAGGCTGAGAATCATGAAAGGATCGGAAGCGAAGGGATTAGGGTGTGTTGCATGAAACAATGAAAAAGAAGAAGCTTTATTATTTAGAGGGAGAAGAAGAGAAGGAGACATGGGCTTGGGTTGTCGAGGAAGAAGAAGAAGAAGATGATGATGAACTTCAAAGATGGAATTTTTATTTGTATTTTTGTGGAAAAAGAAAGGATTTTTGAGGGAACAAATTTGATGCATTTTGATCATCTTTGTGGAACTTAATCGCGAGTGTCCATTGGATTTTATCCATTATCCATTATCTGCATACACCAC

mRNA sequence

CAAACAAAAGAGAGAGAAAAAGAAGAAAAAAATTCAAACTTTGACCCAGGATTTGCTCTGCTATGGCGTTTGAAGCTGGCCTCAACCTCGACGCGACGGAGCTCCGCCTTGGACCGCCGGGAGTCGACGGCAATAAGCAAGAACCTCAATCTCTCAGAATCATTAACAATAAACGACCCTTATTGCCGGAATCCAACCAAAGCTCCTCCGCTTCAAATATCTCCGTTTCCGATGACAATCTCGAAACCCCACCTCCTTCCAAAGCTCAGATTGTGGGGTGGCCGCCGGTTCAATCGTTTAGAAGAAACAGCCTTCAAGGGAAGAAAACGGCGGCGGCGGCGACGGCGGCGGGAGAGAGTACTGCCAATTACGTGAAAGTGAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATCTTAGTTTATACAAAGGGTACACCGAACTTCTTCAAGCTCTAGAAGATATGTTCAAGTTCACCGTAGGTGAATACTCGGAGAGAGAAGGGTACAAAGGATCGGAATACGTTCCAACATACGAGGATAAAGATGGCGATTGGATGCTTGTCGGAGATGTTCCATGGGAGATGTTTATGTCGTCGTGCAAGAGGCTGAGAATCATGAAAGGATCGGAAGCGAAGGGATTAGGGTGTGTTGCATGAAACAATGAAAAAGAAGAAGCTTTATTATTTAGAGGGAGAAGAAGAGAAGGAGACATGGGCTTGGGTTGTCGAGGAAGAAGAAGAAGAAGATGATGATGAACTTCAAAGATGGAATTTTTATTTGTATTTTTGTGGAAAAAGAAAGGATTTTTGAGGGAACAAATTTGATGCATTTTGATCATCTTTGTGGAACTTAATCGCGAGTGTCCATTGGATTTTATCCATTATCCATTATCTGCATACACCAC

Coding sequence (CDS)

ATGGCGTTTGAAGCTGGCCTCAACCTCGACGCGACGGAGCTCCGCCTTGGACCGCCGGGAGTCGACGGCAATAAGCAAGAACCTCAATCTCTCAGAATCATTAACAATAAACGACCCTTATTGCCGGAATCCAACCAAAGCTCCTCCGCTTCAAATATCTCCGTTTCCGATGACAATCTCGAAACCCCACCTCCTTCCAAAGCTCAGATTGTGGGGTGGCCGCCGGTTCAATCGTTTAGAAGAAACAGCCTTCAAGGGAAGAAAACGGCGGCGGCGGCGACGGCGGCGGGAGAGAGTACTGCCAATTACGTGAAAGTGAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATCTTAGTTTATACAAAGGGTACACCGAACTTCTTCAAGCTCTAGAAGATATGTTCAAGTTCACCGTAGGTGAATACTCGGAGAGAGAAGGGTACAAAGGATCGGAATACGTTCCAACATACGAGGATAAAGATGGCGATTGGATGCTTGTCGGAGATGTTCCATGGGAGATGTTTATGTCGTCGTGCAAGAGGCTGAGAATCATGAAAGGATCGGAAGCGAAGGGATTAGGGTGTGTTGCATGA

Protein sequence

MAFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGLGCVA

Homology

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BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-61
Identity = 124/203 (61.08%), Postives = 149/203 (73.40%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVDGNKQEPQSLR----IINNKRPLLPESNQSSSASNISVS 60
           + FE+ LNL ATELRLG PG +  ++E  +LR    + NNKR +   S  S S S  S  
Sbjct: 5   VVFESDLNLKATELRLGLPGTE--EKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHH 64

Query: 61  DDNLET--PPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYL 120
             ++ET   PP KA+IVGWPP++S+R+NS+Q           GE    +VKVSMDGAPYL
Sbjct: 65  QQHVETVSAPPPKAKIVGWPPIRSYRKNSVQ----------EGEGDGIFVKVSMDGAPYL 124

Query: 121 RKIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWE 180
           RK+DL +Y GY ELL+ALE MFK  +GEYSEREGYKGSEY PTYEDKDGDWMLVGDVPW+
Sbjct: 125 RKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWD 184

Query: 181 MFMSSCKRLRIMKGSEAKGLGCV 198
           MF++SCKRLRIMKGSEA+GLGCV
Sbjct: 185 MFVTSCKRLRIMKGSEARGLGCV 195

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BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-60
Identity = 122/192 (63.54%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDG--NKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPP 66
           +NL  TELRLG PG D     +E  S    NNKR L      + +   I  S    ET P
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVL-----STDTEKEIESSSRKTETSP 64

Query: 67  PSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKG 126
           P KAQIVGWPPV+S+R+N++Q KK      +  E    YVKVSMDGAPYLRKIDLS YKG
Sbjct: 65  PRKAQIVGWPPVRSYRKNNIQSKKN----ESEHEGQGIYVKVSMDGAPYLRKIDLSCYKG 124

Query: 127 YTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLR 186
           Y+ELL+ALE MFKF+VGEY ER+GYKGS++VPTYEDKDGDWML+GDVPWEMF+ +CKRLR
Sbjct: 125 YSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLR 184

Query: 187 IMKGSEAKGLGC 197
           IMKGSEAKGLGC
Sbjct: 185 IMKGSEAKGLGC 187

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BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-60
Identity = 124/206 (60.19%), Postives = 151/206 (73.30%), Query Frame = 0


Query: 2   AFEAGLNLDATELRLGPPGVD-GNKQEPQSLRII--NNKR--PLLPESN-----QSSSAS 61
           ++E  LNL ATELRLG PG D   ++ P S  ++  +NKR  P L ES       S S+ 
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62

Query: 62  NISVSDDNLETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGA 121
           + + SD N ++  P+K Q+VGWPP++SFR+NSLQ KK        G+ T  Y+KVSM GA
Sbjct: 63  STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKK-----VEQGDGTGMYLKVSMAGA 122

Query: 122 PYLRKIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDV 181
           PYLRKIDL +YK Y ELL+AL+++FK T GEYSEREGY GSEY PTYEDKDGDWMLVGDV
Sbjct: 123 PYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDV 182

Query: 182 PWEMFMSSCKRLRIMKGSEAKGLGCV 198
           PW MF+SSCKRLRI+KGSEAKGLGC+
Sbjct: 183 PWNMFVSSCKRLRIIKGSEAKGLGCL 203

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BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-59
Identity = 119/195 (61.03%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 2   AFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLE 61
           ++E  LNL ATELRLG PG D    EP+      + +   PE++   S SN S       
Sbjct: 7   SYEKELNLKATELRLGLPGSD----EPEKRATARSNKRSSPEASDEESISNGSDVTKEDN 66

Query: 62  TPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSL 121
             PP+KAQ+VGWPP++S+R+N++Q KK   +     E    YVKVSM GAPYLRKIDL +
Sbjct: 67  VVPPAKAQVVGWPPIRSYRKNNVQQKKEEES-----EGNGMYVKVSMAGAPYLRKIDLKV 126

Query: 122 YKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCK 181
           YK Y ELL+ALE+MFK   GEYSEREGY GSEY PTYEDKDGDWMLVGDVPW MF+SSCK
Sbjct: 127 YKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCK 186

Query: 182 RLRIMKGSEAKGLGC 197
           RLRIMKGSEAKGLGC
Sbjct: 187 RLRIMKGSEAKGLGC 192

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BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 228.4 bits (581), Expect = 7.0e-59
Identity = 120/190 (63.16%), Postives = 143/190 (75.26%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPPPS 66
           +NL ATELRLG PG +      +S     NKR +LPE+ +    S         ET  P 
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKS-----NKR-VLPEATEKEIEST-----GKTETASPP 70

Query: 67  KAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKGYT 126
           KAQIVGWPPV+S+R+N++Q KK+ +      E   NYVKVSMDGAPYLRKIDL++YK Y 
Sbjct: 71  KAQIVGWPPVRSYRKNNVQTKKSES------EGQGNYVKVSMDGAPYLRKIDLTMYKQYP 130

Query: 127 ELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIM 186
           EL+++LE+MFKF+VGEY EREGYKGS++VPTYEDKDGDWMLVGDVPWEMF+SSCKRLRIM
Sbjct: 131 ELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIM 183

Query: 187 KGSEAKGLGC 197
           KGSE KGLGC
Sbjct: 191 KGSEVKGLGC 183

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BLAST of CmoCh06G013570 vs. ExPASy TrEMBL
Match: A0A6J1FRY1 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111447904 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.2e-107
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL 60
           MAFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL
Sbjct: 1   MAFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL 60

Query: 61  ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLS 120
           ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLS
Sbjct: 61  ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLS 120

Query: 121 LYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC 180
           LYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC
Sbjct: 121 LYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC 180

Query: 181 KRLRIMKGSEAKGLGCVA 199
           KRLRIMKGSEAKGLGCVA
Sbjct: 181 KRLRIMKGSEAKGLGCVA 198

[Close]

BLAST of CmoCh06G013570 vs. ExPASy TrEMBL
Match: A0A6J1IAA9 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111473119 PE=3 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.8e-104
Identity = 192/198 (96.97%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL 60
           MAFEAGLNLDATELRLGPPGVD NKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL
Sbjct: 1   MAFEAGLNLDATELRLGPPGVDDNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNL 60

Query: 61  ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLS 120
           ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAA A AAGEST NYVKVSMDGAPYLRKIDLS
Sbjct: 61  ETPPPSKAQIVGWPPVQSFRRNSLQGKKTAATAAAAGESTGNYVKVSMDGAPYLRKIDLS 120

Query: 121 LYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC 180
           LYKGY ELLQ LEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC
Sbjct: 121 LYKGYPELLQTLEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSC 180

Query: 181 KRLRIMKGSEAKGLGCVA 199
           KRLRIMKGSEAKGLGCVA
Sbjct: 181 KRLRIMKGSEAKGLGCVA 198

[Close]

BLAST of CmoCh06G013570 vs. ExPASy TrEMBL
Match: A0A6J1IXI2 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480070 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.1e-90
Identity = 175/203 (86.21%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVD----GNKQEPQSLRIINNKRPLLPESNQSSSASNISVS 60
           MAF+  LNLDATELRLGPPG D     N+++PQSLRIINNKRPLLPESNQSSSASNISVS
Sbjct: 1   MAFQNCLNLDATELRLGPPGADDDNNNNQEQPQSLRIINNKRPLLPESNQSSSASNISVS 60

Query: 61  DD-NLETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLR 120
            D  L+TPPP+KAQIVGWPPVQSFRRNSLQ KKT A ATAA ES+ NYVKVSMDGAPYLR
Sbjct: 61  SDATLQTPPPTKAQIVGWPPVQSFRRNSLQSKKT-AVATAAQESSGNYVKVSMDGAPYLR 120

Query: 121 KIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180
           KIDL LYKGY ELLQ L+DMFKF VGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM
Sbjct: 121 KIDLCLYKGYPELLQTLQDMFKFRVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180

Query: 181 FMSSCKRLRIMKGSEAKGLGCVA 199
           FMSSCKRLRIMKGSEAKGLGCVA
Sbjct: 181 FMSSCKRLRIMKGSEAKGLGCVA 202

[Close]

BLAST of CmoCh06G013570 vs. ExPASy TrEMBL
Match: A0A5A7U4N6 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001020 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.9e-89
Identity = 177/203 (87.19%), Postives = 184/203 (90.64%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVDGNK--QEPQSLRIINNKRP-LLPESNQSSSASNISVSD 60
           MAFE GLNLDATELRLGPPGVD NK  ++PQS+RI  NKRP LLPESNQSSS SN+SVS 
Sbjct: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSIRI--NKRPLLLPESNQSSSGSNVSVSS 60

Query: 61  D-NLETPPPSKAQIVGWPPVQSFRRNSLQGKK-TAAAATAAGESTANYVKVSMDGAPYLR 120
           D  L+TPPPSKAQIVGWPPVQSFRRNSLQGKK T AA TAA ES+ N+VKVSMDGAPYLR
Sbjct: 61  DATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTVAATTAALESSGNFVKVSMDGAPYLR 120

Query: 121 KIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180
           KIDLSLYKGY ELLQ LEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM
Sbjct: 121 KIDLSLYKGYPELLQTLEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180

Query: 181 FMSSCKRLRIMKGSEAKGLGCVA 199
           F SSCKRLRIMKGSEAKGLGCVA
Sbjct: 181 FTSSCKRLRIMKGSEAKGLGCVA 201

[Close]

BLAST of CmoCh06G013570 vs. ExPASy TrEMBL
Match: A0A1S3AXE9 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483650 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.9e-89
Identity = 177/203 (87.19%), Postives = 184/203 (90.64%), Query Frame = 0


Query: 1   MAFEAGLNLDATELRLGPPGVDGNK--QEPQSLRIINNKRP-LLPESNQSSSASNISVSD 60
           MAFE GLNLDATELRLGPPGVD NK  ++PQS+RI  NKRP LLPESNQSSS SN+SVS 
Sbjct: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSIRI--NKRPLLLPESNQSSSGSNVSVSS 60

Query: 61  D-NLETPPPSKAQIVGWPPVQSFRRNSLQGKK-TAAAATAAGESTANYVKVSMDGAPYLR 120
           D  L+TPPPSKAQIVGWPPVQSFRRNSLQGKK T AA TAA ES+ N+VKVSMDGAPYLR
Sbjct: 61  DATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTVAATTAALESSGNFVKVSMDGAPYLR 120

Query: 121 KIDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180
           KIDLSLYKGY ELLQ LEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM
Sbjct: 121 KIDLSLYKGYPELLQTLEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEM 180

Query: 181 FMSSCKRLRIMKGSEAKGLGCVA 199
           F SSCKRLRIMKGSEAKGLGCVA
Sbjct: 181 FTSSCKRLRIMKGSEAKGLGCVA 201

[Close]

BLAST of CmoCh06G013570 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 232.6 bits (592), Expect = 2.7e-61
Identity = 122/192 (63.54%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDG--NKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPP 66
           +NL  TELRLG PG D     +E  S    NNKR L      + +   I  S    ET P
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVL-----STDTEKEIESSSRKTETSP 64

Query: 67  PSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKG 126
           P KAQIVGWPPV+S+R+N++Q KK      +  E    YVKVSMDGAPYLRKIDLS YKG
Sbjct: 65  PRKAQIVGWPPVRSYRKNNIQSKKN----ESEHEGQGIYVKVSMDGAPYLRKIDLSCYKG 124

Query: 127 YTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLR 186
           Y+ELL+ALE MFKF+VGEY ER+GYKGS++VPTYEDKDGDWML+GDVPWEMF+ +CKRLR
Sbjct: 125 YSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLR 184

Query: 187 IMKGSEAKGLGC 197
           IMKGSEAKGLGC
Sbjct: 185 IMKGSEAKGLGC 187

[Close]

BLAST of CmoCh06G013570 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-60
Identity = 120/190 (63.16%), Postives = 143/190 (75.26%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPPPS 66
           +NL ATELRLG PG +      +S     NKR +LPE+ +    S         ET  P 
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKS-----NKR-VLPEATEKEIEST-----GKTETASPP 70

Query: 67  KAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKGYT 126
           KAQIVGWPPV+S+R+N++Q KK+ +      E   NYVKVSMDGAPYLRKIDL++YK Y 
Sbjct: 71  KAQIVGWPPVRSYRKNNVQTKKSES------EGQGNYVKVSMDGAPYLRKIDLTMYKQYP 130

Query: 127 ELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIM 186
           EL+++LE+MFKF+VGEY EREGYKGS++VPTYEDKDGDWMLVGDVPWEMF+SSCKRLRIM
Sbjct: 131 ELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIM 183

Query: 187 KGSEAKGLGC 197
           KGSE KGLGC
Sbjct: 191 KGSEVKGLGC 183

[Close]

BLAST of CmoCh06G013570 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-54
Identity = 113/186 (60.75%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 6   GLNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPESNQSSSASNISVSDDNLETPPP 65
           GLNL  TELRLG PG    +Q   S    NNKR    ++N S+  S           PPP
Sbjct: 6   GLNLKDTELRLGLPGAQEEQQLELSCVRSNNKR----KNNDSTEES----------APPP 65

Query: 66  SKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRKIDLSLYKGY 125
           +K QIVGWPPV+S R+N+                  +YVKVSMDGAPYLRKIDL +YK Y
Sbjct: 66  AKTQIVGWPPVRSNRKNN-------------NNKNVSYVKVSMDGAPYLRKIDLKMYKNY 125

Query: 126 TELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRI 185
            ELL+ALE+MFKFTVGEYSEREGYKGS +VPTYEDKDGDWMLVGDVPW+MF SSC++LRI
Sbjct: 126 PELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRI 164

Query: 186 MKGSEA 192
           MKGSEA
Sbjct: 186 MKGSEA 164

[Close]

BLAST of CmoCh06G013570 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-51
Identity = 112/198 (56.57%), Postives = 131/198 (66.16%), Query Frame = 0


Query: 1   MAFEA--GLNLDATELRLGPPGVDGNKQEPQSLRII--NNKRPLLPESNQSSSASNISVS 60
           MA+E    LNL  TEL LG PG     +E Q +  +  NNKR L  E+            
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKR-LFEETR----------- 60

Query: 61  DDNLETPPPSKAQIVGWPPVQSFRRNSLQGKKTAAAATAAGESTANYVKVSMDGAPYLRK 120
            D  E+ PP+K QIVGWPPV+S R+N+               ++ +YVKVSMDGAPYLRK
Sbjct: 61  -DEEESTPPTKTQIVGWPPVRSSRKNN---------------NSVSYVKVSMDGAPYLRK 120

Query: 121 IDLSLYKGYTELLQALEDMFKFTVGEYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWEMF 180
           IDL  YK Y ELL+ALE+MFK  +GEY EREGYKGS +VPTYEDKDGDWMLVGDVPW+MF
Sbjct: 121 IDLKTYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMF 170

Query: 181 MSSCKRLRIMKGSEAKGL 195
            SSCKRLRIMKGS+A  L
Sbjct: 181 SSSCKRLRIMKGSDAPAL 170

[Close]

BLAST of CmoCh06G013570 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 178.3 bits (451), Expect = 5.9e-45
Identity = 115/229 (50.22%), Postives = 141/229 (61.57%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDGNKQEPQSLRIINNKRPLLPES-----NQSSSASNISVSDDNLE 66
           +N +ATELRLG PG  GN     + +  NN +    E+     N SS+A + SVS  +LE
Sbjct: 2   INFEATELRLGLPG--GNHGGEMAGK--NNGKRGFSETVDLKLNLSSTAMD-SVSKVDLE 61

Query: 67  ------TPPPSKAQIVGWPPVQSFRRNSLQGKK----------------TAAAATAAGES 126
                   PP+KAQ+VGWPPV+SFR+N + G+K                + A ++A+  +
Sbjct: 62  NMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACA 121

Query: 127 TANYVKVSMDGAPYLRKIDLSLYKGYTELLQALEDMF-KFTVGEYSEREGYK-------- 186
           T  YVKVSMDGAPYLRKIDL LYK Y +L  AL  MF  FT+G Y   +G K        
Sbjct: 122 TVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGP-QGMKDFMNESKL 181

Query: 187 -----GSEYVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGL 195
                GS+YVPTYEDKDGDWMLVGDVPWEMF+ SCKR+RIMKGSEA GL
Sbjct: 182 IDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

The following BLAST results are available for this feature:

BLAST of CmoCh06G013570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32294	1.5e-61	61.08	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]
Q38822	3.7e-60	63.54	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
O24543	4.9e-60	60.19	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]
O24542	1.9e-59	61.03	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
P33077	7.0e-59	63.16	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]

BLAST of CmoCh06G013570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRY1	3.2e-107	100.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111447904 PE=3 SV=1	[more]
A0A6J1IAA9	9.8e-104	96.97	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111473119 PE=3 SV=1	[more]
A0A6J1IXI2	6.1e-90	86.21	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480070 PE=3 SV=1	[more]
A0A5A7U4N6	8.9e-89	87.19	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AXE9	8.9e-89	87.19	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483650 PE=3 SV=1	[more]

BLAST of CmoCh06G013570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04240.1	2.7e-61	63.54	AUX/IAA transcriptional regulator family protein	[more]
AT5G43700.1	5.0e-60	63.16	AUX/IAA transcriptional regulator family protein	[more]
AT4G14560.1	1.4e-54	60.75	indole-3-acetic acid inducible	[more]
AT3G23030.1	4.2e-51	56.57	indole-3-acetic acid inducible 2	[more]
AT3G04730.1	5.9e-45	50.22	indoleacetic acid-induced protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 96..198 e-value: 9.4E-47 score: 159.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..63
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..196
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 96..187
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 49..195 e-value: 4.1E-60 score: 203.6
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..196
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 101..188 score: 28.429926

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013570.1	CmoCh06G013570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding