CmoCh06G012290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G012290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L37a
LocationCmo_Chr06: 9307890 .. 9315323 (+)
RNA-Seq ExpressionCmoCh06G012290
SyntenyCmoCh06G012290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTCCCCGCTTGGCCGTTCAGTCTCTGCTCCAGCGTCTCTGCACCAGCGTCTCTCCAGAGGTATCCTTGTTGCTCGAAGGTTTCAACAATGGTACTATATCTCTCTTACGGATTTCATGATTTTCTTTACTACTTTCTTGTTTCTGGAAATTTGAAGTTCTTTTAGAAGGTTCCAAGATGAGAGATGATGTCTGTAGTCTGTAGGATTAATAATTAGCGAGGAGAGATTAATGATCTAGAATCGAAAGCTTGAGGTTCGTTCTTCTGATAAATGAAACGTTGGGAAGGAAAATAGGTCGCTCTGTGGTAGAGGATAATCAATTCGGTTTCATGGATCTCACGTAGTTAAAGCTTGATTTAATCTAGCAAATAGGTTAGGTAATTTACGGTTATCCGTTTTTCTTTGATTTTGTATATTTTCACTACCGGTCTACATCCAGTTCTATTCGAAGAGAGAATTGAACATGTCCTGATAGGAGTTCTTTGGGACGATTGTTCACTGAATATATATATATATATACACACACACACACATATATGGTACGTATTCTGTAGCGATTTCTAACTTGTGCTTATTTTGATTTCCTGTGTAATCGCAGACGAAGAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTATGTGCTAACATCGTATGCTTGTACTAGCAGTGAAATTTAATCTGTACTCCTTATATTAGGGCAACTGGTGTGAGTTGTGGATTGATAAGAGATTATTGAATGATGATTTCTAAAGAAGCGCTGCCTTCAACGACGTTAACATATGGCTTGATTAGTTGCGCAATAGTTTTAAATTGATTGGGAGCTTTTCAAGAGCCTCCTGTTCCTCTATCCTTTGCTGTTCATGTTTGTGTACATTATGTTATGCTTAGTTATGTTTGTAATTGGTTTATTATCTGTCTTCTGTACCAGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGGTAAGTTTATTTACTCAGCTTTTACTTTACTGCTATTTGGGTTACAAGTAGTTCCATGCAATGTTTTAAAAGGCCACCTTGAGGTGATATGAGGCATAAGCCTCAATTTTTTTATGATATCTTTAACATCATTACTGCTATAATGTTTTTAAAGCTTAATTATTAAATGAAGCAATAGTGAAGATTGTTACCACTCGAACTTTTATATTATAGAGAATGAGGCAAAATTAGTGTAGAGACTTTAATCCTCGGTGCATTTTGATAGGATGTGCAAGTCCCGAGGCCAAAAGTTAGTCTTCCTTTGAGATAAGCCTTAATAGCCTTTTAAAACGTTGTTTCCATGACAATGCTAGAGTGTAAACATACTGATAAATGACTTTAATGTTGGTCTCGATTGCAAATTTTCCGGTCCAAATACCGCGGTGACATGGTTTACGATGTATCTTCCATAAAAATGTAATATCATTGGATCGATCAACTCCTTTTCCTATTTATAGAAAACTACTTGCCATCAGTATAACAATTCTCTGAACTTCTGATAAAAGATGACATTTCGGTGGTACTTGTTAAATTTCAAGATTCAAATCAATGACTTCTGTCTCAAACTCTTAACAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAAGTGAGTAGATTTAATTGGTTCTTGTTATGCAATGCTATTTGTGCTTTCAAACCCAGTTCAAGGTTTTGATTTTGTTTCTTTGTTTTGGGCAGCACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGAGGGAACAGACAGAGAGTTAAGTTTAATTTAGATTTTGTTTTTCTTCTGTCTTCAGTTTAATTTAGTGGTCTGTGATAGTGTAGAGTTTTTTGGAAGCAATTTGAGTACCCATTTGACTTCGTTTGAAGCTGAGATTCCAGAGCTTTTAAACTTTAGCTGCTCTCTGCTCTCTTGGCCACATTATTTTTAATCATTCTGGATTTTGAGACTGCAACATCTTTGCTTGCCTTCCAATATTGTTTATTTTTTGGTCAACTGCATCACATCACTATCGGGCGTTATTTAAGTGAAAAATGCCTCGGACGTCTAGAGTGTGTCGGGGAAGTCTTCCTTGTCTCTATCCTGGTCGGGGGAATTAGGAAATTTTTTTATCAATAATTCTATTTTCTAATATAATTTCTATTAAGAGCATAAAACATCCTTATGAATCCTTAATATTTTATGAACATATATTCAATGTTCTAACATGGTTTTTACAATAGTTCATTTCATCTACAATAATATTTATTCATTATAATTAAAAAAAAGTATAAATAGGAGTTTGGACATGGTTATATACAGACGTTAGGTGTTTTTGAATCGGGAAATGTGCAATTTTGTTGATCTAATTGATGGTATTATATGTTTATCATTATATTTAAAATTTGAGCGAATTGTAACTTTGTTATATAAAAGAATGTTCTTTATCCTTACCTACGGTGTTAGGATTCAAACTTCATACCACCGTTAATGATATTTTTTTATTTTAATATGCCACTAAATCTTACAGGTATGCTTACTTTCTTATTTAATTTAATAATTACCTCTAAATTTTTTTATTTTGGGTGAAATGCATAAAATTATATAAAATCATTATATTATGCATTCATTACATAATACCTTTAATATAAAAATAATATATTATTATATTGGACCATCTGCTTGAGATGTTCGAGTCTCTGTGCCCCGATTTTGGAGTTTGAAAGACCTATTAGAGTTGAAAGGAGTATTAGAGTTGAAAGGAGATGACCTGATCCAATAGAACACCTTGAGAGACAAAAGAAAATGGTGCTGATTAGGCATGCAGAGTGTGATGTCCTTCTCAAAAAAGTTAATTAATTATCAATATATATTATGTTAACTTGAATAATTTAAAGGGATAGAGATGTATATCCAATCCGATAAATCAGAGCAACTCAACCAAAATTATATGAGTTAGGTCGGGTTGGGTTATTTCTTGAGTTCGAATTGACTCGGTTCGATTTTGGGTTCATAGGAAAAAAACCTCAGGTTAACCCGAATCGAACAAAACTTATAAAATACATTAAAAAGTTTAGCGTATTCATGAGTCTGTCAGAATAGTAATAACTTACTAGAACAATTTTATCGTTAAAAAGTTTATTAAAATTGAATAAAATTTTTTAATATAGCATTGATAAATTAGGGCTAAATTTATTTATATACTATAAAAACTATTTTTTATTTTGATTTGATTAAATATATATAACCTAAATTATAATAAAATTGGCCGAAAATGCTCTTAGATCCACTCCGAGAGCCTGTTGGGCCCTTCAGAAGGAAAGAGCCCAACGCGCACTTGCATGCTCTAAAATTGTCCCACATCGAAAAAGTGTAGGAAGAGGAGAGGTCGGAAGCAGTATATAAAGGAAGGAACTACAACCGATGCAACATACTTACCTGGACGGGGTCAATGGGTGATCATGAAGACTCATGGCCTAGGTTGGTGACCTCCATTGCACTTAGGAGGGGTGCCCGCCTAAGGTCTGCCCAAAGTGGCAGAGCCTACGTCATAATTTGTGGCAGCGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATGTTCAGTCCAAATGCTTCACGAATTTTACTACCTCGTACGTTGATGCTCGAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTTAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCTTACACCAATAACACATTTTCGACGGTATGATTCATCCTCTGGATTTTTCATTTTCGCTCGTTTTCTAGCTTATCCGCAATTGCAATGTAGTCTCATTCTCTATTTGATTTTTTTCTCTAGATTTTTGCCATTTTCGCCTGTTTTCTCGGCGTTTTTTAGTTCATCTGAAATTTCGCTTTTGTTTCTCTCTAAGAAAAGAGAATTCTCGGTTTGATTATGATGTGTTTTGTATTGGCAGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGGTGATTTCCATTTCCTCTGCTTCTGATTATCACGCTTTATTTATTCTGTTTTGTTATTAAATTGTAGCGATTTTCTTTTCTGAGATTTCTATCTGTTCATCTGTTTAATCTTAAACCCTAATCGACTCAAATCGCCACTTCCAATGAAGTATGAAAACCTTTAAATCTTGCAAGTGGAGTGACGATTTAGGAGACTTTAGCGAATTACAAGACAAATGAAGTCTTTAAGATCACAGGATCGAATCGAAACCAAACACAAACTATAATCACCATCGGATTGTAGATTATCACCCGAGTTTTCTTGTCGTAGATTTTATTTTTGTTTTATCAACAGGTATAGGATTTGGATATCTGAAAAGGTTATATATCAAGTACTTACAGGAAATGGAGATGGACTTTTAAGTTGAAACTATATTTCAAAAGGTTTCTTCTCAGAATGTGTTCCAAATCTTTCCGGTTTGTAAGCTACTCCATAGATCGTTTCGTTATTGTTCTTCACTTGTTTCTTTTGTCATCGACAATAATCAGTTTATTGTTATAGTTGGAAGGGAAATCCAGTGGAAAAGTAAAGAGCAAGAGTTCTTTTTCTAAAGGCACTCTACATCATTATTGTAACAGCTCAAGTTCACCGCTAGCAGATATTATTCTCTTTGGATTTTTCCTTTTGGGTTTCCCCTCAAAGTTTTTATAATGCGTTTGTTAGGGAGAGATTTCCACGCCCTTATACAAAAATGCTTCGCTCTCCTTTCCAATCGATGTGAGATCTTATAATCCACCCCCCTCTTCAGGGCGGCCCAATGTCGTCACTGGCACTCATTCCTCTCTCCAATCAATGTGAGATCTCACAATTGTCTTTTAGAAATATGTGAATGATGGAAAGCTTGATAGACAATCTTAGCTTGCAAACTGAGTATAGCTCAATTGGTTCAATGCGTATATCCTTGATTAGGAGGTCAAAAGTGCGAATTTCCCCATTCCCATAAGTTGTTCAACTAAAAAAAAGAGAAGTCAACCATAACTACAAAGCCACTAGAACAATGGTTCCTCTTAAGATCCACAATCATCGAGATTGGAGAAAGATTTTAAACTGAAGCCTCCAAACAAGCCATCACCTGAATAAGAACGGGACTACTAGGACGCAATCCAAACTTGGGGACACACTATGCAAGGAGTGTTAGCAATGGCCCCTTGCATAGGCGTCTCTACAATCTTGCTTGGATCAAACTTTAGTCTTTGGTCCATTTTAAATTGGGTACTCCAATCTTTAAGAAGACGATATTGCCACTGTATCAAGTTAAGATAATTTCAACTGTTCAACTAATATGATACCAAAGTGCTGTGTCAATGTTAAACGGATACTTTTACTGGTTAATAAGATTATAACAGCAAAGACCTTTGAGGGCCACCTCCTTGCCTACTCGTTTCTCTAAATGTCTATTGTTCTGTAATTTCTAGGGGAAGGTTATTCTTGAAGCTCCTACTCGTCCCCCACCTGCGCCTACTCTTGTTCCTCAATGTTCTTTGCATTGTGTGATAGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGGGGTCGGATCAACACTTGGAGCTATTTCATTTTCATTTTAATCCCAATTTTTGGTTCTGTTACCCATCAATTAAAACTGCTAGAATATATTGCATTCTCTGTGTTATTCACAATATTCCGTTTCTCAAAGTTTTTATGGAAAGTAAGTTTTGTTGTCGAGGATTATTGAGAGGAATAGTTCTAGATTGGCTAATTAAGAGGAAGATTATGAGTTTATAAGTAAGGAACACTATCTCCATTGGTATTAGGTCATTTGGAGAAACCAAAAGTAAAACCACGAGAACTTATGCTCAAAGTAGACAATATTATACCCTTGTGGAGAGTCGTGGTTTCTAACATAGTATCAAAGTCATGTCCTTAACTTAGTCATGCTAATCAAATCCTTAAGTGTCGAACAAAAATGTTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAAATGTTGTGAGTTTCAAAGGTGTAGTCAAAAGTGACTCAAGTGTCAAACAAAACAAAAGGTGTATTTTGTTCAAGTGCTCTAGAGAAGGAGTCGAGCCTTGATTAAGGAGAGGTTGTTCGAGCTCCAGGTGTACTTTGTTCAAGGGAAGGGATTGTTGAGGATTATTGAGAGTAGTCTCACATTGGCTAATTAAGAGGAAAGATCATACTCTAGTAGATATTGTTCTCTTTGAGCTTTCACTTTCATGCTTCCTCTCAAGGTCTTAAAACACGTCTATTAGGAAGAGGTTTCCATACCCCTATAAGGAATGCTTTGTTCTCCTCTCCAACCCATGTGGAATCTCACAATCCACCCCTCTTGGGGGCCCAACGTTCTCGCTGGCACACTGCTCGGTGTCTAGCTCTGATACGATTTGTAACAGTCCAAGCTCACCGCTAGTAAATATTGTCCTCTTTGAACTTTCTCTTTCGGGCTTCCCCTTACAATATTAAAACACGTATGTTAGGAAGAGGTTTTCACACCCTGATAAAAAATACTTTGTTCTCCTCTCCAACTGATGTAGGGATCTCACAAGTATAAAGTCAAACAAATAGATGGTCATTTTGGTTTAGAATAACCGGTTGGTTTCTCGATCAATGTAGGAGATAGAAGTAAGATTTAAGCTATAGATTTTTTAATACCATATTCCAAGAACACCATAATATGCTTGTTTTTGTGGACCTATTACTTTTATTGTACATGACTGACTGCATGGATTAGCTCAATGTACATGCATTAAGTGAATTTGAAGGCTCTTGTGGTCTTCGGTTCTCATGGCTGCCTTTGATGCTGCAATTAAGATGGTTCCTCAACCTCCATAATCAAGAAGCCAAAGAGAAAACATTCCATCTGCAATGCTCTTCGATCAAGTTACTCACCGATCCCGTTTATGTGGATTACTTATATCACTCGGTGTATTTTAACGATTGTCTTATTGTATCTATTGCTGATCATTGATTTCTCTTGTCGTCGAGTCTCGAACATAAGGAGAATCCTTCCTACATTTTGAGAAGTTCTTTGAGGAGACTATCATCACGAGACTAGTGTTTGTGCAAGTACTTGAATTTGTATCTCATGGTTGTTATGGGCATGTGAATCGTTTAATCTACATCCAACGGTTATTAAAGAGTTGTCAC

mRNA sequence

GGTTTCCCCGCTTGGCCGTTCAGTCTCTGCTCCAGCGTCTCTGCACCAGCGTCTCTCCAGAGGTATCCTTGTTGCTCGAAGGTTTCAACAATGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGGTGACCTCCATTGCACTTAGGAGGGGTGCCCGCCTAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTTAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCTTACACCAATAACACATTTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGGGGAAGGTTATTCTTGAAGCTCCTACTCGTCCCCCACCTGCGCCTACTCTTGTTCCTCAATGTTCTTTGCATTGTGTGATAGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGGGGTCGGATCAACACTTGGAGCTATTTCATTTTCATTTTAATCCCAATTTTTGGTTCTGTTACCCATCAATTAAAACTGCTAGAATATATTGCATTCTCTGTGTTATTCACAATATTCCGTTTCTCAAAGTTTTTATGGAAAGTAAGTTTTGTTGTCGAGGATTATTGAGAGGAATAGTTCTAGATTGGCTAATTAAGAGGAAGATTATGAGTTTATAAGTAAGGAACACTATCTCCATTGGTATTAGGTCATTTGGAGAAACCAAAAGTAAAACCACGAGAACTTATGCTCAAAGTAGACAATATTATACCCTTGTGGAGAGTCGTGGTTTCTAACATAGTATCAAAGTCATGTCCTTAACTTAGTCATGCTAATCAAATCCTTAAGTGTCGAACAAAAATGTTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAAATGTTGTGAGTTTCAAAGGTGTAGTCAAAAGTGACTCAAGTGTCAAACAAAACAAAAGGTGTATTTTGTTCAAGTGCTCTAGAGAAGGAGTCGAGCCTTGATTAAGGAGAGGTTGTTCGAGCTCCAGGTGTACTTTGTTCAAGGGAAGGGATTGTTGAGGATTATTGAGAGTAGTCTCACATTGGCTAATTAAGAGGAAAGATCATACTCTAGTAGATATTGTTCTCTTTGAGCTTTCACTTTCATGCTTCCTCTCAAGGTCTTAAAACACGTCTATTAGGAAGAGGTTTCCATACCCCTATAAGGAATGCTTTGTTCTCCTCTCCAACCCATGTGGAATCTCACAATCCACCCCTCTTGGGGGCCCAACGTTCTCGCTGGCACACTGCTCGGTGTCTAGCTCTGATACGATTTGTAACAGTCCAAGCTCACCGCTAGTAAATATTGTCCTCTTTGAACTTTCTCTTTCGGGCTTCCCCTTACAATATTAAAACACGTATGTTAGGAAGAGGTTTTCACACCCTGATAAAAAATACTTTGTTCTCCTCTCCAACTGATGTAGGGATCTCACAAGTATAAAGTCAAACAAATAGATGGTCATTTTGGTTTAGAATAACCGGTTGGTTTCTCGATCAATGTAGGAGATAGAAGTAAGATTTAAGCTATAGATTTTTTAATACCATATTCCAAGAACACCATAATATGCTTGTTTTTGTGGACCTATTACTTTTATTGTACATGACTGACTGCATGGATTAGCTCAATGTACATGCATTAAGTGAATTTGAAGGCTCTTGTGGTCTTCGGTTCTCATGGCTGCCTTTGATGCTGCAATTAAGATGGTTCCTCAACCTCCATAATCAAGAAGCCAAAGAGAAAACATTCCATCTGCAATGCTCTTCGATCAAGTTACTCACCGATCCCGTTTATGTGGATTACTTATATCACTCGGTGTATTTTAACGATTGTCTTATTGTATCTATTGCTGATCATTGATTTCTCTTGTCGTCGAGTCTCGAACATAAGGAGAATCCTTCCTACATTTTGAGAAGTTCTTTGAGGAGACTATCATCACGAGACTAGTGTTTGTGCAAGTACTTGAATTTGTATCTCATGGTTGTTATGGGCATGTGAATCGTTTAATCTACATCCAACGGTTATTAAAGAGTTGTCAC

Coding sequence (CDS)

ATGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGCGAGTTCTGTGGAAAGTATGCCGTGAAGAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGTGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCAAGTGCCGTGACCGTTCGGAGCACGATCCGAAGGTTGGTGACCTCCATTGCACTTAGGAGGGGTGCCCGCCTAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTTAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCTTACACCAATAACACATTTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGGGGAAGGTTATTCTTGAAGCTCCTACTCGTCCCCCACCTGCGCCTACTCTTGTTCCTCAATGTTCTTTGCATTGTGTGATAGTGTTCTGA

Protein sequence

MKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLVTSIALRRGARLRLDCLRFASAPPPLLRLVQRRRLRSLLNARLLKMPCLLISYTNNTFSTDYVPTVLGNFSADVLVNRQFLIRASRTLLGKVILEAPTRPPPAPTLVPQCSLHCVIVF
Homology
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BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.1e-39
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYT+NTASAVTVRSTIRRL
Sbjct: 67 GAYTMNTASAVTVRSTIRRL 86

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BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.1e-39
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYT+NTASAVTVRSTIRRL
Sbjct: 67 GAYTMNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNTASAVTVRSTIRRL
Sbjct: 67 GAYTLNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match: Q8RXU5 (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          K GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYT+NTASAVTVRSTIRRL
Sbjct: 67 GAYTMNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.3e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNT SAVTVRSTIRRL
Sbjct: 67 GAYTLNTPSAVTVRSTIRRL 86

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BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match: A0A0V0GQG1 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 0 

Query: 2   KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
           KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG
Sbjct: 7   KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 66

Query: 62  GAYTLNTASAVTVRSTIRRL---VTSIALRRGARLRLDCL 99
           GAYTLNTASAVTVRSTIRRL     S  L     ++++CL
Sbjct: 67  GAYTLNTASAVTVRSTIRRLREQTESXTLESECLMQVECL 106

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BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match: A0A1U7XSD1 (60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNTASAVTVRSTIRRL
Sbjct: 67 GAYTLNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match: A0A6J1ICH2 (60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNTASAVTVRSTIRRL
Sbjct: 67 GAYTLNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match: K4CND1 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNTASAVTVRSTIRRL
Sbjct: 67 GAYTLNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match: A0A1U8LTA9 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 6.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYTLNTASAVTVRSTIRRL
Sbjct: 67 GAYTLNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          K GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAG
Sbjct: 7  KVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYT+NTASAVTVRSTIRRL
Sbjct: 67 GAYTMNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-38
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 2  KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAG 61
          KA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAG
Sbjct: 7  KARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAG 66

Query: 62 GAYTLNTASAVTVRSTIRRL 82
          GAYT+NTASAVTVRSTIRRL
Sbjct: 67 GAYTMNTASAVTVRSTIRRL 86

[Close]
BLAST of CmoCh06G012290 vs. TAIR 10
Match: AT2G17800.1 (Arabidopsis RAC-like 1 )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 129 CLLISYTNNTFSTDYVPTVLGNFSADVLVN 159
           CLLISYT+NTF TDYVPTV  NFSA+V+VN
Sbjct: 21  CLLISYTSNTFPTDYVPTVFDNFSANVVVN 50

[Close]
BLAST of CmoCh06G012290 vs. TAIR 10
Match: AT2G17800.2 (Arabidopsis RAC-like 1 )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 129 CLLISYTNNTFSTDYVPTVLGNFSADVLVN 159
           CLLISYT+NTF TDYVPTV  NFSA+V+VN
Sbjct: 21  CLLISYTSNTFPTDYVPTVFDNFSANVVVN 50

[Close]
BLAST of CmoCh06G012290 vs. TAIR 10
Match: AT3G51300.1 (RHO-related protein from plants 1 )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 129 CLLISYTNNTFSTDYVPTVLGNFSADVLVN 159
           CLLISYT+NTF TDYVPTV  NFSA+V+VN
Sbjct: 21  CLLISYTSNTFPTDYVPTVFDNFSANVVVN 50

The following BLAST results are available for this feature:
BLAST of CmoCh06G012290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0DKK18.1e-3997.5060S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06... [more]
P0DKK28.1e-3997.5060S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05... [more]
Q9XHE41.4e-3898.7560S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1[more]
Q8RXU54.0e-3895.0060S ribosomal protein L37a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37AC PE=3 SV=... [more]
Q9ZRS85.3e-3896.2560S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1[more]
BLAST of CmoCh06G012290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0V0GQG14.6e-3784.00Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=3 SV=1[more]
A0A1U7XSD16.1e-37100.0060S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 ... [more]
A0A6J1ICH26.1e-37100.0060S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1[more]
K4CND16.1e-37100.00Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1[more]
A0A1U8LTA96.1e-37100.0060S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV... [more]
BLAST of CmoCh06G012290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60245.12.9e-3995.00Zinc-binding ribosomal protein family protein [more]
AT3G10950.12.4e-3893.75Zinc-binding ribosomal protein family protein [more]
AT2G17800.12.9e-0780.00Arabidopsis RAC-like 1 [more]
AT2G17800.22.9e-0780.00Arabidopsis RAC-like 1 [more]
AT3G51300.12.9e-0780.00RHO-related protein from plants 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 1..85
e-value: 1.1E-38
score: 133.2
IPR002674Ribosomal protein L37aePFAMPF01780Ribosomal_L37aecoord: 2..81
e-value: 9.9E-37
score: 124.9
IPR002674Ribosomal protein L37aeTIGRFAMTIGR00280TIGR00280coord: 2..83
e-value: 9.5E-30
score: 100.8
IPR002674Ribosomal protein L37aeHAMAPMF_00327Ribosomal_L37Aecoord: 1..67
score: 17.392839
NoneNo IPR availablePANTHERPTHR48132ZGC:171772coord: 2..83
NoneNo IPR availablePANTHERPTHR48132:SF260S RIBOSOMAL PROTEIN L37A-2coord: 2..83
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G012290.1CmoCh06G012290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome