CmoCh06G012150 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G012150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	10 kDa chaperonin
Location	Cmo_Chr06: 9245490 .. 9247953 (+)
RNA-Seq Expression	CmoCh06G012150
Synteny	CmoCh06G012150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCCTTGGAATTATTAAGAACGCTCTAGAATTTCTCTTCCCTCGCTAAAACGTTTCTCCCGCTCACCCTCATTCGCCTCCACAGAACTTTGCTTCTTCGACTCACTATCCATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAAGCCCTTTAACGACTGGGCTAATTCATCTTCTGTATCTTCCCGGCAACAAATCACTGGCACGCTGAGAACTCGTTCTTTTTCTCGATCAATTCTTGTCCCATTCCGTCTTCTGAATTTCTGGATGATTTTGCTTCTTGACTTTTGAATAGGTGGATTCCGAAGAAGTTCGTTGAAAGTCAGCGCGGTTTCTAAAAAATGGGAGCCTACGAAGGTTTTTCTCTTTCTTTCTTTCGAAATCTCCTCAGCGATTTTAGATTTTCTCGTTCTTATGTGCTATTGAGCTTGTGATTTGGATTTCAATGCTTATTCTTGTTATTTTATGATGCGCGTGGATTTCAGGTTGTTCCTCAAGCTGATAGAGTTCTCCTCCGTCTTGAGGAGCTTCCCGAGGTAAGCTTAAGCTTAAGAAAATGGCGAATGAATGTGTAGTAGAAATTGTTGGATGTATTGAAAACTGTAAAACATTCCATAAATTTGAGATGTTCTGTTGCAGAAATCAGCTGGTGGAGTTTTGCTTCCCAAATCAGCCGTCAAATTTGAGCGACACCTTGTAGGAGAGGTGAGACAATTCCTTCCATTACAGTTGCTATTTTCTCTGTTTTAATTCCTGTGAGGAAACCTGTTTGATAATCAACACAATGTTTCTATCAGATTCTATCCATTGGATCAGAAGTTGGAGGAAGTGATCTTGCACCTGGAAAGAAGGTAATTAAGGTTTATTCGTTTTATAAATTTGGGTTTCTTTTTCAGCAATGGTGAGTTCGTAGTGTTCTTATTTAAGGGTAGCAGTGTTCATAAGCACCTTTAGAAAGTACTTTTAAATGGTCTTTGCAGTGTTTTTTTAAAATCTTCAATGAACTCTGTTAGCTATGGATCGAAACACAAAATTTTAAGGCGATACGAATCCTTTTCGATCGGAGGTTCAAATCTCCATGTGAAGGATTCGGAGGTTCAAATCTCCATATTTCACATTTGTTGTACTGAAAAAGCATTATTTGTTGTCCTAAAATGGTGCCAAATGCACCATTGTTATTGTGCAAACTTGTGCGACTTGTTTTTATCTAAGAGGAGCAAATGTCTATTACCTTGCAGGTTATTTTATCCGACATAAATGCTTATGAGGTAAGTCGTTTGGTTTGGTGGAGTTATCATATTTGCTTTAATAAGTATTGGTTACCATAATTGTGTTCCAATATAATATAAAAACGCATGTTAAGGAATCATCCCTTTCCAAAGTACTGGAATTGAAGAAACTCGACCTTAGAGATAAGAAAACTTTAGCCTTTTAGCCATATCTTTGATGGTTAAGGGTGTAAAAAAAAAATTTAGTGGGTTGCTTTAGATTTTAAGTTTGTTTATATTGGGTAAGTCTATACATGAGTTCTCTTAGAGATAAGCTACACGTACATATATTATCTTACTAGTAGTTCTCTTTAGATCATTCGCTTAACAATTTATGTTGGCTAAATTATAATTCTTTTAATTTTGGAATATTGATGCGTTATTAGAAAATTGGTATTAAAATCCTTTAGAATGTCATATAGAAAATTGATGTGACGGTGACGTAGAACGCATGACTAGGACACTTGTTTGGAATAGATTTAGTCCAAGAGTACAACATTCGAATACGTTGATTTTTTCGTACAATGTTGTAACTTTTCTTTTACTCGAAGAGTAATTTTGAAATGTTCGTGATAGGTTAGGGGTAATTTTACAGCTTTAAAATGAACTTCTGAACTTTTTAATAATTTGGCTTCACATTTTACCGATTTTGAAAATCCTAAAATTATGGTCTACCATTTTTGGTCGAGGATATATGGACCGACTAATTGAGCTATGTTTGAATGGATTTACGACGGATTTATGGTGAATGTTGGTGGTGGTGGGTTGTCAGGTGGATTTAGGCACAGATGCTAAGCACTGCTTCTGCAAAGCTAGTGATTTATTAGCTGTGGTTGAGTAGAGAAGCTTCACAAACCCAACCTTCTCCAACCCTACAACGCAGATGGATGAACATCATCGATTATCCACTCAGATCAGTTCTCTTTCCTCGTTAATTTGTCTTATTTCTGCAATATATATATATATATATATATATATATGATTTTCATTTTCATTTTCATTTTCATTTTGATTGATCTTGTGACCCTAAACATGATATATATAGTTAAAATTATTATCAGGAAAATCAAACCCTAAAAGCATTCCGAAGAAAAACAAAAACTAAATAGGTTCGTTTAGGTTTGGATTATGAATTTATGTCATTTCGTAGCTATATAAGTTTATTTTTGCTAATCTCATAGCTATATAATTTGGG

mRNA sequence

TTTTCCTTGGAATTATTAAGAACGCTCTAGAATTTCTCTTCCCTCGCTAAAACGTTTCTCCCGCTCACCCTCATTCGCCTCCACAGAACTTTGCTTCTTCGACTCACTATCCATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAAGCCCTTTAACGACTGGGCTAATTCATCTTCTGTATCTTCCCGGCAACAAATCACTGGTGGATTCCGAAGAAGTTCGTTGAAAGTCAGCGCGGTTTCTAAAAAATGGGAGCCTACGAAGGTTGTTCCTCAAGCTGATAGAGTTCTCCTCCGTCTTGAGGAGCTTCCCGAGAAATCAGCTGGTGGAGTTTTGCTTCCCAAATCAGCCGTCAAATTTGAGCGACACCTTGTAGGAGAGATTCTATCCATTGGATCAGAAGTTGGAGGAAGTGATCTTGCACCTGGAAAGAAGGTTATTTTATCCGACATAAATGCTTATGAGGTGGATTTAGGCACAGATGCTAAGCACTGCTTCTGCAAAGCTAGTGATTTATTAGCTGTGGTTGAGTAGAGAAGCTTCACAAACCCAACCTTCTCCAACCCTACAACGCAGATGGATGAACATCATCGATTATCCACTCAGATCAGTTCTCTTTCCTCGTTAATTTGTCTTATTTCTGCAATATATATATATATATATATATATATATGATTTTCATTTTCATTTTCATTTTCATTTTGATTGATCTTGTGACCCTAAACATGATATATATAGTTAAAATTATTATCAGGAAAATCAAACCCTAAAAGCATTCCGAAGAAAAACAAAAACTAAATAGGTTCGTTTAGGTTTGGATTATGAATTTATGTCATTTCGTAGCTATATAAGTTTATTTTTGCTAATCTCATAGCTATATAATTTGGG

Coding sequence (CDS)

ATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAAGCCCTTTAACGACTGGGCTAATTCATCTTCTGTATCTTCCCGGCAACAAATCACTGGTGGATTCCGAAGAAGTTCGTTGAAAGTCAGCGCGGTTTCTAAAAAATGGGAGCCTACGAAGGTTGTTCCTCAAGCTGATAGAGTTCTCCTCCGTCTTGAGGAGCTTCCCGAGAAATCAGCTGGTGGAGTTTTGCTTCCCAAATCAGCCGTCAAATTTGAGCGACACCTTGTAGGAGAGATTCTATCCATTGGATCAGAAGTTGGAGGAAGTGATCTTGCACCTGGAAAGAAGGTTATTTTATCCGACATAAATGCTTATGAGGTGGATTTAGGCACAGATGCTAAGCACTGCTTCTGCAAAGCTAGTGATTTATTAGCTGTGGTTGAGTAG

Protein sequence

MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE

Homology

[Close]

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.7e-44
Identity = 92/140 (65.71%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 3   MASTFVTVPKPFNDW-ANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVLL 62
           MAS+F+TVPKPF  +   +++ +  QQ   G RR+S +++AVS KWEP KVVPQADRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 63  RLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVDL 122
           RLE LPEKS+GGVLLPKSAVKFER+L GE++S+GSEVG  ++ PGKKV+ SD++AYEVD 
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVG--EVEPGKKVLFSDMSAYEVDF 120

Query: 123 GT-DAKHCFCKASDLLAVVE 141
           GT DAKHCFCK SDLLA+V+
Sbjct: 121 GTEDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot
Match: O80504 (10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-42
Identity = 89/140 (63.57%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 3   MASTFV-TVPKPFNDW-ANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 62
           MASTFV ++P PF  +   +++ S+      G RR  L++ A+S KWEPTKVVPQADRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 63  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 122
           +RLE+LP KS+GGVLLPK+AVKFER+L GEI+S+GSEV G  + PGK+V+ SD++AYEVD
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEV-GQQVGPGKRVLFSDVSAYEVD 120

Query: 123 LGTDAKHCFCKASDLLAVVE 141
           LGTDA+HCFCK SDLLA+VE
Sbjct: 121 LGTDARHCFCKESDLLALVE 139

[Close]

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot
Match: Q0I7U2 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 52  VVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIG---SEVGGSDLAP--- 111
           V P  DRV +++ E  EK+AGG+LLP +A   E+  VGE++ +G   S   GS  AP   
Sbjct: 11  VKPLGDRVFVKISESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKSNDDGSRQAPEVG 70

Query: 112 -GKKVILSDINAYEVDLGTDAKHCFCKASDLLAVV 140
            G KV+ S     ++ LG+D ++      D+LAVV
Sbjct: 71  IGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot
Match: A5GNB0 (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 52  VVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIG---SEVGGSDLAP--- 111
           V P  DRV +++ E  EK+AGG+LLP +A   E+  VGE++ +G   +   GS  AP   
Sbjct: 11  VKPLGDRVFVKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKANEDGSRQAPEVG 70

Query: 112 -GKKVILSDINAYEVDLGTDAKHCFCKASDLLAVV 140
            G KV+ S     ++ LG+D ++      D+LAVV
Sbjct: 71  VGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot
Match: O65282 (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 33  FRRSSLK-VSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVK----FERHL 92
           FRR  +K  S V+ K+  T + P  DRVL++++E  EK+ GG+LLP +A       E   
Sbjct: 44  FRRLVVKAASVVAPKY--TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVA 103

Query: 93  VGEILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 141
           VGE  +IG       +  G ++I S     EV+   D KH   K  D++ ++E
Sbjct: 104 VGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

[Close]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL
Match: A0A6J1FCS3 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442821 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.2e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60
           MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120
           LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKASDLLAVVE 141
           LGTDAKHCFCKASDLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL
Match: A0A6J1ICA1 (10 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473490 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.2e-69
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60
           MAMASTFVTVPKPFNDWANSSSVSSR+ ITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRRLITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120
           LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKASDLLAVVE 141
           LGTDAKHCFCKASDLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL
Match: A0A5D3CZW2 (10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003170 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 116/141 (82.27%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MAMASTFVTVPKPFNDWANSS-SVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRV 60
           MAMASTF+TVPKPF +  N+S SVS+R+ I GG R S+LKVSA+S+KWEP KVVPQADRV
Sbjct: 1   MAMASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

Query: 61  LLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEV 120
           L+RLEELPEKSAGGVLLPKSAVKFER+LVGEILS+G+EVGG+D+APGKKV+LSDINAYEV
Sbjct: 61  LVRLEELPEKSAGGVLLPKSAVKFERYLVGEILSVGAEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKASDLLAVVE 141
           DLGTDAKHCFCKA DLLAVVE
Sbjct: 121 DLGTDAKHCFCKAGDLLAVVE 141

[Close]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL
Match: A0A1S3AWL8 (10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 116/141 (82.27%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MAMASTFVTVPKPFNDWANSS-SVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRV 60
           MAMASTF+TVPKPF +  N+S SVS+R+ I GG R S+LKVSA+S+KWEP KVVPQADRV
Sbjct: 1   MAMASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

Query: 61  LLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEV 120
           L+RLEELPEKSAGGVLLPKSAVKFER+LVGEILS+G+EVGG+D+APGKKV+LSDINAYEV
Sbjct: 61  LVRLEELPEKSAGGVLLPKSAVKFERYLVGEILSVGAEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKASDLLAVVE 141
           DLGTDAKHCFCKA DLLAVVE
Sbjct: 121 DLGTDAKHCFCKAGDLLAVVE 141

[Close]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL
Match: A0A0A0L6L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.1e-56
Identity = 115/141 (81.56%), Postives = 129/141 (91.49%), Query Frame = 0


Query: 1   MAMASTFVTVPKPFNDWANSS-SVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRV 60
           MAMASTF TVPKPF +  N+S SVS+R+ ITGG R S+LKVSA+SKKWEP KVVPQADRV
Sbjct: 1   MAMASTFFTVPKPFINTPNTSPSVSTRRLITGGLRSSNLKVSAISKKWEPAKVVPQADRV 60

Query: 61  LLRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEV 120
           L+RLEELPEKS GGVLLPKSAVKFER+LVG ILS+G+EVGG+D+APGKKV+LSDINAYEV
Sbjct: 61  LVRLEELPEKSVGGVLLPKSAVKFERYLVGVILSVGTEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKASDLLAVVE 141
           DLGTDAKHCFCKA DLLA+VE
Sbjct: 121 DLGTDAKHCFCKAGDLLAIVE 141

[Close]

BLAST of CmoCh06G012150 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-45
Identity = 92/140 (65.71%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 3   MASTFVTVPKPFNDW-ANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVLL 62
           MAS+F+TVPKPF  +   +++ +  QQ   G RR+S +++AVS KWEP KVVPQADRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 63  RLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVDL 122
           RLE LPEKS+GGVLLPKSAVKFER+L GE++S+GSEVG  ++ PGKKV+ SD++AYEVD 
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVG--EVEPGKKVLFSDMSAYEVDF 120

Query: 123 GT-DAKHCFCKASDLLAVVE 141
           GT DAKHCFCK SDLLA+V+
Sbjct: 121 GTEDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of CmoCh06G012150 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-43
Identity = 89/140 (63.57%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 3   MASTFV-TVPKPFNDW-ANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 62
           MASTFV ++P PF  +   +++ S+      G RR  L++ A+S KWEPTKVVPQADRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 63  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 122
           +RLE+LP KS+GGVLLPK+AVKFER+L GEI+S+GSEV G  + PGK+V+ SD++AYEVD
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEV-GQQVGPGKRVLFSDVSAYEVD 120

Query: 123 LGTDAKHCFCKASDLLAVVE 141
           LGTDA+HCFCK SDLLA+VE
Sbjct: 121 LGTDARHCFCKESDLLALVE 139

[Close]

BLAST of CmoCh06G012150 vs. TAIR 10
Match: AT5G20720.1 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 33  FRRSSLK-VSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVK----FERHL 92
           FRR  +K  S V+ K+  T + P  DRVL++++E  EK+ GG+LLP +A       E   
Sbjct: 44  FRRLVVKAASVVAPKY--TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVA 103

Query: 93  VGEILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 141
           VGE  +IG       +  G ++I S     EV+   D KH   K  D++ ++E
Sbjct: 104 VGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

[Close]

BLAST of CmoCh06G012150 vs. TAIR 10
Match: AT5G20720.2 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 33  FRRSSLK-VSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVK----FERHL 92
           FRR  +K  S V+ K+  T + P  DRVL++++E  EK+ GG+LLP +A       E   
Sbjct: 44  FRRLVVKAASVVAPKY--TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVA 103

Query: 93  VGEILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 141
           VGE  +IG       +  G ++I S     EV+   D KH   K  D++ ++E
Sbjct: 104 VGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

[Close]

BLAST of CmoCh06G012150 vs. TAIR 10
Match: AT5G20720.3 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 33  FRRSSLK-VSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVK----FERHL 92
           FRR  +K  S V+ K+  T + P  DRVL++++E  EK+ GG+LLP +A       E   
Sbjct: 44  FRRLVVKAASVVAPKY--TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVA 103

Query: 93  VGEILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 141
           VGE  +IG       +  G ++I S     EV+   D KH   K  D++ ++E
Sbjct: 104 VGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVKHLILKEDDIVGILE 153

The following BLAST results are available for this feature:

BLAST of CmoCh06G012150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1C2	2.7e-44	65.71	10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE...	[more]
O80504	1.5e-42	63.57	10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE...	[more]
Q0I7U2	7.5e-07	38.95	10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=...	[more]
A5GNB0	1.7e-06	37.89	10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=...	[more]
O65282	1.7e-06	34.51	20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 S...	[more]

BLAST of CmoCh06G012150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCS3	2.2e-70	100.00	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1ICA1	4.2e-69	98.57	10 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3CZW2	1.4e-56	82.27	10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AWL8	1.4e-56	82.27	10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1	[more]
A0A0A0L6L9	4.1e-56	81.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1	[more]

BLAST of CmoCh06G012150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60210.1	1.9e-45	65.71	GroES-like family protein	[more]
AT2G44650.1	1.0e-43	63.57	chloroplast chaperonin 10	[more]
AT5G20720.1	1.2e-07	34.51	chaperonin 20	[more]
AT5G20720.2	1.2e-07	34.51	chaperonin 20	[more]
AT5G20720.3	1.2e-07	34.51	chaperonin 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 51..139 e-value: 2.9E-10 score: 50.1
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 51..139 e-value: 2.3E-14 score: 53.2
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 17..139
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 51..139 e-value: 2.84672E-17 score: 69.8435
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 47..140 e-value: 3.7E-13 score: 51.3
None	No IPR available	PANTHER	PTHR10772:SF13	10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED	coord: 17..139
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 51..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G012150.1	CmoCh06G012150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding