CmoCh06G013090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G013090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein PROTON GRADIENT REGULATION 5, chloroplastic-like
Location	Cmo_Chr06: 9805901 .. 9806662 (-)
RNA-Seq Expression	CmoCh06G013090
Synteny	CmoCh06G013090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCAACTCTCTCACAATTACACGAAAATATCCACTTTCGCAGAGCATCCAAAACCCTCCATTACGAACTTGCACCATGCTCTCTGAACTCTGATCCTTCCGCCATTTCCATGGCAGCTTCAATTTCTGCATATCGGCTTCACAAACCTCTTCCCTCCTCCTTCCATGGAGACTGGGGGTCCTCCATTTGCGGCGAAACCACCGGGATGCTCGCGAAATCGGTCCCGGAAGTGGTCCGAGTTGCAAAGCCGGTGAGATTCCGGCCAATGATGAAGAATGTTAACGAAGGGAAAGGCGTATTTGCGCCTGCTGTTGTTCTTGCTCGAAATATTATCGGAAAGAAGCGTTTCAATCAGTTGAGAGGCAAGGCCATTGCGCTGCACTCACAGGTAAATTAGTCACTTGAACGAACTGTCCTTATGAGTTTAGTGAGAAATGCGTGTTGAGCTTTTGGGTTTTGGACAGATTATTACGGAGTTCTGCAAATCTATTGGAGCTGATGCTAAGCAAAGGCAGGGTTTGATTAGGTTAGCCAAGAAGAATGGCGAAAGGTTAGGGTTCCTTGCATGATTTTATCACTCTGTTTCTGTAATCATAGATCTGTTTAGCTTCCATTTGTATATCTATCAAACACAATCTGAAGCATTATGTTTGCATATTCTTGTATATATTCATCGCTTTTAAGAAGAATCAAAGGATGATGAATGAAGGCCTAGAATGTTGATCAATATGATGACTCTATCAGGGTTTTTTGTTTTAGG

mRNA sequence

CCCTCAACTCTCTCACAATTACACGAAAATATCCACTTTCGCAGAGCATCCAAAACCCTCCATTACGAACTTGCACCATGCTCTCTGAACTCTGATCCTTCCGCCATTTCCATGGCAGCTTCAATTTCTGCATATCGGCTTCACAAACCTCTTCCCTCCTCCTTCCATGGAGACTGGGGGTCCTCCATTTGCGGCGAAACCACCGGGATGCTCGCGAAATCGGTCCCGGAAGTGGTCCGAGTTGCAAAGCCGGTGAGATTCCGGCCAATGATGAAGAATGTTAACGAAGGGAAAGGCGTATTTGCGCCTGCTGTTGTTCTTGCTCGAAATATTATCGGAAAGAAGCGTTTCAATCAGTTGAGAGGCAAGGCCATTGCGCTGCACTCACAGATTATTACGGAGTTCTGCAAATCTATTGGAGCTGATGCTAAGCAAAGGCAGGGTTTGATTAGGTTAGCCAAGAAGAATGGCGAAAGGTTAGGGTTCCTTGCATGATTTTATCACTCTGTTTCTGTAATCATAGATCTGTTTAGCTTCCATTTGTATATCTATCAAACACAATCTGAAGCATTATGTTTGCATATTCTTGTATATATTCATCGCTTTTAAGAAGAATCAAAGGATGATGAATGAAGGCCTAGAATGTTGATCAATATGATGACTCTATCAGGGTTTTTTGTTTTAGG

Coding sequence (CDS)

ATGGCAGCTTCAATTTCTGCATATCGGCTTCACAAACCTCTTCCCTCCTCCTTCCATGGAGACTGGGGGTCCTCCATTTGCGGCGAAACCACCGGGATGCTCGCGAAATCGGTCCCGGAAGTGGTCCGAGTTGCAAAGCCGGTGAGATTCCGGCCAATGATGAAGAATGTTAACGAAGGGAAAGGCGTATTTGCGCCTGCTGTTGTTCTTGCTCGAAATATTATCGGAAAGAAGCGTTTCAATCAGTTGAGAGGCAAGGCCATTGCGCTGCACTCACAGATTATTACGGAGTTCTGCAAATCTATTGGAGCTGATGCTAAGCAAAGGCAGGGTTTGATTAGGTTAGCCAAGAAGAATGGCGAAAGGTTAGGGTTCCTTGCATGA

Protein sequence

MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEGKGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA

Homology

[Close]

BLAST of CmoCh06G013090 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.9e-42
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 2   AASISAYRLHKPL-PSSFHGDWGSSICGET-TGMLAKSV--PEVVRVA-KPVRFRPMMKN 61
           AASISA   ++ L  +SF+G WGSSI GE    ML+K+V  P+  RV+ K +R  PMMKN
Sbjct: 3   AASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKN 62

Query: 62  VNEGKGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLA 121
           VNEGKG+FAP VV+ RN++GKKRFNQLRGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLA
Sbjct: 63  VNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLA 122

Query: 122 KKNGERLGFLA 128
           KKNGERLGFLA
Sbjct: 123 KKNGERLGFLA 133

[Close]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL
Match: A0A6J1FTX5 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111447270 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60
           MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG
Sbjct: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60

Query: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL
Match: A0A6J1IE84 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473217 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 123/127 (96.85%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60
           MAASISA +LHKPLPSSFHG WGSSICGETTGMLAKSVPEVVRV KPVRFRPMMKNVNEG
Sbjct: 1   MAASISASQLHKPLPSSFHGGWGSSICGETTGMLAKSVPEVVRVGKPVRFRPMMKNVNEG 60

Query: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL
Match: A0A5A7U4M1 (Protein PROTON GRADIENT REGULATION 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001970 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.4e-55
Identity = 109/127 (85.83%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60
           MA SISA  LHKPL SSFHG WG+S+CG+ + +L KSVP+VVRVAKPVRFRPMMKN+NEG
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KG+FAP VVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           E+LGFLA
Sbjct: 121 EKLGFLA 127

[Close]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL
Match: A0A1S3AW42 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103483556 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.4e-55
Identity = 109/127 (85.83%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60
           MA SISA  LHKPL SSFHG WG+S+CG+ + +L KSVP+VVRVAKPVRFRPMMKN+NEG
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KG+FAP VVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           E+LGFLA
Sbjct: 121 EKLGFLA 127

[Close]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL
Match: A0A0A0L870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134710 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.0e-55
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MAASISAYRLHKPLPSSFHGDWGSSICGETTGMLAKSVPEVVRVAKPVRFRPMMKNVNEG 60
           MA SISA  LHKPL SSFHG WG+SICG+ + +L KSVP+VVRVAKPVRFRPMMKN+NEG
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KG+FAP VVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           E+LGFLA
Sbjct: 121 EKLGFLA 127

[Close]

BLAST of CmoCh06G013090 vs. TAIR 10
Match: AT2G05620.1 (proton gradient regulation 5 )

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-43
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 2   AASISAYRLHKPL-PSSFHGDWGSSICGET-TGMLAKSV--PEVVRVA-KPVRFRPMMKN 61
           AASISA   ++ L  +SF+G WGSSI GE    ML+K+V  P+  RV+ K +R  PMMKN
Sbjct: 3   AASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKN 62

Query: 62  VNEGKGVFAPAVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLA 121
           VNEGKG+FAP VV+ RN++GKKRFNQLRGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLA
Sbjct: 63  VNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLA 122

Query: 122 KKNGERLGFLA 128
           KKNGERLGFLA
Sbjct: 123 KKNGERLGFLA 133

The following BLAST results are available for this feature:

BLAST of CmoCh06G013090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL05	2.9e-42	72.52	Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmoCh06G013090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTX5	1.7e-64	100.00	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A6J1IE84	1.0e-61	96.85	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A5A7U4M1	5.4e-55	85.83	Protein PROTON GRADIENT REGULATION 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AW42	5.4e-55	85.83	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucumis melo OX=3656...	[more]
A0A0A0L870	7.0e-55	86.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134710 PE=4 SV=1	[more]

BLAST of CmoCh06G013090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05620.1	2.1e-43	72.52	proton gradient regulation 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 1..127
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013090.1	CmoCh06G013090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron transfer activity