CmoCh06G013150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G013150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionEmbryo sac development arrest protein
LocationCmo_Chr06: 9837360 .. 9837737 (+)
RNA-Seq ExpressionCmoCh06G013150
SyntenyCmoCh06G013150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGGTACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

mRNA sequence

ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGGTACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

Coding sequence (CDS)

ATGAGTTTCCATTGCCACAGCCGTGGGCTGTTATCAGCTGGGCCGTCAAGAAAGCGGAAGGAGCCGTCGGCTCTTAAAGCCGGTGAGCAGCCAATTACGTCGAACCGGCTTCTGGCCGGGTACATGGCTTATGAGTTTCTGACCAAAGGAACCATCTTGGGCAGGAAGTTCGACCCGGATCGAGCCGAAGCAAGCCCATTCCCGAACGCCGTTGCTCAGTACAAGAAGCCGAAGACGGAAGCCGCGCCGCCGGAGATCATAAAAAAAGAGCATCAGATTCAGAGCTACGCCGACGTGGCAACCATTTTGAAGACGGATAAGGCCCAGATATCCGGCATCGTCAACCCGACCCAACTGGCTCGGTGGCTTACCAAATAA

Protein sequence

MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWLTK
Homology
BLAST of CmoCh06G013150 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.2e-44
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH HSRGLL AGPSRKRKEP+ALKA E P++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHSRGLLPAGPSRKRKEPAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           RAEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT    I  IVNPTQL 
Sbjct: 61  RAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQLG 120

Query: 121 RWLTK 126
           RWL K
Sbjct: 121 RWLQK 123

BLAST of CmoCh06G013150 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.6e-43
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0

Query: 1   MSFHCHSRGLLSAGPSRKRKE---PSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKF 60
           MSFH HSRGLLSAGPS+KRKE   PSA KAGE  ++SNRLLAGYMAYEFLTKGT+ GRKF
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRKF 60

Query: 61  DPDRAEASP--FPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVN 120
           DP R EA+P     AV Q+KKPK++AAPPEI+KKEHQIQSYA+VA ILKT  + ISGIVN
Sbjct: 61  DPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIVN 120

Query: 121 PTQLARWLTK 126
           PTQL RWL K
Sbjct: 121 PTQLGRWLQK 130

BLAST of CmoCh06G013150 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.1e-43
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 1   MSFHCHSRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPD 60
           MSFH H RGLL  GPSRKRKEP+ALKA E P++SNRLLAGYMAYEFLTKGTILGR+F+P 
Sbjct: 1   MSFHFHIRGLLPPGPSRKRKEPAALKASEPPVSSNRLLAGYMAYEFLTKGTILGREFNPG 60

Query: 61  RAEASPFPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLA 120
           +AEA   P+A AQ+KK K+EAAPPEI+KKEHQIQSY +VATILKT  A I  IVNPTQL 
Sbjct: 61  QAEA--IPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQLG 120

Query: 121 RWLTK 126
           RWL K
Sbjct: 121 RWLQK 123

BLAST of CmoCh06G013150 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 0

Query: 1   MSFHCHSRGLLSAGPSRKRKEPSA----LKAGEQPITSNRLLAGYMAYEFLTKGTILGRK 60
           MSFH HSRGLLSAGPS+KRKEPS      KAGE  + SNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEH--QIQSYADVATILKTDKAQISGIV 120
           FDP R EA+P   AV+Q+KKPK EAAPPEI+KKEH  QIQSYA+VA ILKT  + ISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLARWLTK 126
           NPTQL RWL K
Sbjct: 121 NPTQLGRWLQK 131

BLAST of CmoCh06G013150 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 0

Query: 1   MSFHCHSRGLLSAGPSRKRKEPSA----LKAGEQPITSNRLLAGYMAYEFLTKGTILGRK 60
           MSFH HSRGLLSAGPS+KRKEPS      KAGE  + SNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 1   MSFHFHSRGLLSAGPSKKRKEPSTPAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGRK 60

Query: 61  FDPDRAEASPFPNAVAQYKKPKTEAAPPEIIKKEH--QIQSYADVATILKTDKAQISGIV 120
           FDP R EA+P   AV+Q+KKPK EAAPPEI+KKEH  QIQSYA+VA ILKT  + ISGIV
Sbjct: 61  FDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGIV 120

Query: 121 NPTQLARWLTK 126
           NPTQL RWL K
Sbjct: 121 NPTQLGRWLQK 131

BLAST of CmoCh06G013150 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-15
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 7   SRGLLSAGPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASP 66
           ++ ++   P   R   +A  A  +P+ SN+LLAGY+A+EFL  GT+ G  ++P +A+A P
Sbjct: 35  TKSIVKKTPIIPRPTTTATVALAEPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGP 94

Query: 67  FPNAVAQYKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
                 Q   P+      +I   +H+ + Y +VA IL+ D   + GIVNP+QLAR+L
Sbjct: 95  L---TTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFL 148

BLAST of CmoCh06G013150 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-14
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 14  GPSRKRKEPSALKAGEQPITSNRLLAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQ 73
           G SRKRK+  +     +  T N LLAGYMA+E+LT GT+LGRK     AE  P       
Sbjct: 10  GASRKRKDTES--DLREAATPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPL------ 69

Query: 74  YKKPKTEAAPPEIIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
                   +P +  + +   QSY++VA++ KTD   + G+VNPTQLA+W+
Sbjct: 70  -----VSPSPLQSREVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWI 106

BLAST of CmoCh06G013150 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-12
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 27  AGEQPITSNRL-LAGYMAYEFLTKGTILGRKFDPDRAEASPFPNAVAQYKKPKTEAAPPE 86
           A  +PI SN+L LAGY+++E+LT+GT+ G +++  RA+A       +   KP     P E
Sbjct: 61  AAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAE------SSKIKPSHTVEPAE 120

Query: 87  IIKKEHQIQSYADVATILKTDKAQISGIVNPTQLARWL 124
             + E + + Y +VA +L++D AQ+ GIVNP QLAR+L
Sbjct: 121 --ECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFL 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E9603.2e-4476.80uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC1114318... [more]
A0A0A0L4C13.6e-4374.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1[more]
A0A6J1IWN86.1e-4375.20uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265... [more]
A0A5A7U1L21.8e-4274.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWH51.8e-4274.05uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=... [more]
Match NameE-valueIdentityDescription
AT5G44060.11.8e-1536.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G23440.14.5e-1440.91embryo sac development arrest 6 [more]
AT1G04000.17.1e-1241.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 22..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G013150.1CmoCh06G013150.1mRNA