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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA mRNA sequence ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA Coding sequence (CDS) ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA Protein sequence MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH
Homology
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1ELK4 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434394 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 Query: 1 MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG 60 MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG Sbjct: 1 MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG 60
Query: 61 GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG 120 GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG Sbjct: 61 GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG 120
Query: 121 IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF 180 IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF Sbjct: 121 IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF 180
Query: 181 GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH 220 GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH Sbjct: 181 GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH 219
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1IHK4 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111473633 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41 Identity = 178/189 (94.18%), Postives = 179/189 (94.71%), Query Frame = 0 Query: 32 FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG 91 FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG Sbjct: 10 FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG 69
Query: 92 GLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGL- 151 GL GGG LGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGL Sbjct: 70 GLGGGGELGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGLG 129
Query: 152 GGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGGGFGGGGGYGGGA 211 GGGGGLGGG GGG GGG GGG+GGG G G GGGFGGGAGGGGGLGGGGGFGGGGGYGGGA Sbjct: 130 GGGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGAGGGGGLGGGGGFGGGGGYGGGA 189
Query: 212 GFGGGGGHH 220 GFGGGGG H Sbjct: 190 GFGGGGGGH 198
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1D0H4 (glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111016147 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27 Identity = 180/269 (66.91%), Postives = 190/269 (70.63%), Query Frame = 0 Query: 1 MASFSLRFAAFCFCLLI-------ALVGANN-VEDDKRFFHRPLGYFKGKGFHGGGLGG- 60 MA FSLR AF FC+L+ L GA+N VEDDK FHRPLG FKGKGF GGG+GG Sbjct: 1 MAHFSLRAVAFPFCVLLIATAAAAGLAGADNVVEDDKHLFHRPLGLFKGKGFRGGGIGGG 60
Query: 61 -----------GGGFGGGGGGGF--------------GGGYGGGGGLGGGGGFGHGIHKK 120 GGGFGGGGGGG GGG GGGGGLGGGGG GHGI+K+ Sbjct: 61 IGGGGGLGGGAGGGFGGGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKR 120
Query: 121 GFRH---------GGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG----- 180 GF+H GG+ GGGGLGGGGGLGGGGGLGGGGG+GH IYKRGFKH RFG Sbjct: 121 GFKHGRLGGGGLGGGIGGGGGLGGGGGLGGGGGLGGGGGLGHDIYKRGFKHGRFGGGGGL 180
Query: 181 GGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGG 218 GGGGGLGGGGG GGG GLGGGGGLGGG GGGLGGG GGG GGGAGGG+GGG GGG GGGG Sbjct: 181 GGGGGLGGGGGLGGGVGLGGGGGLGGGSGGGLGGGAGGGLGGGAGGGYGGGAGGGFGGGG 240
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1E8R1 (glycine-rich cell wall structural protein-like OS=Cucurbita moschata OX=3662 GN=LOC111431824 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 4.1e-26 Identity = 184/314 (58.60%), Postives = 192/314 (61.15%), Query Frame = 0 Query: 1 MASFSLRFAAFCFCLLIALVGANN-VEDDKRFFHRPLGYFKGKGFH-------------- 60 MASFSLR AF C+ IALVGA+N VEDDKR FHRPLG+ KG+GF Sbjct: 14 MASFSLRSVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRGFRGGGGFGGGGGGGFG 73
Query: 61 ---------------------------GGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGG 120 GGGLGGGGG GGGGG G GGG GGGGGLGGGGG Sbjct: 74 GGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGG 133
Query: 121 FGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG-----G 180 GHGI+K+GF+ GGL GGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFK G G Sbjct: 134 LGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIG 193
Query: 181 GGGGLGGGGGYGGGGGLGGGGGLGGGG------------------------------GGG 220 GGGGLGGGGG GGGGGLGGGGGLGGGG GGG Sbjct: 194 GGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGVGSGLGGGAGGGLGGGAGGGLGGGAGGG 253
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A0A0L443 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22 Identity = 172/284 (60.56%), Postives = 184/284 (64.79%), Query Frame = 0 Query: 1 MASFSLRFAAFCFCLLIALVGA-NNVEDDKRFFHRPLGYFKGK-----GFHGGGLGGGGG 60 MA FSLR FCFC+LIALV A NNVED+K FHRPLG++KG+ G GGG+GGGGG Sbjct: 1 MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60
Query: 61 FGG--------------GGGGGF------------------------GGGYGGGGGLGGG 120 FGG GGGGGF GGG GGGGGLGGG Sbjct: 61 FGGGAGGGGGLGGGGGLGGGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGG 120
Query: 121 GGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG---- 180 GG GHGI+K+G++ GGLGGGGGLGGGGGLGGGGG+GHGIYKRGFK G Sbjct: 121 GGLGHGIYKRGYKR------GGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKRGGLGGGGG 180
Query: 181 -------------GGGGGLGGGGGYGGGGGLGGGGGLGG------GGGGGLGGGVGGGYG 218 GGGGGLGGGGG GGGGGLGGGGGLGG GGGGGLGGG GGG G Sbjct: 181 LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGGGFGGGGGLGGGSGGGLG 240
BLAST of CmoCh06G012600 vs. TAIR 10
Match: AT2G32690.3 (glycine-rich protein 23 ) HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04 Identity = 130/216 (60.19%), Postives = 137/216 (63.43%), Query Frame = 0 Query: 1 MASFSLRFAAFCFCL-LIALVGANNVE--DDKRFFHRPL-------------GYFKGKGF 60 M S + F F L+A NVE DDK FFH+P G +K KGF Sbjct: 1 MGLISGKVCVFIFVFALVAEFSFGNVEVNDDKHFFHKPRPFLHKPRPFLHKHGIYK-KGF 60
Query: 61 HGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGG 120 G GLGGGGG GGGGG G GGG GGGGGLGGGGG G G GGL GG GLGGGGG Sbjct: 61 -GKGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGG--------GGLGGGSGLGGGGG 120
Query: 121 LGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGG--GGGLGGGGGLGGGGGG 180 LGGG GLGGGGG+G GGGGGGLGGGGGYGG GGGLGGGGG+ GGGG Sbjct: 121 LGGGSGLGGGGGLG-------------GGGGGGLGGGGGYGGGAGGGLGGGGGI--GGGG 180
Query: 181 GLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGG 199 G GGG GGG+GGGAGGGFG G GGG G GGG GGG Sbjct: 181 GFGGGGGGGFGGGAGGGFGKGIGGGGGLGGGYVGGG 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ELK4 | 1.1e-68 | 100.00 | glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434394 PE=4 S... | [more] |
A0A6J1IHK4 | 1.2e-41 | 94.18 | glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111473633 PE=4 SV=... | [more] |
A0A6J1D0H4 | 1.6e-27 | 66.91 | glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111016147 PE=4... | [more] |
A0A6J1E8R1 | 4.1e-26 | 58.60 | glycine-rich cell wall structural protein-like OS=Cucurbita moschata OX=3662 GN=... | [more] |
A0A0A0L443 | 6.1e-22 | 60.56 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G32690.3 | 1.1e-04 | 60.19 | glycine-rich protein 23 | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PRINTS | PR01228 | EGGSHELL | coord: 131..141 score: 44.32 coord: 41..52 score: 34.38 coord: 159..177 score: 46.05 coord: 100..115 score: 53.91 |
Relationships
The following mRNA feature(s) are a part of this gene:
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