CmoCh06G012160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G012160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase ATL4-like
Location	Cmo_Chr06: 9250066 .. 9251097 (-)
RNA-Seq Expression	CmoCh06G012160
Synteny	CmoCh06G012160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCCGCCGCCGCCGCCGTTGCCGGACGCTTTCGGAGGCTCCGTCATTGAGTACTTTTCTTCCTCTCCTCCTCTTCCTTCGGCGATAGCAGCGACGGCAGCGACTCATTCTTCTTCGCTGAAGAATCTCAGTCCTAGCATTTTAATCATTCTTTCGATCCTTGCTTTTACTGCTTTTGCTTCTGTGATTCTCTGCCTCGTTCTGCGATACCTTAACCGGCGGTGTCTTCTCCGTCTATCCGCCGTGCCTGTATCGTCCTCGTCTTCGTCGGTTTCGAGCCGTCGGATTAATCCAGCAGAGCAGAGTACGACTCGGTGTACCAATTCGTTTTCGCCGATCGATACGCTTCCTCTTTTTTCTTTTTCCTCCATCACGCGTCGTTCTTCCACTGCCGCAGCCGATTGCGCCGTTTGTTTGTCAAAATTCGAGGCGGAGGATCAGCTTCGTTTACTTCCGCTCTGCTGCCATGCTTTTCACGCTCAATGCGTCGATACATGGCTTCAATCGAACCAGAGTTGTCCTCTATGCCGCTCCGCCATTTTCGCCTCCGAATCCGACGTGATTAAGGCTTCTATGGCTTCCTACACCGCTGAAGGTCGCGCCGGAGACAGTTTCAGACTCGAGATTGGCAGTATCAGCCGCCGGCAAGGCGCATCCGATTCCACCGACGGAAGGAGATCCTACTCAATAGGATCGTTCGAGTACTTCGTCGAAGAAGATTCAGAGGTAAATTTCACCAATGCTCACAGGAGGAGCGTCTCCGATAAGGAGGACATAGAAGCTCCGCCTCATCCAGAGCGAAGTCTCGCGGCTGAAGTCGGTTCCGGAAGGAGTTGGTTAAAGGACTACGTAGACAGGCTCTCGAATTCCGTTTCATCTCGAGCGCTCTCCTTCCGAGGCTCCGGTAGATTCTTCACCGGAAGCAGCCGTCGAAGTGAGATCGTGGTTGGCGGAGATTGGGAACAGGAGAACAGTCGCGTCGGCGAGGAAATAAGCGAAATGTTCCGGTGGTTCTCAGGGGTATAA

mRNA sequence

ATGGCTTCTCCGCCGCCGCCGCCGTTGCCGGACGCTTTCGGAGGCTCCGTCATTGAGTACTTTTCTTCCTCTCCTCCTCTTCCTTCGGCGATAGCAGCGACGGCAGCGACTCATTCTTCTTCGCTGAAGAATCTCAGTCCTAGCATTTTAATCATTCTTTCGATCCTTGCTTTTACTGCTTTTGCTTCTGTGATTCTCTGCCTCGTTCTGCGATACCTTAACCGGCGGTGTCTTCTCCGTCTATCCGCCGTGCCTGTATCGTCCTCGTCTTCGTCGGTTTCGAGCCGTCGGATTAATCCAGCAGAGCAGAGTACGACTCGGTGTACCAATTCGTTTTCGCCGATCGATACGCTTCCTCTTTTTTCTTTTTCCTCCATCACGCGTCGTTCTTCCACTGCCGCAGCCGATTGCGCCGTTTGTTTGTCAAAATTCGAGGCGGAGGATCAGCTTCGTTTACTTCCGCTCTGCTGCCATGCTTTTCACGCTCAATGCGTCGATACATGGCTTCAATCGAACCAGAGTTGTCCTCTATGCCGCTCCGCCATTTTCGCCTCCGAATCCGACGTGATTAAGGCTTCTATGGCTTCCTACACCGCTGAAGGTCGCGCCGGAGACAGTTTCAGACTCGAGATTGGCAGTATCAGCCGCCGGCAAGGCGCATCCGATTCCACCGACGGAAGGAGATCCTACTCAATAGGATCGTTCGAGTACTTCGTCGAAGAAGATTCAGAGGTAAATTTCACCAATGCTCACAGGAGGAGCGTCTCCGATAAGGAGGACATAGAAGCTCCGCCTCATCCAGAGCGAAGTCTCGCGGCTGAAGTCGGTTCCGGAAGGAGTTGGTTAAAGGACTACGTAGACAGGCTCTCGAATTCCGTTTCATCTCGAGCGCTCTCCTTCCGAGGCTCCGGTAGATTCTTCACCGGAAGCAGCCGTCGAAGTGAGATCGTGGTTGGCGGAGATTGGGAACAGGAGAACAGTCGCGTCGGCGAGGAAATAAGCGAAATGTTCCGGTGGTTCTCAGGGGTATAA

