CmoCh06G012420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G012420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr06: 9380898 .. 9384004 (-)
RNA-Seq Expression	CmoCh06G012420
Synteny	CmoCh06G012420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTCTCGTCGTTGAAATCATTCACCGAGATCAGTCGATGATGCGCAAAGGAAGAAAATTCTTTGATCCTTTTAATTTTTGAATGTTTAACTCATTTATTCAATTCATCGTGGACTTCTTGGGAGTTACATTAGTGGTGATTCAAAGGTTTTTGGACCCGAATCACTTCGCCATTTATGTGGATGATTCTATTGTTGTAGGTTTGAAAGATAAAAGAAAGGCTGTTGGAATGAGCTTTCAAAGTAGAAATGATCTACAGGAATGGAGTGCAAGAGTTGTTGAGCGAGGAACAGTAATGGACTTCGACCTAAATTGCCCACCTCCAGATGAGTGCATTGATCCAACTGGTCCTCATCAGGAAGCAACACAGTACTACAATCATTACCAAGGACAAGCTATGGACAATCCCGAGTTTGTCGACGAGGACATTGCTATAATCTCCCCTAGGAAATTTGCTGAGGTATGTGATATTTTGATAAAATAATTTGAGTGTGTTTCTAACTAGTAGGCCATATAAGAGGATTAACATGGTGACAAATTTTTTAGGCCAGGAAGAACTTTCGACGAAACCACTTTGAGAGTAGCTGTGGTGTTGCCATTAGACGTAATGGTGCCTTCTCAGGTTTATAGCCTTTTCTTTTCTAAGTCTTAAGCTTCTCAATTTGTATTTCAGTTGTTGATTATCTCTCAGGTAGTCTAGCTACATTGCTATTTCCCAATATTTTCTGCCTTTCTGGCAAACTTGAGATGTTCATTGAGGATGTACTTGCATTTTTGGATCATCCTTTTTACTTTTTCAGTCTGGCGAGTCTTCTATATTCTGGATTCAAAAGACTGTTAGAATGAAATTTCAGTGCATATTATGATTATATTTAGTTAGGTAAGAGGAGTTCTGTGAGATCTCACATCGGTTTGGAGAGGGAAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTTCCTATTAGATGTGTTTTAAAACCGTGAGACTGACGGCAATACGTAATGGGCCAAAGTGGACAATATCTATTAGCGGTGGGCTCGGGTTGTTTTACAAATGGTATCAGAGCTAGACACCGAGCGGTGTGCCAGCGAGGACACTGGGCCCTCAAGGGGGGTGGATTGTGAGATCTCACCTCGGTTGGAGAGGGAACGAAACATTTCTTATAAGGGCGTGAAAACCTCTCCCTAGTAGACGCGTTTTTAAACCGTGAGGTTGACGGCGATACGTAATGGGCCGAAGCGGACAATATCTACTAGCGGTGGGCTTGGTCTGTTACAAGTTTCAATTTTATGAAATTAGATTTCCAAGTTCTTAGCATGCAGGCTATTGCGTTAAAGTTTTTCATGTCTTGTCATTAGGATTACTTAGCTTCCTCAGTATGGAACCAAGCATGAGGACTACAGTGAGATTAATTAACAAATTTATTATCGTTTGTTACTCTGTTGCCAATCTGCATATGTTTTCTTATTAACCCGTCTTCAACTATTTTGCAGATTTAACGAGTTTGGCCCCTTTTACAATTTGGCCGCCCCTTACAGACCGCAATAACGTATCTATACAAGAACAAACGATTCACAACTTGGACCTTTGCTTAAGCTGCGAAAGCAGTAGTAAAGCCACAAAGGTAATACTGATTGAACGGATTATTATTTGCTTTCAAATTTTTGGAGTTGCCTTGCCTATTCATTGTTCAAATCTTTGGCTGCCGTTTTTCTGTCTATTATGTGTTTTGAAGAATCCAGAGTCCATTTGATAAAAAATTCATAATTAATCGTTGTTTTAGAAAAAATGTGATCGTTTACCGAAGATTTATTCTCTTTTTTGCTAACAGAAGTATTAGCCAAATGGGAAAAAAAATGAAAAAGAACTTTTCGGAACCACCGTTTTAAGTTTAAATACAGTTTCAGCTAACGAGTATGTTCCGTTATCCGTTCATCTCCTTGATATCAATTAGGTGGTGGAAATATAGCAGCCAGCAGCTCTAGGAAAATCTTCATTCAAGTTTTGATCCATAAAGCTAAAAAAAACTGTTTGATTAATTGCTTGTAAATTTGGATTATCCTTTAGATGCACGTTCCTCTCAGGGTCGGTCTGGTCTAATCGAAGTCCTTCTCCGGTGCAAACCTCCCAACCAATCTGTTACATAGTTTTCTAGAATAGCTTTTTCTCTTCAGATGCTGTCATTCTGCTGTGACTCATAATATGATCTCCGTAGAATTTGCTTCATCTTGTGCAAGGTTCTGTAAAGGCCATGTATTGTTCTTAGCCAAGATTGCATGTGTTGGAGTCAAATTTGTACTTCTTAGCTTCATTAATACCTTGGAAAAACTAGTTTTCCAATGTGCTGCTACCGTTTTAATCGTTGGAAGTTCGTGAAATAATAATTTATCTCACACATCCAACGGTATAAATCTGACAGTCATATCGTACCAGCATCCTTTCCATCTATCAGTGAAATTGCCATCGGCACGAACGCCGATTGTTTTGGCGAACTCGTAACCAACTTCAAGACCACGAAACATTTAAGGTTCAATCCCTAATGAGGTTATATCTGAAGTAGATCTTTGATGTTTCTCAATCTTATGCAGTTCACTTGGATTTTGCTAGCAATTACATCATTTAAACATCTGATTAAACATCATTTTCCATCCCGATTTCTTTCTTCGAGCTTGAAACTAACTGTAAACTCTGTTATTGCAGGCAACAATTGACACAGACATCCCTTCTGCACTTGCACAAACTAGCAGCAGCCTCCCACCTGCAGCAGCCTCGGGTTTGCGGTGCGCGATCTGCATAGAAGCATTGGTTGAAGAAACAACAACCAAATGCGGGCACGTTTTCTGCAAGAGTTGCATCGAAACAGCCATCGCTACCCAGCACAGATGTCCTATATGTCGGCGTAAGCTTCGAAAACGAGATATTATCCGAATTTATCTACCGTTTTGAACATGAAAAATATGAATACAAATAAAAGAATATTGCATCTGTATTCTTTTTCTGATGACGAACTAGGCTTGTACTACTTGCACACAGTTGCATTAACAACAAGTATAGATTTCTTCATTTCTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTT

mRNA sequence

ATGGTATTCTCGTCGTTGAAATCATTCACCGAGATCAGTTTGAAAGATAAAAGAAAGGCTGTTGGAATGAGCTTTCAAAGTAGAAATGATCTACAGGAATGGAGTGCAAGAGTTGTTGAGCGAGGAACAGTAATGGACTTCGACCTAAATTGCCCACCTCCAGATGAGTGCATTGATCCAACTGGTCCTCATCAGGAAGCAACACAGTACTACAATCATTACCAAGGACAAGCTATGGACAATCCCGAGTTTGTCGACGAGGACATTGCTATAATCTCCCCTAGGAAATTTGCTGAGGCCAGGAAGAACTTTCGACGAAACCACTTTGAGAGTAGCTGTGGTGTTGCCATTAGACGTAATGGTGCCTTCTCAGATTTAACGAGTTTGGCCCCTTTTACAATTTGGCCGCCCCTTACAGACCGCAATAACGTATCTATACAAGAACAAACGATTCACAACTTGGACCTTTGCTTAAGCTGCGAAAGCAGTAGTAAAGCCACAAAGGCAACAATTGACACAGACATCCCTTCTGCACTTGCACAAACTAGCAGCAGCCTCCCACCTGCAGCAGCCTCGGGTTTGCGGTGCGCGATCTGCATAGAAGCATTGGTTGAAGAAACAACAACCAAATGCGGGCACGTTTTCTGCAAGAGTTGCATCGAAACAGCCATCGCTACCCAGCACAGATGTCCTATATGTCGGCGTAAGCTTCGAAAACGAGATATTATCCGAATTTATCTACCGTTTTGAACATGAAAAATATGAATACAAATAAAAGAATATTGCATCTGTATTCTTTTTCTGATGACGAACTAGGCTTGTACTACTTGCACACAGTTGCATTAACAACAAGTATAGATTTCTTCATTTCTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTT

Coding sequence (CDS)

ATGGTATTCTCGTCGTTGAAATCATTCACCGAGATCAGTTTGAAAGATAAAAGAAAGGCTGTTGGAATGAGCTTTCAAAGTAGAAATGATCTACAGGAATGGAGTGCAAGAGTTGTTGAGCGAGGAACAGTAATGGACTTCGACCTAAATTGCCCACCTCCAGATGAGTGCATTGATCCAACTGGTCCTCATCAGGAAGCAACACAGTACTACAATCATTACCAAGGACAAGCTATGGACAATCCCGAGTTTGTCGACGAGGACATTGCTATAATCTCCCCTAGGAAATTTGCTGAGGCCAGGAAGAACTTTCGACGAAACCACTTTGAGAGTAGCTGTGGTGTTGCCATTAGACGTAATGGTGCCTTCTCAGATTTAACGAGTTTGGCCCCTTTTACAATTTGGCCGCCCCTTACAGACCGCAATAACGTATCTATACAAGAACAAACGATTCACAACTTGGACCTTTGCTTAAGCTGCGAAAGCAGTAGTAAAGCCACAAAGGCAACAATTGACACAGACATCCCTTCTGCACTTGCACAAACTAGCAGCAGCCTCCCACCTGCAGCAGCCTCGGGTTTGCGGTGCGCGATCTGCATAGAAGCATTGGTTGAAGAAACAACAACCAAATGCGGGCACGTTTTCTGCAAGAGTTGCATCGAAACAGCCATCGCTACCCAGCACAGATGTCCTATATGTCGGCGTAAGCTTCGAAAACGAGATATTATCCGAATTTATCTACCGTTTTGA

Protein sequence

MVFSSLKSFTEISLKDKRKAVGMSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF

Homology

[Close]

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot
Match: Q9D9R0 (E3 ubiquitin-protein ligase RNF125 OS=Mus musculus OX=10090 GN=Rnf125 PE=2 SV=3)

HSP 1 Score: 50.8 bits (120), Expect = 2.5e-05
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 163 SSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIET 222
           SS ++K+   +  P  L ++  S  P   +   C++C+E L +   T+CGHVFC+SCI T
Sbjct: 6   SSDSSKSAPASATPRTLERSGDSELP--ITSFDCSVCLEVLHQPVRTRCGHVFCRSCIAT 65

Query: 223 AIATQHR--CPICRRKL 238
           +I   ++  CP CR  L
Sbjct: 66  SIKNNNKWTCPYCRAYL 80

[Close]

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot
Match: Q96EQ8 (E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens OX=9606 GN=RNF125 PE=1 SV=4)

HSP 1 Score: 50.1 bits (118), Expect = 4.3e-05
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 187 PPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIA-TQHRCPICRRKL 238
           P    +   CA+C+E L +   T+CGHVFC+SCI T++   +  CP CR  L
Sbjct: 28  PELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 79

[Close]

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot
Match: P87176 (E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx8 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.3e-05
Identity = 37/129 (28.68%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 131 PFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESS-------------SKATKATIDTDIPS 190
           P ++   LT+ N++  Q  TI ++ + L+ E+S                T A I+ + PS
Sbjct: 132 PASVENSLTNVNSIHAQPTTISDM-IDLTDETSYDPRKQKFEQGKNPSTTNAEIEKEEPS 191

Query: 191 ALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIAT---QHRCPICR 244
                 SS      +  +C IC+++    + T CGH+FC  CI +A+ T     +CP+CR
Sbjct: 192 KKQVVPSS---QRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCR 251

[Close]

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot
Match: Q17RB8 (LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens OX=9606 GN=LONRF1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.4e-05
Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 192 SGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRK 240
           S   C++C+    E  TT CGH FCK+C+E  +     CP+C+  L++
Sbjct: 475 SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKE 522

[Close]

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot
Match: D3YY23 (LON peptidase N-terminal domain and RING finger protein 1 OS=Mus musculus OX=10090 GN=Lonrf1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.4e-05
Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 192 SGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRK 240
           S   C++C+    E  TT CGH FCK+C+E  +     CP+C+  L++
Sbjct: 464 SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKE 511

[Close]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL
Match: A0A6J1F4D6 (uncharacterized protein LOC111441975 OS=Cucurbita moschata OX=3662 GN=LOC111441975 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.1e-128
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 23  MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 82
           MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP
Sbjct: 1   MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 60

Query: 83  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRN 142
           EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRN
Sbjct: 61  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRN 120

Query: 143 NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEA 202
           NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEA
Sbjct: 121 NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEA 180

Query: 203 LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 250
           LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF
Sbjct: 181 LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL
Match: A0A6J1ICB2 (E3 ubiquitin-protein ligase BRE1-like OS=Cucurbita maxima OX=3661 GN=LOC111473500 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.3e-123
Identity = 220/227 (96.92%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 23  MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 82
           MSFQSRNDLQEWSARVVERGTVMDFDLN PPPDECIDPTGPHQEATQYYNHYQGQAMDNP
Sbjct: 1   MSFQSRNDLQEWSARVVERGTVMDFDLNFPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 60

Query: 83  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRN 142
           EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDL+SLAPFTIWP LT RN
Sbjct: 61  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLSSLAPFTIWPTLTSRN 120

Query: 143 NVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEA 202
           NVSIQEQTIHNLDLCLSCESSSKATKATIDT IPSALAQTSSSLPPAA+SGLRCAIC+EA
Sbjct: 121 NVSIQEQTIHNLDLCLSCESSSKATKATIDTGIPSALAQTSSSLPPAASSGLRCAICMEA 180

Query: 203 LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 250
           LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF
Sbjct: 181 LVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 227

[Close]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL
Match: A0A6J1D1D9 (E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like OS=Momordica charantia OX=3673 GN=LOC111016128 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 2.2e-100
Identity = 186/233 (79.83%), Postives = 202/233 (86.70%), Query Frame = 0


Query: 23  MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 82
           MS Q RNDL EW+ARVVER TVMDFDLNCPPPDECI+PTGP +EA Q++NH+Q QA DNP
Sbjct: 1   MSIQGRNDLHEWNARVVERRTVMDFDLNCPPPDECINPTGPREEAAQFFNHHQRQATDNP 60

Query: 83  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDLTSLAPFTIWP 142
           + VDEDIAIISPRKFAEARKNFRRNHF+SSCGVA+R N      GA SD+TS  PFTIWP
Sbjct: 61  DVVDEDIAIISPRKFAEARKNFRRNHFDSSCGVAVRVNANTEVYGALSDVTSWPPFTIWP 120

Query: 143 PLTDRNNVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRC 202
           PLT  NNVSI+EQTIHNLDLCLS ESSS+A     DTDIPSALAQ+SS +PPAA S LRC
Sbjct: 121 PLTINNNVSIREQTIHNLDLCLSSESSSRARTKATDTDIPSALAQSSSIIPPAAPS-LRC 180

Query: 203 AICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 250
           AICIE LVEETTTKCGHVFC++CIETAIATQHRCPICRRKLRKRDIIRIYLPF
Sbjct: 181 AICIEPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPF 232

[Close]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL
Match: A0A5A7U158 (E3 ubiquitin-protein ligase RNF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002840 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 182/234 (77.78%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 23  MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 82
           MS QS NDL +WSARV+ER TV+DFDLNCPPPDECIDPTGP  EA QYYNHYQGQA D  
Sbjct: 1   MSIQSSNDLHDWSARVIERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYNHYQGQATD-- 60

Query: 83  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDLTSLAPFTIWP 142
             +DEDIAIISPRKFAEARKNFRRNHFES  G  IRRN      GA SD+T+  PFTIW 
Sbjct: 61  -AIDEDIAIISPRKFAEARKNFRRNHFESGYGAVIRRNGNTEVYGALSDVTTWPPFTIWS 120

Query: 143 PLTDRNNVSIQE-QTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLR 202
           PLT  NNVS+QE QTIHNLDL LSCESSS+ATKA  DTDIPS LA  SSS+PP   + LR
Sbjct: 121 PLTISNNVSLQEQQTIHNLDLRLSCESSSRATKAKTDTDIPSTLA-LSSSIPPTDRT-LR 180

Query: 203 CAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 250
           CAICIE LVEETTTKCGHVFC++CIETAIATQHRCPICRRKLRKRDIIRIYLPF
Sbjct: 181 CAICIEPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPF 229

[Close]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL
Match: A0A1S3AW86 (uncharacterized protein LOC103483470 OS=Cucumis melo OX=3656 GN=LOC103483470 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 182/234 (77.78%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 23  MSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNP 82
           MS QS NDL +WSARV+ER TV+DFDLNCPPPDECIDPTGP  EA QYYNHYQGQA D  
Sbjct: 1   MSIQSSNDLHDWSARVIERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYNHYQGQATD-- 60

Query: 83  EFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRN------GAFSDLTSLAPFTIWP 142
             +DEDIAIISPRKFAEARKNFRRNHFES  G  IRRN      GA SD+T+  PFTIW 
Sbjct: 61  -AIDEDIAIISPRKFAEARKNFRRNHFESGYGAVIRRNGNTEVYGALSDVTTWPPFTIWS 120

Query: 143 PLTDRNNVSIQE-QTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLR 202
           PLT  NNVS+QE QTIHNLDL LSCESSS+ATKA  DTDIPS LA  SSS+PP   + LR
Sbjct: 121 PLTISNNVSLQEQQTIHNLDLRLSCESSSRATKAKTDTDIPSTLA-LSSSIPPTDRT-LR 180

Query: 203 CAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 250
           CAICIE LVEETTTKCGHVFC++CIETAIATQHRCPICRRKLRKRDIIRIYLPF
Sbjct: 181 CAICIEPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPF 229

[Close]

BLAST of CmoCh06G012420 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 48  DLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRN 107
           DLN  P D+                      M + + +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRN- 79

Query: 108 HFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESSSKAT 167
                     RR     D+ S    T +P      N+S + + I + +  + CE +S   
Sbjct: 80  ---------ARRRPLMVDVES-GGTTRFPA-----NISNKRRRIPSSESVIDCEHAS--- 139

Query: 168 KATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQ 227
               + ++ S ++++ +  PP       C IC+    EE +TKCGH+FCK CI+ AI+ Q
Sbjct: 140 -VNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQ 199

Query: 228 HRCPICRRKLRKRDIIRIYLP 249
            +CP CR+K+  +++IR++LP
Sbjct: 200 GKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of CmoCh06G012420 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 48  DLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRN 107
           DLN  P D+                      M + + +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRN- 79

Query: 108 HFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESSSKAT 167
                     RR     D+ S    T +P      N+S + + I + +  + CE +S   
Sbjct: 80  ---------ARRRPLMVDVES-GGTTRFPA-----NISNKRRRIPSSESVIDCEHAS--- 139

Query: 168 KATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQ 227
               + ++ S ++++ +  PP       C IC+    EE +TKCGH+FCK CI+ AI+ Q
Sbjct: 140 -VNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQ 199

Query: 228 HRCPICRRKLRKRDIIRIYLP 249
            +CP CR+K+  +++IR++LP
Sbjct: 200 GKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of CmoCh06G012420 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 48  DLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRN 107
           DLN  P D+                      M + + +++D+   S   FAEA+   R  
Sbjct: 20  DLNAVPVDQEGTSASVRTLTVPITPSQPAPTMIDVDAIEDDVIESSASAFAEAKSKSRN- 79

Query: 108 HFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESSSKAT 167
                     RR     D+ S    T +P      N+S + + I + +  + CE +S   
Sbjct: 80  ---------ARRRPLMVDVES-GGTTRFPA-----NISNKRRRIPSSESVIDCEHAS--- 139

Query: 168 KATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQ 227
               + ++ S ++++ +  PP       C IC+    EE +TKCGH+FCK CI+ AI+ Q
Sbjct: 140 -VNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQ 199

Query: 228 HRCPICRRKLRKRDIIRIYLP 249
            +CP CR+K+  +++IR++LP
Sbjct: 200 GKCPTCRKKVTAKELIRVFLP 200

[Close]

BLAST of CmoCh06G012420 vs. TAIR 10
Match: AT3G07200.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 29/84 (34.52%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 165 KATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAI 224
           ++ + ++D+   +   ++ +  PP       C IC+    +E +TKCGH+FCK CI+ A+
Sbjct: 96  RSDQTSVDSVELNKPRKSKAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNAL 155

Query: 225 ATQHRCPICRRKLRKRDIIRIYLP 249
           + Q +CP CR+K+  +D+IR++LP
Sbjct: 156 SLQAKCPTCRKKITVKDLIRVFLP 179

[Close]

BLAST of CmoCh06G012420 vs. TAIR 10
Match: AT3G07200.2 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 29/84 (34.52%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 165 KATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAI 224
           ++ + ++D+   +   ++ +  PP       C IC+    +E +TKCGH+FCK CI+ A+
Sbjct: 96  RSDQTSVDSVELNKPRKSKAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNAL 155

Query: 225 ATQHRCPICRRKLRKRDIIRIYLP 249
           + Q +CP CR+K+  +D+IR++LP
Sbjct: 156 SLQAKCPTCRKKITVKDLIRVFLP 179

The following BLAST results are available for this feature:

BLAST of CmoCh06G012420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9D9R0	2.5e-05	36.36	E3 ubiquitin-protein ligase RNF125 OS=Mus musculus OX=10090 GN=Rnf125 PE=2 SV=3	[more]
Q96EQ8	4.3e-05	42.31	E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens OX=9606 GN=RNF125 PE=1 SV=4	[more]
P87176	4.3e-05	28.68	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces...	[more]
Q17RB8	7.4e-05	37.50	LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens OX=960...	[more]
D3YY23	7.4e-05	37.50	LON peptidase N-terminal domain and RING finger protein 1 OS=Mus musculus OX=100...	[more]

BLAST of CmoCh06G012420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4D6	7.1e-128	100.00	uncharacterized protein LOC111441975 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1ICB2	5.3e-123	96.92	E3 ubiquitin-protein ligase BRE1-like OS=Cucurbita maxima OX=3661 GN=LOC11147350...	[more]
A0A6J1D1D9	2.2e-100	79.83	E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like OS=Momordica char...	[more]
A0A5A7U158	2.6e-93	77.78	E3 ubiquitin-protein ligase RNF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3AW86	2.6e-93	77.78	uncharacterized protein LOC103483470 OS=Cucumis melo OX=3656 GN=LOC103483470 PE=...	[more]

BLAST of CmoCh06G012420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48655.2	3.6e-15	27.36	RING/U-box superfamily protein	[more]
AT5G48655.1	3.6e-15	27.36	RING/U-box superfamily protein	[more]
AT5G48655.3	3.6e-15	27.36	RING/U-box superfamily protein	[more]
AT3G07200.1	2.2e-12	34.52	RING/U-box superfamily protein	[more]
AT3G07200.2	2.2e-12	34.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 196..233 e-value: 2.6E-5 score: 33.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 196..234 score: 13.182669
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 195..233 e-value: 4.7E-11 score: 42.3
None	No IPR available	PANTHER	PTHR47094	ELFLESS, ISOFORM B	coord: 25..248
None	No IPR available	PANTHER	PTHR47094:SF12	ELFLESS, ISOFORM B	coord: 25..248
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 192..246
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 181..248 e-value: 1.5E-17 score: 64.7
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 211..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G012420.1	CmoCh06G012420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding