CmoCh06G013550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G013550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr06: 10032032 .. 10033616 (-)
RNA-Seq Expression	CmoCh06G013550
Synteny	CmoCh06G013550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATGTGATTAATGGTTGACTAATTGAAACCATGTTACAGCTGCCTCCCTCCCTTCAAATCCAACCACAAGTTGGTCAAATAAAAATCACTCCAAAATCAACGTCCTATGTTTCTCCACGTGGCGAAATCCCATTAGAGAGGACCTTGATAAGACATGCACATGCAACGCACCTTAATATTATTCTGCTCCATATATTATTTCTCTCCCACTCAAAATTGCAAAATTATATCACAACACACAGCGCTCTGAGCAATTTTTCATTGAGGTTTGCCGGAAAATGGTCAACATGCTTGAAACTGATCTCTGTCTCGGGCTTCCGGGCGGCGGAGGCGGCGGCGGAGGTGGAGAGCCGGAGACTCCAAAAGGTAATGGAAAAAGAGGATTCTCTGAGACGGTTGATCTGAAACTCAATATCCAATCTAAGCCTGTGGTAACCGTCGATCTGAGTACCACACAGAACATGAAGAGTACTGATTCAGAGGATCTTAGCTCCAAGGATCCTGCAAAGCCACCTGCCAAGTAATTAGCTTCCCTTCCCGTCCCTTTACTCGAAACCTTGTTTAAGTTGATGGGTTACGATATTTTTTTGTAATTATTTAGGGCACAAGTTGTGGGGTGGCCACCAGTCCGTTCCTACCGAAAGAACGCGATGTCTCAAAAGAATCCCGATGCTGGAGAAAAGGGTAGCGGCTCGGCTATGTTCGTCAAAGTTTGTATGGATGGTGCACCGTATCTACGAAAGGTGGACCTAAAGACGTACAAAAGCTACCAAGAGCTCTCGAACGCCTTGGCTAAGATGTTCAGCTCCTTCACCATGGCGGGTTAGTTAACAATCGTTTTAAATACAAATTTGTAGAATAAATTGGGTTAGATCTAGAACACAAAGTGGCAAATTACATCGAATTAATTAATTAAATTTTACGGGTTTTAATGTAAAGGCGAGTATGGGGCCCAAGGAATGATAGATTTCATGAACGAAAGCAAGTTGATGGATCTTCTAAACAGCTCTGAATACGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGAGATGTCCCATGGGAGTAAGTTGCTTATCTCTGCGGCCAATCAACCATTACATCCGTTAATCTAATTATGTTTTGTACTTATAGGATGTTCGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCGGAAGCTATCGGGCTCGGTATGTATAAAAAGTTTATAGTACATAAGAAAGAAAGTTTGCATTTAAGCCCCTAAAGTAAGTGGGAATTACTTTATGCAGCCCCAAGAGCGATGGAAAAATGCAAAAGCAGAAGCTGAAAGAGGAGTTGATTGCAATATTTATGTTTTTTTTTTTTTAAATTAAAATTTAAATTTTGAATGTTGTGATTGGTAAATAGATATTAAAAGAGATTTGGGAGACTAATTAATTAATTTGTAATAGGAAACAACAAAATAAACTCTCTCTCTCTCTATATCTCTCTCTATCTCTCTCCTATCCTGTCTGTCTGGCTGTCTGTCTGTTTGTTTGTTTAATTACAAAAAAAAAAAAACAATTATAATGGGTTTTGCTTTTAT

mRNA sequence

TGTATGTGATTAATGGTTGACTAATTGAAACCATGTTACAGCTGCCTCCCTCCCTTCAAATCCAACCACAAGTTGGTCAAATAAAAATCACTCCAAAATCAACGTCCTATGTTTCTCCACGTGGCGAAATCCCATTAGAGAGGACCTTGATAAGACATGCACATGCAACGCACCTTAATATTATTCTGCTCCATATATTATTTCTCTCCCACTCAAAATTGCAAAATTATATCACAACACACAGCGCTCTGAGCAATTTTTCATTGAGGTTTGCCGGAAAATGGTCAACATGCTTGAAACTGATCTCTGTCTCGGGCTTCCGGGCGGCGGAGGCGGCGGCGGAGGTGGAGAGCCGGAGACTCCAAAAGGTAATGGAAAAAGAGGATTCTCTGAGACGGTTGATCTGAAACTCAATATCCAATCTAAGCCTGTGGTAACCGTCGATCTGAGTACCACACAGAACATGAAGAGTACTGATTCAGAGGATCTTAGCTCCAAGGATCCTGCAAAGCCACCTGCCAAGGCACAAGTTGTGGGGTGGCCACCAGTCCGTTCCTACCGAAAGAACGCGATGTCTCAAAAGAATCCCGATGCTGGAGAAAAGGGTAGCGGCTCGGCTATGTTCGTCAAAGTTTGTATGGATGGTGCACCGTATCTACGAAAGGTGGACCTAAAGACGTACAAAAGCTACCAAGAGCTCTCGAACGCCTTGGCTAAGATGTTCAGCTCCTTCACCATGGCGGGCGAGTATGGGGCCCAAGGAATGATAGATTTCATGAACGAAAGCAAGTTGATGGATCTTCTAAACAGCTCTGAATACGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCGGAAGCTATCGGGCTCGCCCCAAGAGCGATGGAAAAATGCAAAAGCAGAAGCTGAAAGAGGAGTTGATTGCAATATTTATGTTTTTTTTTTTTTAAATTAAAATTTAAATTTTGAATGTTGTGATTGGTAAATAGATATTAAAAGAGATTTGGGAGACTAATTAATTAATTTGTAATAGGAAACAACAAAATAAACTCTCTCTCTCTCTATATCTCTCTCTATCTCTCTCCTATCCTGTCTGTCTGGCTGTCTGTCTGTTTGTTTGTTTAATTACAAAAAAAAAAAAACAATTATAATGGGTTTTGCTTTTAT

Coding sequence (CDS)

ATGGTCAACATGCTTGAAACTGATCTCTGTCTCGGGCTTCCGGGCGGCGGAGGCGGCGGCGGAGGTGGAGAGCCGGAGACTCCAAAAGGTAATGGAAAAAGAGGATTCTCTGAGACGGTTGATCTGAAACTCAATATCCAATCTAAGCCTGTGGTAACCGTCGATCTGAGTACCACACAGAACATGAAGAGTACTGATTCAGAGGATCTTAGCTCCAAGGATCCTGCAAAGCCACCTGCCAAGGCACAAGTTGTGGGGTGGCCACCAGTCCGTTCCTACCGAAAGAACGCGATGTCTCAAAAGAATCCCGATGCTGGAGAAAAGGGTAGCGGCTCGGCTATGTTCGTCAAAGTTTGTATGGATGGTGCACCGTATCTACGAAAGGTGGACCTAAAGACGTACAAAAGCTACCAAGAGCTCTCGAACGCCTTGGCTAAGATGTTCAGCTCCTTCACCATGGCGGGCGAGTATGGGGCCCAAGGAATGATAGATTTCATGAACGAAAGCAAGTTGATGGATCTTCTAAACAGCTCTGAATACGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCGGAAGCTATCGGGCTCGCCCCAAGAGCGATGGAAAAATGCAAAAGCAGAAGCTGA

Protein sequence

MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQNMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS

Homology

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BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot
Match: Q38832 (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2)

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-81
Identity = 167/238 (70.17%), Postives = 187/238 (78.57%), Query Frame = 0


Query: 2   VNMLETDLCLGLPGGGGGGGGGEPETPKGNG---KRGFSETVDLKLNIQSKPVVTVDLST 61
           +N+ ET+LCLGLP     GG    E+P  +G   KRGFSETVDLKLN+QS     VDL+T
Sbjct: 1   MNLKETELCLGLP-----GGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNT 60

Query: 62  TQNMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAM-SQKNPDAGE---KGSGSAM 121
                    E    KDP+KPPAKAQVVGWPPVR+YRKN M +QK+ +A E    G G+  
Sbjct: 61  ----NGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVA 120

Query: 122 FVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDL 181
           FVKV MDGAPYLRKVDLK Y SY++LS+ALAKMFSSFTM G YGAQGMIDFMNESK+MDL
Sbjct: 121 FVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTM-GSYGAQGMIDFMNESKVMDL 180

Query: 182 LNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           LNSSEYVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRAMEK K+RS
Sbjct: 181 LNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

[Close]

BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot
Match: Q38825 (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.9e-80
Identity = 163/245 (66.53%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           ++N+  T+LCLGLP  GG      P       KRGFSETVDL LN+QS    +VDL   +
Sbjct: 5   LMNLKATELCLGLP--GGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDL---K 64

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEK------------ 120
           N+ +   E  + KDP+KPPAKAQVVGWPPVR+YRKN M+Q+   +G +            
Sbjct: 65  NVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG 124

Query: 121 GSGSAMFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNE 180
           G+  A  VKV MDGAPYLRKVDLK YKSYQ+LS+ALAKMFSSFTM G YGAQGMIDFMNE
Sbjct: 125 GAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM-GNYGAQGMIDFMNE 184

Query: 181 SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEK- 233
           SKLM+LLNSSEYVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEA+GLAPRAMEK 
Sbjct: 185 SKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKY 243

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BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot
Match: P93830 (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-79
Identity = 155/233 (66.52%), Postives = 182/233 (78.11%), Query Frame = 0


Query: 2   VNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQN 61
           +N+ ET+LCLGLP       GG+   P    KRGFSETVDLKLN+ ++P    + STT +
Sbjct: 7   LNLRETELCLGLP-------GGDTVAPVTGNKRGFSETVDLKLNLNNEP-ANKEGSTTHD 66

Query: 62  MKSTDSEDLSS--KDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVC 121
           + + DS++ S+  KDPAKPPAKAQVVGWPPVRSYRKN M      +G  G  +A FVKV 
Sbjct: 67  VVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSG--GPEAAAFVKVS 126

Query: 122 MDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSE 181
           MDGAPYLRK+DL+ YKSY ELSNAL+ MFSSFTM    G +GMIDFMNE KLMDL+NS +
Sbjct: 127 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 186

Query: 182 YVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           YVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAPRAMEKCKSR+
Sbjct: 187 YVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229

[Close]

BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot
Match: O24407 (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-77
Identity = 160/250 (64.00%), Postives = 182/250 (72.80%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           M+N   T+L LGLPGG  GG        K NGKRGFSETVDLKLN+ S  + +V     +
Sbjct: 1   MINFEATELRLGLPGGNHGG----EMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLE 60

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAG------EKGSGSA- 120
           NMK         +   KPPAKAQVVGWPPVRS+RKN MS + P  G      +K SGS+ 
Sbjct: 61  NMK---------EKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSG 120

Query: 121 -----------MFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGM 180
                       +VKV MDGAPYLRK+DLK YK+YQ+LSNAL+KMFSSFT+ G YG QGM
Sbjct: 121 ATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI-GNYGPQGM 180

Query: 181 IDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAP 233
            DFMNESKL+DLLN S+YVPTYEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGLAP
Sbjct: 181 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAP 236

[Close]

BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot
Match: P0C132 (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.3e-66
Identity = 154/270 (57.04%), Postives = 177/270 (65.56%), Query Frame = 0


Query: 7   TDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVT------------- 66
           T+L LGLPGGGG G          +GKRGF+ET+DLKL ++                   
Sbjct: 10  TELRLGLPGGGGDGDAAAAAARSSSGKRGFAETIDLKLKLEPAAAAVDDDDDKEEAAADD 69

Query: 67  ----VDLSTTQN-------------MKSTDSED---LSSKDPAKPPA-KAQVVGWPPVRS 126
               VD+    N             MK + S+     ++ DP KP A KAQVVGWPPVRS
Sbjct: 70  REKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAPKAQVVGWPPVRS 129

Query: 127 YRKNAM---SQKNPDA----GEK---GSGSAMFVKVCMDGAPYLRKVDLKTYKSYQELSN 186
           YRKN +   + K  DA    G+K   G+ +A FVKV MDGAPYLRKVDLK YKSY ELS 
Sbjct: 130 YRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSK 189

Query: 187 ALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMF 233
           AL KMFSSFT+ G  G+ G ++ MNESK+ DLLN SEYVPTYEDKDGDWMLVGDVPWEMF
Sbjct: 190 ALEKMFSSFTI-GNCGSHG-VNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMF 249

[Close]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL
Match: A0A0A0LA18 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G143570 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.9e-109
Identity = 209/236 (88.56%), Postives = 214/236 (90.68%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           MVNMLETDLCLGLP     GGG EPETPK NGKRGFSETVDLKLNIQSKP VTVDL+   
Sbjct: 7   MVNMLETDLCLGLP-----GGGAEPETPKANGKRGFSETVDLKLNIQSKPGVTVDLTPQN 66

Query: 61  NMKSTDSEDL-SSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKG---SGSAMFV 120
           N  STD E L +SKDPAKPPAKAQVVGWPPVRSYRKNAMSQK+ +AGEKG    GSAMFV
Sbjct: 67  NDTSTDEESLIASKDPAKPPAKAQVVGWPPVRSYRKNAMSQKSSEAGEKGGSSGGSAMFV 126

Query: 121 KVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLN 180
           KVCMDGAPYLRKVDLK YKSYQELSNALAKMFSSFTMAG+YGAQGMIDFMNESKLMDLLN
Sbjct: 127 KVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFMNESKLMDLLN 186

Query: 181 SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS
Sbjct: 187 SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 237

[Close]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL
Match: A0A1S3AWR5 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483649 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 208/236 (88.14%), Postives = 215/236 (91.10%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           MVNMLETDLCLGLP     GGG EPETPK NGKRGFSETVDLKLNIQSK  VTVDL+   
Sbjct: 7   MVNMLETDLCLGLP-----GGGAEPETPKANGKRGFSETVDLKLNIQSKTGVTVDLTPKN 66

Query: 61  NMKSTDSEDL-SSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKG---SGSAMFV 120
           +  STD E+L +SKDPAKPPAKAQVVGWPPVRSYRKNAMSQK+PD+GEKG    GSAMFV
Sbjct: 67  SDTSTDEENLITSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKSPDSGEKGGSSGGSAMFV 126

Query: 121 KVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLN 180
           KVCMDGAPYLRKVDLK YKSYQELSNALAKMFSSFTMAG+YGAQGMIDFMNESKLMDLLN
Sbjct: 127 KVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFMNESKLMDLLN 186

Query: 181 SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS
Sbjct: 187 SSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 237

[Close]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL
Match: A0A6J1F9R0 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111442089 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ
Sbjct: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVCM 120
           NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVCM
Sbjct: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVCM 120

Query: 121 DGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSEY 180
           DGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSEY
Sbjct: 121 DGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSEY 180

Query: 181 VPTYEDKDGDWMLVGDVPWE 201
           VPTYEDKDGDWMLVGDVPWE
Sbjct: 181 VPTYEDKDGDWMLVGDVPWE 200

[Close]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL
Match: A0A6J1E8C6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111431770 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 7.2e-106
Identity = 205/238 (86.13%), Postives = 213/238 (89.50%), Query Frame = 0


Query: 4   MLETDLCLGLP----GGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTT 63
           MLETDLCLGLP    GGGGGGGGGEPETPK NGKRGFSETVDLKLNIQS+P+ TVDL T 
Sbjct: 1   MLETDLCLGLPGGGGGGGGGGGGGEPETPKANGKRGFSETVDLKLNIQSEPLATVDL-TP 60

Query: 64  QNMK-----STDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAM 123
           QNMK     STD + L+SKDPAKPPAKAQ VGWPPVRSYRKN M+QK+PD     SGSAM
Sbjct: 61  QNMKTNNNTSTDEKSLTSKDPAKPPAKAQAVGWPPVRSYRKNVMAQKSPD-----SGSAM 120

Query: 124 FVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDL 183
           FVKVCMDGAPYLRKVDLK YKSYQELSNALAKMFSSFTMAG+YGAQGMIDF+NESKLMDL
Sbjct: 121 FVKVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFINESKLMDL 180

Query: 184 LNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           LNS EYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRI KGSEAIGLAPRAMEKCKSRS
Sbjct: 181 LNSFEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRITKGSEAIGLAPRAMEKCKSRS 232

[Close]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL
Match: A0A6J1J0A2 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480069 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.6e-105
Identity = 206/235 (87.66%), Postives = 212/235 (90.21%), Query Frame = 0


Query: 4   MLETDLCLGLP-GGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQNM 63
           MLETDLCLGLP GGGGGGGGGEPETPK NGKRGFSETVDLKLNIQS+P+ TVDL T QNM
Sbjct: 1   MLETDLCLGLPGGGGGGGGGGEPETPKANGKRGFSETVDLKLNIQSEPLATVDL-TPQNM 60