Coding sequence (CDS)

ATGGCTTCTCCGCCGCCGCCGCCGTTGCCGGACGCTTTCGGAGGCTCCGTCATTGAGTACTTTTCTTCCTCTCCTCCTCTTCCTTCGGCGATAGCAGCGACGGCAGCGACTCATTCTTCTTCGCTGAAGAATCTCAGTCCTAGCATTTTAATCATTCTTTCGATCCTTGCTTTTACTGCTTTTGCTTCTGTGATTCTCTGCCTCGTTCTGCGATACCTTAACCGGCGGTGTCTTCTCCGTCTATCCGCCGTGCCTGTATCGTCCTCGTCTTCGTCGGTTTCGAGCCGTCGGATTAATCCAGCAGAGCAGAGTACGACTCGGTGTACCAATTCGTTTTCGCCGATCGATACGCTTCCTCTTTTTTCTTTTTCCTCCATCACGCGTCGTTCTTCCACTGCCGCAGCCGATTGCGCCGTTTGTTTGTCAAAATTCGAGGCGGAGGATCAGCTTCGTTTACTTCCGCTCTGCTGCCATGCTTTTCACGCTCAATGCGTCGATACATGGCTTCAATCGAACCAGAGTTGTCCTCTATGCCGCTCCGCCATTTTCGCCTCCGAATCCGACGTGATTAAGGCTTCTATGGCTTCCTACACCGCTGAAGGTCGCGCCGGAGACAGTTTCAGACTCGAGATTGGCAGTATCAGCCGCCGGCAAGGCGCATCCGATTCCACCGACGGAAGGAGATCCTACTCAATAGGATCGTTCGAGTACTTCGTCGAAGAAGATTCAGAGGTAAATTTCACCAATGCTCACAGGAGGAGCGTCTCCGATAAGGAGGACATAGAAGCTCCGCCTCATCCAGAGCGAAGTCTCGCGGCTGAAGTCGGTTCCGGAAGGAGTTGGTTAAAGGACTACGTAGACAGGCTCTCGAATTCCGTTTCATCTCGAGCGCTCTCCTTCCGAGGCTCCGGTAGATTCTTCACCGGAAGCAGCCGTCGAAGTGAGATCGTGGTTGGCGGAGATTGGGAACAGGAGAACAGTCGCGTCGGCGAGGAAATAAGCGAAATGTTCCGGTGGTTCTCAGGGGTATAA

Protein sequence

MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVEEDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSFRGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV

Homology

[Close]

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.8e-73
Identity = 179/334 (53.59%), Postives = 224/334 (67.07%), Query Frame = 0


Query: 28  PSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRCLLRLSAVPVS 87
           PS       +HSSSL +L PS+L+I+ IL  T   SV +C +LR LN RC  R S +P+S
Sbjct: 7   PSHGGGNYDSHSSSLDSLKPSVLVIILILLMTLLISVSICFLLRCLN-RCSHR-SVLPLS 66

Query: 88  SSSS----SVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSSTA-AADCAVCLS 147
           SSSS    +  SRR +    S    T   S +D+LP+F FSS+TRRSS+  + DCAVCLS
Sbjct: 67  SSSSVATVTSDSRRFSGHRVSPE--TERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLS 126

Query: 148 KFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFASESDVIKASMASYTAEGR 207
           KFE EDQLRLLPLCCHAFHA C+D WL SNQ+CPLCRS +FASESD++K+     +  G 
Sbjct: 127 KFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGG 186

Query: 208 AGDSFRLEIGSISRRQGA--SDSTDGRRSYSIGSFEYFVEE-DSEVNFTNAHRRSVSDKE 267
             +SFRLEIGSISRR+     +S +  R+YSIGSF+Y V++ DSE++ +N +R    D  
Sbjct: 187 GENSFRLEIGSISRRRQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDAT 246

Query: 268 DIEA--------PPHPERSLAAEVGS--GRSWLKDYVDRLSNSVSSRALSFRGSGRFFTG 327
              A        P   E SLAA++G+   RSWLKDYVDRLS  +SSRA+SFR SGRFFTG
Sbjct: 247 TTTATATAVTTNPTSFEASLAADIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTG 306

Query: 328 SSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           SSRRSE +   D E  ++  GEEISE+FRW SGV
Sbjct: 307 SSRRSEELTVMDLEANHA--GEEISELFRWLSGV 334

[Close]

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-16
Identity = 84/303 (27.72%), Postives = 130/303 (42.90%), Query Frame = 0


Query: 23  SSPPLPSAI-----AATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRC 82
           SS P P  +      +++++ S     +SP IL I+ +L+   F   IL L++RY  ++ 
Sbjct: 22  SSAPSPITLNHQLTDSSSSSSSGGNNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKK 81

Query: 83  LLRLSAVPVSS------SSSSVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSS 142
              LS+ P  S      S S    R++           +  + ID LP+F +  I  + +
Sbjct: 82  RSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQ-ALIDALPVFLYKEI--KGT 141

Query: 143 TAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFA------- 202
               DCAVCL +F  +D+LRLLP C HAFH  C+DTWL SN +CPLCR  +F+       
Sbjct: 142 KEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFSLGHQFEY 201

Query: 203 -----------SESDVIKASMASYTAEGRAGDS-FRLEIGSISRR--------------Q 262
                           ++ S     AE   G   F + +G                   +
Sbjct: 202 PDFNFGFFAGDDGGGGVRVSPVQKPAENEIGKRVFSVRLGKFRSSNIVNNGEVVVGGGGE 261

Query: 263 GASDSTDGRRSYSIGSFEYFVEEDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSG 282
            +S S D RR +S+GS++Y V E   V     +   + + +D+E      RS        
Sbjct: 262 TSSSSLDNRRCFSMGSYQYIVAESDLVVALCPNNEGLKNNKDVEGKKINMRSKGESFSVS 321

[Close]

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.7e-16
Identity = 61/173 (35.26%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 24  SPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYL----NRRCLL 83
           SPP P           SS   +SP++L ++ ILA   F S +L L++R+L    +     
Sbjct: 28  SPPSPPP--------PSSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASS 87

Query: 84  RLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSSTAAA---- 143
           R +  P  S+S ++  +       + +    +F  ID LP+F +  I   +         
Sbjct: 88  RSNRFPEISTSDALQRQLQQLFHLNDSGLDQAF--IDALPVFHYKEIVGSAGGGGGNGAA 147

Query: 144 ----DCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFA 185
               DCAVCL +F  +D+LRLLP+C HAFH  C+DTWLQSN +CPLCR  +F+
Sbjct: 148 QEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFS 190

[Close]

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-15
Identity = 88/299 (29.43%), Postives = 137/299 (45.82%), Query Frame = 0


Query: 22  SSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRCLLRL 81
           SSSPP P     +  + S+    ++P+IL+I+ IL+   F S +L +++++L        
Sbjct: 16  SSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL-------- 75

Query: 82  SAVPVSSSSSSVSSRRINPAEQSTTRCTN------SFSPIDTLPLFSFSSITRRSSTAAA 141
             +  S  S       +   +    +  N        S IDTLP+F + SI      +  
Sbjct: 76  --LTPSRESREDYFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIV-GLKISPF 135

Query: 142 DCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFASESDVIKASMA 201
           DC VCL +FE ED+LRLLP C HAFH +C+DTWL S+ +CPLCRS +           ++
Sbjct: 136 DCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNL-----------LS 195

Query: 202 SYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVEEDSEVNFTNAHRRSV 261
            +++      S+ L + S    Q + D      S S     Y V  DSE     + R+S 
Sbjct: 196 GFSSHHNLSSSYLLVLES---EQSSRDMVPVLESNS--QLGYDVNNDSESTRIRSGRKSC 255

Query: 262 SDKEDIEAPPHPERSLAAEVGSGRSWLKDYV----DRLSNSVSSRALSFRGSGRFFTGS 311
               D++     E+ +  EV  G+    D+V    D+  NS+S  + +  G      GS
Sbjct: 256 DPDGDMDG--LDEKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGS 285

[Close]

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot
Match: Q9FHG8 (Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.3e-15
Identity = 50/136 (36.76%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 45  LSPSILIILSILAFTAFASVILCLVLRYLNR-RCLLRLSAVPVSSSSSSVSSRRINPAEQ 104
           +SP +L+ +++L+   F + ++ L++++L+R +  L  +   ++ SS+++  R       
Sbjct: 32  ISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFNL 91

Query: 105 STTRCTNSFSPIDTLPLFSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQ 164
                  SF  ID LPL  + ++        +DCAVCL +F AED+LRLLP C HAFH +
Sbjct: 92  HDAEIDQSF--IDALPLLHYKTMIGLRHD-LSDCAVCLREFTAEDELRLLPKCSHAFHVE 151

Query: 165 CVDTWLQSNQSCPLCR 180
           C+DTWL +N +CPLCR
Sbjct: 152 CIDTWLLTNSTCPLCR 164

[Close]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL
Match: A0A6J1F7D5 (E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita moschata OX=3662 GN=LOC111442807 PE=4 SV=1)

HSP 1 Score: 648.7 bits (1672), Expect = 1.4e-182
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60
           MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA
Sbjct: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60

Query: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120
           FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL
Sbjct: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120

Query: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180
           FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS
Sbjct: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180

Query: 181 AIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVE 240
           AIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVE
Sbjct: 181 AIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVE 240

Query: 241 EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF 300
           EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF
Sbjct: 241 EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF 300

Query: 301 RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV
Sbjct: 301 RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 343

[Close]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL
Match: A0A6J1IIJ4 (E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita maxima OX=3661 GN=LOC111473488 PE=4 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 5.0e-180
Identity = 338/343 (98.54%), Postives = 340/343 (99.13%), Query Frame = 0


Query: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60
           MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFT 
Sbjct: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTV 60

Query: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120
           FASVILCLVLRYLNRRCLLRLSAVPVSSSS SVSSRRINPAEQSTTRCTNSFSPIDTLPL
Sbjct: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSLSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120

Query: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180
           FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS
Sbjct: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180

Query: 181 AIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVE 240
           AIFASESDVIKASMASY+AEGRAGDSFRLEIG+ISRRQGASDS DGRRSYSIGSFEYFVE
Sbjct: 181 AIFASESDVIKASMASYSAEGRAGDSFRLEIGNISRRQGASDSADGRRSYSIGSFEYFVE 240

Query: 241 EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF 300
           EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF
Sbjct: 241 EDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSGRSWLKDYVDRLSNSVSSRALSF 300

Query: 301 RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV
Sbjct: 301 RGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 343

[Close]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL
Match: A0A5D3D0U7 (E3 ubiquitin-protein ligase ATL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003160 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.5e-155
Identity = 302/347 (87.03%), Postives = 319/347 (91.93%), Query Frame = 0


Query: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60
           MASPPPPPLPD F GS I+Y SSSPPLP   +  +++HSSSLKNLSPSILIIL+ILAFTA
Sbjct: 1   MASPPPPPLPDDFSGSAIDYVSSSPPLPQ--SPVSSSHSSSLKNLSPSILIILTILAFTA 60

Query: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120
           FASVILCLVLRYLNRRCLLRLSAV  SSSSSSVSSRRI PAEQ+  RCTNSFSPI++LPL
Sbjct: 61  FASVILCLVLRYLNRRCLLRLSAVSGSSSSSSVSSRRIIPAEQTAVRCTNSFSPIESLPL 120

Query: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180
           FSFSS+TRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS
Sbjct: 121 FSFSSVTRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180

Query: 181 AIFASESDVIKASMASYTAEGR-AGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFV 240
           AIFASESDV+KASMASY AEGR  GDSFRLEIGSISRRQ  SDS +GRRSYSIGSFEYFV
Sbjct: 181 AIFASESDVMKASMASYAAEGRGGGDSFRLEIGSISRRQAPSDSGEGRRSYSIGSFEYFV 240

Query: 241 EEDSEVNFTNAHRRSVSDKEDIEAP---PHPERSLAAEVGSGRSWLKDYVDRLSNSVSSR 300
           EEDSEVNFTNAHRRSVSDKEDIEAP      ERSLAA+VGSGR+WLKDYVDRLSNSVSSR
Sbjct: 241 EEDSEVNFTNAHRRSVSDKEDIEAPISAVSTERSLAADVGSGRNWLKDYVDRLSNSVSSR 300

Query: 301 ALSFRGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           ALSFRGSGRFFTGSSRRSE+ V G+WEQENSRVGEEISE+FRWFSGV
Sbjct: 301 ALSFRGSGRFFTGSSRRSEVTVAGEWEQENSRVGEEISELFRWFSGV 345

[Close]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL
Match: A0A1S3AVN9 (E3 ubiquitin-protein ligase ATL4 OS=Cucumis melo OX=3656 GN=LOC103483437 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 3.2e-155
Identity = 301/347 (86.74%), Postives = 319/347 (91.93%), Query Frame = 0


Query: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60
           MASPPPPPLPD F GS I+Y SSSPPLP   +  +++HSSSLKNLSPSILIIL+ILAFTA
Sbjct: 1   MASPPPPPLPDDFSGSAIDYVSSSPPLPQ--SPVSSSHSSSLKNLSPSILIILTILAFTA 60

Query: 61  FASVILCLVLRYLNRRCLLRLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPL 120
           FASVILCLVLRYLNRRCLLRLSAV  SSSSSSVSSRRI PAEQ+  RCTNSFSPI++LPL
Sbjct: 61  FASVILCLVLRYLNRRCLLRLSAVSGSSSSSSVSSRRIIPAEQTAVRCTNSFSPIESLPL 120

Query: 121 FSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180
           FSFSS+TRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS
Sbjct: 121 FSFSSVTRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRS 180

Query: 181 AIFASESDVIKASMASYTAEGR-AGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFV 240
           AIFASESDV+KASMASY AEGR  GDSFRLEIGSISRRQ  SDS +GRRSYSIGSFEYFV
Sbjct: 181 AIFASESDVMKASMASYAAEGRGGGDSFRLEIGSISRRQAPSDSGEGRRSYSIGSFEYFV 240

Query: 241 EEDSEVNFTNAHRRSVSDKEDIEAP---PHPERSLAAEVGSGRSWLKDYVDRLSNSVSSR 300
           EEDSEVNFTNAHRRSVSDKEDIEAP      +RSLAA+VGSGR+WLKDYVDRLSNSVSSR
Sbjct: 241 EEDSEVNFTNAHRRSVSDKEDIEAPISAVSTDRSLAADVGSGRNWLKDYVDRLSNSVSSR 300

Query: 301 ALSFRGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           ALSFRGSGRFFTGSSRRSE+ V G+WEQENSRVGEEISE+FRWFSGV
Sbjct: 301 ALSFRGSGRFFTGSSRRSEVTVAGEWEQENSRVGEEISELFRWFSGV 345

[Close]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL
Match: A0A6J1IZ16 (E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita maxima OX=3661 GN=LOC111479739 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.4e-153
Identity = 302/349 (86.53%), Postives = 317/349 (90.83%), Query Frame = 0


Query: 1   MASPPPPPLPDAFGGSVIEYFSSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTA 60
           MAS PPPPLPDAFGGS+I+Y SSSPPLPS   AT  +HSSSLKNLSPSILIIL++LA TA
Sbjct: 1   MAS-PPPPLPDAFGGSIIDYVSSSPPLPS---ATVVSHSSSLKNLSPSILIILTVLALTA 60

Query: 61  FASVILCLVLRYLNRRCLLRLSAVPVS---SSSSSVSSRRINPAEQSTTRCTNSFSPIDT 120
           FASVILCLVLRYLNRRCLLRLSAVP S   SSSSSVS R I P EQS  RCTNSFSPID+
Sbjct: 61  FASVILCLVLRYLNRRCLLRLSAVPGSSSTSSSSSVSRRHIIPVEQSAVRCTNSFSPIDS 120

Query: 121 LPLFSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPL 180
           LPLFSFSS+TRRSSTA ADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPL
Sbjct: 121 LPLFSFSSVTRRSSTAVADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPL 180

Query: 181 CRSAIFASESDVIKASMASYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEY 240
           CRSAIFASESDV+KASMASY AEGR GDSFRLEIGSISRRQ  S+S +GRRSYSIGSFEY
Sbjct: 181 CRSAIFASESDVMKASMASYAAEGRGGDSFRLEIGSISRRQIPSESGEGRRSYSIGSFEY 240

Query: 241 FVEEDSEVNFTNAHRRSVSDKEDIEAP---PHPERSLAAEVGSGRSWLKDYVDRLSNSVS 300
           FVEEDSEVNFT+AHRRSVSDKEDIEAP      E+SLAAEVGSGR+WLKDYVDRLSNSVS
Sbjct: 241 FVEEDSEVNFTHAHRRSVSDKEDIEAPVSAVSTEQSLAAEVGSGRNWLKDYVDRLSNSVS 300

Query: 301 SRALSFRGSGRFFTGSSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           SRALSFRGSGRFFTGSSRRSE+ V GDWEQENSRVGEEISE+FRWFSGV
Sbjct: 301 SRALSFRGSGRFFTGSSRRSEVTVVGDWEQENSRVGEEISELFRWFSGV 345

[Close]

BLAST of CmoCh06G012160 vs. TAIR 10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4 )

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-74
Identity = 179/334 (53.59%), Postives = 224/334 (67.07%), Query Frame = 0


Query: 28  PSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRCLLRLSAVPVS 87
           PS       +HSSSL +L PS+L+I+ IL  T   SV +C +LR LN RC  R S +P+S
Sbjct: 7   PSHGGGNYDSHSSSLDSLKPSVLVIILILLMTLLISVSICFLLRCLN-RCSHR-SVLPLS 66

Query: 88  SSSS----SVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSSTA-AADCAVCLS 147
           SSSS    +  SRR +    S    T   S +D+LP+F FSS+TRRSS+  + DCAVCLS
Sbjct: 67  SSSSVATVTSDSRRFSGHRVSPE--TERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLS 126

Query: 148 KFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFASESDVIKASMASYTAEGR 207
           KFE EDQLRLLPLCCHAFHA C+D WL SNQ+CPLCRS +FASESD++K+     +  G 
Sbjct: 127 KFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGG 186

Query: 208 AGDSFRLEIGSISRRQGA--SDSTDGRRSYSIGSFEYFVEE-DSEVNFTNAHRRSVSDKE 267
             +SFRLEIGSISRR+     +S +  R+YSIGSF+Y V++ DSE++ +N +R    D  
Sbjct: 187 GENSFRLEIGSISRRRQTPIPESVEQHRTYSIGSFDYIVDDVDSEISESNFNRGKQEDAT 246

Query: 268 DIEA--------PPHPERSLAAEVGS--GRSWLKDYVDRLSNSVSSRALSFRGSGRFFTG 327
              A        P   E SLAA++G+   RSWLKDYVDRLS  +SSRA+SFR SGRFFTG
Sbjct: 247 TTTATATAVTTNPTSFEASLAADIGNDGSRSWLKDYVDRLSRGISSRAMSFRSSGRFFTG 306

Query: 328 SSRRSEIVVGGDWEQENSRVGEEISEMFRWFSGV 344
           SSRRSE +   D E  ++  GEEISE+FRW SGV
Sbjct: 307 SSRRSEELTVMDLEANHA--GEEISELFRWLSGV 334

[Close]

BLAST of CmoCh06G012160 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-17
Identity = 84/303 (27.72%), Postives = 130/303 (42.90%), Query Frame = 0


Query: 23  SSPPLPSAI-----AATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRC 82
           SS P P  +      +++++ S     +SP IL I+ +L+   F   IL L++RY  ++ 
Sbjct: 22  SSAPSPITLNHQLTDSSSSSSSGGNNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKK 81

Query: 83  LLRLSAVPVSS------SSSSVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSS 142
              LS+ P  S      S S    R++           +  + ID LP+F +  I  + +
Sbjct: 82  RSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQ-ALIDALPVFLYKEI--KGT 141

Query: 143 TAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFA------- 202
               DCAVCL +F  +D+LRLLP C HAFH  C+DTWL SN +CPLCR  +F+       
Sbjct: 142 KEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFSLGHQFEY 201

Query: 203 -----------SESDVIKASMASYTAEGRAGDS-FRLEIGSISRR--------------Q 262
                           ++ S     AE   G   F + +G                   +
Sbjct: 202 PDFNFGFFAGDDGGGGVRVSPVQKPAENEIGKRVFSVRLGKFRSSNIVNNGEVVVGGGGE 261

Query: 263 GASDSTDGRRSYSIGSFEYFVEEDSEVNFTNAHRRSVSDKEDIEAPPHPERSLAAEVGSG 282
            +S S D RR +S+GS++Y V E   V     +   + + +D+E      RS        
Sbjct: 262 TSSSSLDNRRCFSMGSYQYIVAESDLVVALCPNNEGLKNNKDVEGKKINMRSKGESFSVS 321

[Close]

BLAST of CmoCh06G012160 vs. TAIR 10
Match: AT5G40250.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-17
Identity = 61/173 (35.26%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 24  SPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYL----NRRCLL 83
           SPP P           SS   +SP++L ++ ILA   F S +L L++R+L    +     
Sbjct: 28  SPPSPPP--------PSSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASS 87

Query: 84  RLSAVPVSSSSSSVSSRRINPAEQSTTRCTNSFSPIDTLPLFSFSSITRRSSTAAA---- 143
           R +  P  S+S ++  +       + +    +F  ID LP+F +  I   +         
Sbjct: 88  RSNRFPEISTSDALQRQLQQLFHLNDSGLDQAF--IDALPVFHYKEIVGSAGGGGGNGAA 147

Query: 144 ----DCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFA 185
               DCAVCL +F  +D+LRLLP+C HAFH  C+DTWLQSN +CPLCR  +F+
Sbjct: 148 QEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFS 190

[Close]

BLAST of CmoCh06G012160 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 4.5e-16
Identity = 88/299 (29.43%), Postives = 137/299 (45.82%), Query Frame = 0


Query: 22  SSSPPLPSAIAATAATHSSSLKNLSPSILIILSILAFTAFASVILCLVLRYLNRRCLLRL 81
           SSSPP P     +  + S+    ++P+IL+I+ IL+   F S +L +++++L        
Sbjct: 16  SSSPPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL-------- 75

Query: 82  SAVPVSSSSSSVSSRRINPAEQSTTRCTN------SFSPIDTLPLFSFSSITRRSSTAAA 141
             +  S  S       +   +    +  N        S IDTLP+F + SI      +  
Sbjct: 76  --LTPSRESREDYFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIV-GLKISPF 135

Query: 142 DCAVCLSKFEAEDQLRLLPLCCHAFHAQCVDTWLQSNQSCPLCRSAIFASESDVIKASMA 201
           DC VCL +FE ED+LRLLP C HAFH +C+DTWL S+ +CPLCRS +           ++
Sbjct: 136 DCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNL-----------LS 195

