CmoCh06G013440 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G013440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 9971845 .. 9972360 (+)
RNA-Seq Expression	CmoCh06G013440
Synteny	CmoCh06G013440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGAGCGAGAGCAAAACCGGCGGCGGCGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGGGCGGCGAGGACAGGCTTGAAGATATGAACCATGTGGAGTATGCGGTCTCTAGCGGCGGATTTGGAGGCGGCGGATTGAGCCCAGGGAAGGTGGAAGCCATTGGAGAAGAAGCGGCCATGGGAGGTGGTGATGAGAACGGAACCGGGCGTGGCTTGGGAGTTGATTTGGGTCAGAAGAGAGAGGAAGGAGGAAATGAATGGTGGTCCGATCCAGTGCTCGTCGTCGCCGGTGAGGGTGATGATGAAGAGATCGCCACGCCTCTCAAGTGTGCACATGGTTCTTCAATAAGCTGCTTCAATTCGTGTTGTGCTCTTGATAAATAACAAGGATGAGTAATGGGCACGCATTTCTATGCACTAATAAATATTTTTTAAAATAATTTTTTAAACAGTCAATCAACTCTAACAAAAAGTAAGATCCATATTACTACCTAA

mRNA sequence

ATGGCTAAGAGCGAGAGCAAAACCGGCGGCGGCGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGGGCGGCGAGGACAGGCTTGAAGATATGAACCATGTGGAGTATGCGGTCTCTAGCGGCGGATTTGGAGGCGGCGGATTGAGCCCAGGGAAGGTGGAAGCCATTGGAGAAGAAGCGGCCATGGGAGGTGGTGATGAGAACGGAACCGGGCGTGGCTTGGGAGTTGATTTGGGTCAGAAGAGAGAGGAAGGAGGAAATGAATGGTGGTCCGATCCAGTGCTCGTCGTCGCCGGTGAGGGTGATGATGAAGAGATCGCCACGCCTCTCAATCAATCAACTCTAACAAAAAGTAAGATCCATATTACTACCTAA

Coding sequence (CDS)

ATGGCTAAGAGCGAGAGCAAAACCGGCGGCGGCGGCATGGCCGGAGACAGCGGCGATGGTGGGCATGGGGAGAGAGAGAAGGGCGGCGAGGACAGGCTTGAAGATATGAACCATGTGGAGTATGCGGTCTCTAGCGGCGGATTTGGAGGCGGCGGATTGAGCCCAGGGAAGGTGGAAGCCATTGGAGAAGAAGCGGCCATGGGAGGTGGTGATGAGAACGGAACCGGGCGTGGCTTGGGAGTTGATTTGGGTCAGAAGAGAGAGGAAGGAGGAAATGAATGGTGGTCCGATCCAGTGCTCGTCGTCGCCGGTGAGGGTGATGATGAAGAGATCGCCACGCCTCTCAATCAATCAACTCTAACAAAAAGTAAGATCCATATTACTACCTAA

Protein sequence

MAKSESKTGGGGMAGDSGDGGHGEREKGGEDRLEDMNHVEYAVSSGGFGGGGLSPGKVEAIGEEAAMGGGDENGTGRGLGVDLGQKREEGGNEWWSDPVLVVAGEGDDEEIATPLNQSTLTKSKIHITT

Homology

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BLAST of CmoCh06G013440 vs. ExPASy TrEMBL
Match: A0A0S3SUR8 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G357900 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 5   ESKTGGGGMAGDSGDGGHGEREKGGEDRLEDMNHVEYAVSSGGFGGGGLSPGKVEAIGEE 64
           E+ +  G + GDSGDGG G+ E+ GED  + + H   A +     G    P +VE I EE
Sbjct: 122 ENSSRRGSVTGDSGDGGDGKGEECGEDGAKGVRHSAEADAGSLRVGSCTRPAEVEPIAEE 181

Query: 65  AAMGGGDENGTGRGLGVDLGQKREEGGNEWWSDPVLVVAGEG 107
           +A+GGGDE G G  LGVDLG+  EEGG E   + VL VA  G
Sbjct: 182 SALGGGDEGGGGGCLGVDLGESGEEGGEECGVETVLFVAFTG 223

The following BLAST results are available for this feature:

BLAST of CmoCh06G013440 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G013440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SUR8	6.5e-08	46.08	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]

BLAST of CmoCh06G013440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013440.1	CmoCh06G013440.1	mRNA