Query: 64  K----STDSED-LSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVK 123
           K    STD +  LSSKDPAKPPAKAQ VGWPPVRSYRKN M+QKN D      GSAMFVK
Sbjct: 61  KNNNTSTDEKSLLSSKDPAKPPAKAQAVGWPPVRSYRKNVMAQKNSD-----GGSAMFVK 120

Query: 124 VCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNS 183
           VCMDGAPYLRKVDLK YKSYQELSNALAKMFSSFTMAG+YGAQGMIDF+NESKLMDLLNS
Sbjct: 121 VCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFINESKLMDLLNS 180

Query: 184 SEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           SEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRI KGSEAIGLAPRAMEKCKSRS
Sbjct: 181 SEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRITKGSEAIGLAPRAMEKCKSRS 229

[Close]

BLAST of CmoCh06G013550 vs. TAIR 10
Match: AT4G14550.1 (indole-3-acetic acid inducible 14 )

HSP 1 Score: 302.4 bits (773), Expect = 3.2e-82
Identity = 167/238 (70.17%), Postives = 187/238 (78.57%), Query Frame = 0


Query: 2   VNMLETDLCLGLPGGGGGGGGGEPETPKGNG---KRGFSETVDLKLNIQSKPVVTVDLST 61
           +N+ ET+LCLGLP     GG    E+P  +G   KRGFSETVDLKLN+QS     VDL+T
Sbjct: 1   MNLKETELCLGLP-----GGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNT 60

Query: 62  TQNMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAM-SQKNPDAGE---KGSGSAM 121
                    E    KDP+KPPAKAQVVGWPPVR+YRKN M +QK+ +A E    G G+  
Sbjct: 61  ----NGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVA 120

Query: 122 FVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDL 181
           FVKV MDGAPYLRKVDLK Y SY++LS+ALAKMFSSFTM G YGAQGMIDFMNESK+MDL
Sbjct: 121 FVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTM-GSYGAQGMIDFMNESKVMDL 180

Query: 182 LNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           LNSSEYVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRAMEK K+RS
Sbjct: 181 LNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

[Close]

BLAST of CmoCh06G013550 vs. TAIR 10
Match: AT3G23050.1 (indole-3-acetic acid 7 )

HSP 1 Score: 299.7 bits (766), Expect = 2.1e-81
Identity = 163/245 (66.53%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           ++N+  T+LCLGLP  GG      P       KRGFSETVDL LN+QS    +VDL   +
Sbjct: 5   LMNLKATELCLGLP--GGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDL---K 64

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEK------------ 120
           N+ +   E  + KDP+KPPAKAQVVGWPPVR+YRKN M+Q+   +G +            
Sbjct: 65  NVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG 124

Query: 121 GSGSAMFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNE 180
           G+  A  VKV MDGAPYLRKVDLK YKSYQ+LS+ALAKMFSSFTM G YGAQGMIDFMNE
Sbjct: 125 GAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM-GNYGAQGMIDFMNE 184

Query: 181 SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEK- 233
           SKLM+LLNSSEYVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEA+GLAPRAMEK 
Sbjct: 185 SKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKY 243

[Close]

BLAST of CmoCh06G013550 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-80
Identity = 155/233 (66.52%), Postives = 182/233 (78.11%), Query Frame = 0


Query: 2   VNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQN 61
           +N+ ET+LCLGLP       GG+   P    KRGFSETVDLKLN+ ++P    + STT +
Sbjct: 7   LNLRETELCLGLP-------GGDTVAPVTGNKRGFSETVDLKLNLNNEP-ANKEGSTTHD 66

Query: 62  MKSTDSEDLSS--KDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEKGSGSAMFVKVC 121
           + + DS++ S+  KDPAKPPAKAQVVGWPPVRSYRKN M      +G  G  +A FVKV 
Sbjct: 67  VVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSG--GPEAAAFVKVS 126

Query: 122 MDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNESKLMDLLNSSE 181
           MDGAPYLRK+DL+ YKSY ELSNAL+ MFSSFTM    G +GMIDFMNE KLMDL+NS +
Sbjct: 127 MDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD 186

Query: 182 YVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 233
           YVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAPRAMEKCKSR+
Sbjct: 187 YVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229

[Close]

BLAST of CmoCh06G013550 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 291.2 bits (744), Expect = 7.4e-79
Identity = 160/250 (64.00%), Postives = 182/250 (72.80%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           M+N   T+L LGLPGG  GG        K NGKRGFSETVDLKLN+ S  + +V     +
Sbjct: 1   MINFEATELRLGLPGGNHGG----EMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLE 60

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAG------EKGSGSA- 120
           NMK         +   KPPAKAQVVGWPPVRS+RKN MS + P  G      +K SGS+ 
Sbjct: 61  NMK---------EKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSG 120

Query: 121 -----------MFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGM 180
                       +VKV MDGAPYLRK+DLK YK+YQ+LSNAL+KMFSSFT+ G YG QGM
Sbjct: 121 ATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI-GNYGPQGM 180

Query: 181 IDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAP 233
            DFMNESKL+DLLN S+YVPTYEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGLAP
Sbjct: 181 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAP 236

[Close]

BLAST of CmoCh06G013550 vs. TAIR 10
Match: AT3G23050.2 (indole-3-acetic acid 7 )

HSP 1 Score: 245.0 bits (624), Expect = 6.1e-65
Identity = 134/212 (63.21%), Postives = 155/212 (73.11%), Query Frame = 0


Query: 1   MVNMLETDLCLGLPGGGGGGGGGEPETPKGNGKRGFSETVDLKLNIQSKPVVTVDLSTTQ 60
           ++N+  T+LCLGLP  GG      P       KRGFSETVDL LN+QS    +VDL   +
Sbjct: 5   LMNLKATELCLGLP--GGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDL---K 64

Query: 61  NMKSTDSEDLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDAGEK------------ 120
           N+ +   E  + KDP+KPPAKAQVVGWPPVR+YRKN M+Q+   +G +            
Sbjct: 65  NVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGG 124

Query: 121 GSGSAMFVKVCMDGAPYLRKVDLKTYKSYQELSNALAKMFSSFTMAGEYGAQGMIDFMNE 180
           G+  A  VKV MDGAPYLRKVDLK YKSYQ+LS+ALAKMFSSFTM G YGAQGMIDFMNE
Sbjct: 125 GAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM-GNYGAQGMIDFMNE 184

Query: 181 SKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWE 201
           SKLM+LLNSSEYVP+YEDKDGDWMLVGDVPWE
Sbjct: 185 SKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210

The following BLAST results are available for this feature:

BLAST of CmoCh06G013550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38832	4.5e-81	70.17	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=...	[more]
Q38825	2.9e-80	66.53	Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1	[more]
P93830	1.4e-79	66.52	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=...	[more]
O24407	1.0e-77	64.00	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=...	[more]
P0C132	5.3e-66	57.04	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30...	[more]

BLAST of CmoCh06G013550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA18	6.9e-109	88.56	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G143570 PE=3 SV=1	[more]
A0A1S3AWR5	1.5e-108	88.14	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483649 PE=3 SV=1	[more]
A0A6J1F9R0	2.0e-108	100.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111442089 PE=3 SV=1	[more]
A0A6J1E8C6	7.2e-106	86.13	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111431770 PE=3 SV=1	[more]
A0A6J1J0A2	3.6e-105	87.66	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480069 PE=3 SV=1	[more]

BLAST of CmoCh06G013550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14550.1	3.2e-82	70.17	indole-3-acetic acid inducible 14	[more]
AT3G23050.1	2.1e-81	66.53	indole-3-acetic acid 7	[more]
AT1G04250.1	1.0e-80	66.52	AUX/IAA transcriptional regulator family protein	[more]
AT3G04730.1	7.4e-79	64.00	indoleacetic acid-induced protein 16	[more]
AT3G23050.2	6.1e-65	63.21	indole-3-acetic acid 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 108..226 e-value: 9.3E-45 score: 152.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..39
None	No IPR available	PANTHER	PTHR31734:SF89	AUXIN-RESPONSIVE PROTEIN IAA14	coord: 2..225
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 109..213
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 30..223 e-value: 3.4E-80 score: 269.4
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 2..225
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 113..214 score: 24.773575

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013550.1	CmoCh06G013550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding