CmoCh06G012600 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G012600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich protein 5-like
LocationCmo_Chr06: 9515149 .. 9515808 (+)
RNA-Seq ExpressionCmoCh06G012600
SyntenyCmoCh06G012600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA

mRNA sequence

ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA

Coding sequence (CDS)

ATGGCGTCTTTTTCTCTGCGGTTTGCGGCGTTTTGCTTCTGTTTGTTGATTGCTTTGGTCGGAGCTAACAATGTAGAAGACGACAAGCGGTTCTTTCATCGCCCACTTGGTTATTTTAAGGGTAAAGGGTTCCATGGAGGAGGTCTCGGTGGTGGTGGCGGTTTTGGTGGCGGCGGAGGCGGAGGTTTTGGCGGTGGGTATGGTGGAGGAGGTGGGTTGGGCGGTGGCGGAGGGTTCGGGCATGGTATTCATAAAAAGGGTTTTAGACATGGAGGATTGAGCGGCGGTGGAGGGTTGGGTGGTGGTGGAGGGTTAGGCGGAGGAGGTGGTTTGGGTGGAGGTGGAGGGATAGGGCATGGCATTTACAAGAGAGGTTTTAAGCATAGAAGATTTGGAGGTGGTGGTGGTGGTCTTGGTGGCGGTGGAGGATATGGAGGAGGAGGTGGTCTTGGCGGCGGTGGAGGACTTGGAGGTGGTGGTGGAGGCGGTCTGGGAGGAGGAGTTGGCGGTGGGTATGGAGGAGGTGCCGGGGGAGGCTTTGGTGGCGGATTCGGAGGAGGAGCAGGCGGGGGAGGTGGTCTCGGTGGAGGTGGAGGCTTTGGTGGAGGAGGCGGTTACGGCGGAGGAGCAGGATTTGGCGGCGGCGGCGGCCACCACTAA

Protein sequence

MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH
Homology
BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1ELK4 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434394 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.1e-68
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0

Query: 1   MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG 60
           MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG
Sbjct: 1   MASFSLRFAAFCFCLLIALVGANNVEDDKRFFHRPLGYFKGKGFHGGGLGGGGGFGGGGG 60

Query: 61  GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG 120
           GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG
Sbjct: 61  GGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHG 120

Query: 121 IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF 180
           IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF
Sbjct: 121 IYKRGFKHRRFGGGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGF 180

Query: 181 GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH 220
           GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH
Sbjct: 181 GGGFGGGAGGGGGLGGGGGFGGGGGYGGGAGFGGGGGHH 219

BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1IHK4 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111473633 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 178/189 (94.18%), Postives = 179/189 (94.71%), Query Frame = 0

Query: 32  FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG 91
           FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG
Sbjct: 10  FHRPLGYFKGKGFHGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHG 69

Query: 92  GLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGL- 151
           GL GGG LGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGL 
Sbjct: 70  GLGGGGELGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGGGGGLG 129

Query: 152 GGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGGGFGGGGGYGGGA 211
           GGGGGLGGG GGG GGG GGG+GGG G G GGGFGGGAGGGGGLGGGGGFGGGGGYGGGA
Sbjct: 130 GGGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGAGGGGGLGGGGGFGGGGGYGGGA 189

Query: 212 GFGGGGGHH 220
           GFGGGGG H
Sbjct: 190 GFGGGGGGH 198

BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1D0H4 (glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111016147 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 180/269 (66.91%), Postives = 190/269 (70.63%), Query Frame = 0

Query: 1   MASFSLRFAAFCFCLLI-------ALVGANN-VEDDKRFFHRPLGYFKGKGFHGGGLGG- 60
           MA FSLR  AF FC+L+        L GA+N VEDDK  FHRPLG FKGKGF GGG+GG 
Sbjct: 1   MAHFSLRAVAFPFCVLLIATAAAAGLAGADNVVEDDKHLFHRPLGLFKGKGFRGGGIGGG 60

Query: 61  -----------GGGFGGGGGGGF--------------GGGYGGGGGLGGGGGFGHGIHKK 120
                      GGGFGGGGGGG               GGG GGGGGLGGGGG GHGI+K+
Sbjct: 61  IGGGGGLGGGAGGGFGGGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKR 120

Query: 121 GFRH---------GGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG----- 180
           GF+H         GG+ GGGGLGGGGGLGGGGGLGGGGG+GH IYKRGFKH RFG     
Sbjct: 121 GFKHGRLGGGGLGGGIGGGGGLGGGGGLGGGGGLGGGGGLGHDIYKRGFKHGRFGGGGGL 180

Query: 181 GGGGGLGGGGGYGGGGGLGGGGGLGGGGGGGLGGGVGGGYGGGAGGGFGGGFGGGAGGGG 218
           GGGGGLGGGGG GGG GLGGGGGLGGG GGGLGGG GGG GGGAGGG+GGG GGG GGGG
Sbjct: 181 GGGGGLGGGGGLGGGVGLGGGGGLGGGSGGGLGGGAGGGLGGGAGGGYGGGAGGGFGGGG 240

BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A6J1E8R1 (glycine-rich cell wall structural protein-like OS=Cucurbita moschata OX=3662 GN=LOC111431824 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.1e-26
Identity = 184/314 (58.60%), Postives = 192/314 (61.15%), Query Frame = 0

Query: 1   MASFSLRFAAFCFCLLIALVGANN-VEDDKRFFHRPLGYFKGKGFH-------------- 60
           MASFSLR  AF  C+ IALVGA+N VEDDKR FHRPLG+ KG+GF               
Sbjct: 14  MASFSLRSVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRGFRGGGGFGGGGGGGFG 73

Query: 61  ---------------------------GGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGG 120
                                      GGGLGGGGG GGGGG G GGG GGGGGLGGGGG
Sbjct: 74  GGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGG 133

Query: 121 FGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG-----G 180
            GHGI+K+GF+ GGL GGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFK    G     G
Sbjct: 134 LGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIG 193

Query: 181 GGGGLGGGGGYGGGGGLGGGGGLGGGG------------------------------GGG 220
           GGGGLGGGGG GGGGGLGGGGGLGGGG                              GGG
Sbjct: 194 GGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGVGSGLGGGAGGGLGGGAGGGLGGGAGGG 253

BLAST of CmoCh06G012600 vs. ExPASy TrEMBL
Match: A0A0A0L443 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 172/284 (60.56%), Postives = 184/284 (64.79%), Query Frame = 0

Query: 1   MASFSLRFAAFCFCLLIALVGA-NNVEDDKRFFHRPLGYFKGK-----GFHGGGLGGGGG 60
           MA FSLR   FCFC+LIALV A NNVED+K  FHRPLG++KG+     G  GGG+GGGGG
Sbjct: 1   MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60

Query: 61  FGG--------------GGGGGF------------------------GGGYGGGGGLGGG 120
           FGG              GGGGGF                        GGG GGGGGLGGG
Sbjct: 61  FGGGAGGGGGLGGGGGLGGGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGG 120

Query: 121 GGFGHGIHKKGFRHGGLSGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKHRRFG---- 180
           GG GHGI+K+G++       GGLGGGGGLGGGGGLGGGGG+GHGIYKRGFK    G    
Sbjct: 121 GGLGHGIYKRGYKR------GGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKRGGLGGGGG 180

Query: 181 -------------GGGGGLGGGGGYGGGGGLGGGGGLGG------GGGGGLGGGVGGGYG 218
                        GGGGGLGGGGG GGGGGLGGGGGLGG      GGGGGLGGG GGG G
Sbjct: 181 LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGGGFGGGGGLGGGSGGGLG 240

BLAST of CmoCh06G012600 vs. TAIR 10
Match: AT2G32690.3 (glycine-rich protein 23 )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 130/216 (60.19%), Postives = 137/216 (63.43%), Query Frame = 0

Query: 1   MASFSLRFAAFCFCL-LIALVGANNVE--DDKRFFHRPL-------------GYFKGKGF 60
           M   S +   F F   L+A     NVE  DDK FFH+P              G +K KGF
Sbjct: 1   MGLISGKVCVFIFVFALVAEFSFGNVEVNDDKHFFHKPRPFLHKPRPFLHKHGIYK-KGF 60

Query: 61  HGGGLGGGGGFGGGGGGGFGGGYGGGGGLGGGGGFGHGIHKKGFRHGGLSGGGGLGGGGG 120
            G GLGGGGG GGGGG G GGG GGGGGLGGGGG G G        GGL GG GLGGGGG
Sbjct: 61  -GKGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGG--------GGLGGGSGLGGGGG 120

Query: 121 LGGGGGLGGGGGIGHGIYKRGFKHRRFGGGGGGLGGGGGYGG--GGGLGGGGGLGGGGGG 180
           LGGG GLGGGGG+G             GGGGGGLGGGGGYGG  GGGLGGGGG+  GGGG
Sbjct: 121 LGGGSGLGGGGGLG-------------GGGGGGLGGGGGYGGGAGGGLGGGGGI--GGGG 180

Query: 181 GLGGGVGGGYGGGAGGGFGGGFGGGAGGGGGLGGGG 199
           G GGG GGG+GGGAGGGFG G GGG G GGG  GGG
Sbjct: 181 GFGGGGGGGFGGGAGGGFGKGIGGGGGLGGGYVGGG 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ELK41.1e-68100.00glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111434394 PE=4 S... [more]
A0A6J1IHK41.2e-4194.18glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111473633 PE=4 SV=... [more]
A0A6J1D0H41.6e-2766.91glycine-rich protein 23-like OS=Momordica charantia OX=3673 GN=LOC111016147 PE=4... [more]
A0A6J1E8R14.1e-2658.60glycine-rich cell wall structural protein-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A0A0L4436.1e-2260.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131980 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G32690.31.1e-0460.19glycine-rich protein 23 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 131..141
score: 44.32
coord: 41..52
score: 34.38
coord: 159..177
score: 46.05
coord: 100..115
score: 53.91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G012600.1CmoCh06G012600.1mRNA