Query: 202 SYTAEGRAGDSFRLEIGSISRRQGASDSTDGRRSYSIGSFEYFVEEDSEVNFTNAHRRSV 261
            +++      S+ L + S    Q + D      S S     Y V  DSE     + R+S 
Sbjct: 196 GFSSHHNLSSSYLLVLES---EQSSRDMVPVLESNS--QLGYDVNNDSESTRIRSGRKSC 255

Query: 262 SDKEDIEAPPHPERSLAAEVGSGRSWLKDYV----DRLSNSVSSRALSFRGSGRFFTGS 311
               D++     E+ +  EV  G+    D+V    D+  NS+S  + +  G      GS
Sbjct: 256 DPDGDMDG--LDEKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGS 285

[Close]

BLAST of CmoCh06G012160 vs. TAIR 10
Match: AT5G57750.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-16
Identity = 50/136 (36.76%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 45  LSPSILIILSILAFTAFASVILCLVLRYLNR-RCLLRLSAVPVSSSSSSVSSRRINPAEQ 104
           +SP +L+ +++L+   F + ++ L++++L+R +  L  +   ++ SS+++  R       
Sbjct: 32  ISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFNL 91

Query: 105 STTRCTNSFSPIDTLPLFSFSSITRRSSTAAADCAVCLSKFEAEDQLRLLPLCCHAFHAQ 164
                  SF  ID LPL  + ++        +DCAVCL +F AED+LRLLP C HAFH +
Sbjct: 92  HDAEIDQSF--IDALPLLHYKTMIGLRHD-LSDCAVCLREFTAEDELRLLPKCSHAFHVE 151

Query: 165 CVDTWLQSNQSCPLCR 180
           C+DTWL +N +CPLCR
Sbjct: 152 CIDTWLLTNSTCPLCR 164

The following BLAST results are available for this feature:

BLAST of CmoCh06G012160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY41	1.8e-73	53.59	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]
Q8GW38	2.6e-16	27.72	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9FL07	5.7e-16	35.26	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q9ZV53	6.3e-15	29.43	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q9FHG8	8.3e-15	36.76	Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana OX=3702 GN=ATL50 P...	[more]

BLAST of CmoCh06G012160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7D5	1.4e-182	100.00	E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita moschata OX=3662 GN=LOC111442...	[more]
A0A6J1IIJ4	5.0e-180	98.54	E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita maxima OX=3661 GN=LOC11147348...	[more]
A0A5D3D0U7	1.5e-155	87.03	E3 ubiquitin-protein ligase ATL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3AVN9	3.2e-155	86.74	E3 ubiquitin-protein ligase ATL4 OS=Cucumis melo OX=3656 GN=LOC103483437 PE=4 SV...	[more]
A0A6J1IZ16	1.4e-153	86.53	E3 ubiquitin-protein ligase ATL4-like OS=Cucurbita maxima OX=3661 GN=LOC11147973...	[more]

BLAST of CmoCh06G012160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60220.1	1.2e-74	53.59	TOXICOS EN LEVADURA 4	[more]
AT1G23980.1	1.8e-17	27.72	RING/U-box superfamily protein	[more]
AT5G40250.1	4.1e-17	35.26	RING/U-box superfamily protein	[more]
AT2G18650.1	4.5e-16	29.43	RING/U-box superfamily protein	[more]
AT5G57750.1	5.9e-16	36.76	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 137..178 e-value: 1.8E-6 score: 37.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 136..179 e-value: 5.5E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 137..179 score: 12.341748
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 110..188 e-value: 2.9E-20 score: 73.3
None	No IPR available	PANTHER	PTHR45768:SF16	E3 UBIQUITIN-PROTEIN LIGASE ATL4	coord: 29..325
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 29..325
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 136..179 e-value: 2.10806E-17 score: 72.7197
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 118..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G012160.1	CmoCh06G012160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031625	ubiquitin protein ligase binding