CmoCh06G011790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G011790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWIB domain-containing protein
Location	Cmo_Chr06: 9008800 .. 9011799 (+)
RNA-Seq Expression	CmoCh06G011790
Synteny	CmoCh06G011790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTGTTTATGTCATCTGAAAGAAATGATAATCGAGCACGATATCGTCTTCGGTTACACTACGATTGTCATTGTTAGATGAACAAACTCTCGACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCACATTGTTTTTGTTTGGGCTTCCGTAAATACCTCTTTTATTTCCTCTTTTTATGTATGGTTTGATTTGAACAAAATCTCTGTAGAAATTGATCAATTTGATTTTGTCTAATATCTTGCTGCCAGTGGAACTAAAGAATCGGCGAGTTTCTCTTAAACCTCCGCCGGGAATCGACTGCAACATCCAAGCAAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCATCGGCTGCCGTTCCCGCCGCCATCAAATCGAAGGAGAAGGCTCCTCCGAGCTCCGATGACGTTGTTTCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGTAACGACTCGATCGACGGGGATTCTCAAGGTCGTCGAGGTTTCTCCAGCGTTGAGCAACTTCTTAGGTGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCAACAACCTTCAGGTTTCTACCTTCCTTCCACTGCTATCTATGTATTTGATTGCGTACGATACCATTGTAGTTTCTAGGGAAATGAGTTGTTATCTGCGATTTTTGCTTAATGGCTTGATCGGCCCATTGATTTAGCGTGAATATGAAGAGAAATTTCATCTTCAAGTGAACAAACTAGTTCCCCGACCCTCCAATTTTCCTTTCCTTACACTGCAAATAAATTTGGATGTTCGTAGCAATTTCTTAGTAATGGCATCTCTCAAGTCTTAATTGATGTTCTTACCTCGAAAAATAGATGAAAAGTTCATGGGGAAGTACTTCATTACAATGTTGGAGCTTATCAAAATATTCTAAAGGCCAATTGTTCTTGCATTTACACTGGTAAATTCCCTATGAAGCTGTTTTGAATGAAATCTTCCGTTATTCTTTCTTTTCTTATAGCGATAATGATCAAAATCCATGAGTTATCTTGAAACATTGGAATTGAAAATCTTTCAGTGTCCATTGATGGACTTTTGCCTGCATTACACAAAGCTTTTATACATCTAGGTCTACCCACTCTCTCTTTCAATGAGAATAATTAAGATTGAAACGTTTGATTAAAGGATTGTATAGCATAAACACTTAGATGTGAATCCCTGCTGTTTTTTGTTCCATTTCTTGCGTCTATGAGAAACGATGTGGCATTAAAATAATAGTAGGGTAGATACTGTTAGAAACCACGACCCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGGTTTCCCGAAAAGGCCTCATACCATTTTTGATGTATTAACCGAAAAGGCCTCATACCATTTTTGATGTATGCCTTACTTATAAACCCATGATCATCCCCTTAATTAGCCAACGTGGGACTCCTCCCAACAATCCTCCGCTCAAACAAAGTACACCATAGAGCCTCCCTTTGGTCTATGGAGCCCTCGAACAACCTCACCTTAGTCGAGGCTCGACTCCTTCTCTGGTTTCGCCAAAAAGGCTTCATACCGTCTTAGGAACCACGACCCTCCAAAATAGTATGATACTGTCCACTTTGAGCATAAGATCTCATGGCTTTTCTTTTGGTTTCCCCAAAAGGTTACTTATAAACTCATGATCATCCTTTTAATTAGCCAACGTAGGACTCCTCCCAACAATTCTCAATAGACACTACAACCTAAGGGCATGGAAAGCTGAAAGAAAGCTTTCGATTTGTTAACGATTGTAGAAAAGGTTCCACCTACCTTAGAATTTAATACCCTACGAATTTCATTGGCAACCAAATGTAATAGGGTCAAGTGGTTATCTCATGAGATTAGTCATGGCGTGTGCAAGCTTACTCAGCTATTCATGGATATCTAAAAAAAAGAACGGTAGAAAGGTTGTAATTATACAAGAATGTCAACTAAAACTCCACCAATAGTAAGCTGTACTTTTCTCCAAAGACTCTAAAAAGAGGAGGACTTCTCTTCGAAGGTCCTGATCTGATTCCTTCCCAACCAAAATGTTCCATAACAATGTCGGAGCTGCACAACTCCGCTAAAGTTTCCTTAATGGACACCTTCCATGCTGAAAAAACACGACTCTCGTCTTTTGTAACGACAGTTAAGCCAGGGTTAACATAAGCTTGAAGATATCAAATACCATATAAGTTTTTTCCATATGACATATTGTAGGTTAGGGTCGTCTGGTTGAAGGTTTTGTTCAGCTACACGCAAGTACCCATAGTTTTAAAAGAAAAAACAAACGGGCTAGGCCTCAAAGAGCTCTTTCTTGCATGTTTAGTTGCTAATCAGGGAGTTTCTGTTCTCCAAGCTATGGAATGATGAGAATTTCATTGTCTTCCCCTGCAGAATCCTGCTAACAAAAGGGAGATCTTCTGTGACGATAAGCTTAAAGCCATATTCGAAGGAAGGGAAAAGGTCGGTTTCCTCGAGATCGCGAAATTGCTCACTCACCATTTTGTGAAGGACTGATCAGTACAGAAGATGAGAGATCAACTTCCAGACCATTTTGTGGCTCTTTATCTTGCAGCCTCAACTCTTATAGTTTTGTTTGGCTCATGTTTGTTTAGGCATTTTGTAAAAAAGAAAGCACCAAATTAGACGCCTTCCATTTTCTTCACAAGCCTAAGCTTCTTTGTGCTTGCTCAACAATACTTCTTTTGGTTCATGGAAGTAGGTTGTTCGTATGGTACCTCGTTCTAATCGTACGGATCTTTAAGTTTTCAATTTACTTGGAATCTCAAATGTTTTATTATGATTTTTCGTCGATGTGCTAGAATCGACTCATGTCAACATTTTCGTGAATACCCTTATTTCATTCAATTATAGTATGTAGTCAAGTTCATTCC

mRNA sequence

ACGTGTTTATGTCATCTGAAAGAAATGATAATCGAGCACGATATCGTCTTCGGTTACACTACGATTGTCATTGTTAGATGAACAAACTCTCGACAATGTGGAACTAAAGAATCGGCGAGTTTCTCTTAAACCTCCGCCGGGAATCGACTGCAACATCCAAGCAAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCATCGGCTGCCGTTCCCGCCGCCATCAAATCGAAGGAGAAGGCTCCTCCGAGCTCCGATGACGTTGTTTCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGTAACGACTCGATCGACGGGGATTCTCAAGGTCGTCGAGGTTTCTCCAGCGTTGAGCAACTTCTTAGGTGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCAACAACCTTCAGAATCCTGCTAACAAAAGGGAGATCTTCTGTGACGATAAGCTTAAAGCCATATTCGAAGGAAGGGAAAAGGTCGGTTTCCTCGAGATCGCGAAATTGCTCACTCACCATTTTGTGAAGGACTGATCAGTACAGAAGATGAGAGATCAACTTCCAGACCATTTTGTGGCTCTTTATCTTGCAGCCTCAACTCTTATAGTTTTGTTTGGCTCATGTTTGTTTAGGCATTTTGTAAAAAAGAAAGCACCAAATTAGACGCCTTCCATTTTCTTCACAAGCCTAAGCTTCTTTGTGCTTGCTCAACAATACTTCTTTTGGTTCATGGAAGTAGGTTGTTCGTATGGTACCTCGTTCTAATCGTACGGATCTTTAAGTTTTCAATTTACTTGGAATCTCAAATGTTTTATTATGATTTTTCGTCGATGTGCTAGAATCGACTCATGTCAACATTTTCGTGAATACCCTTATTTCATTCAATTATAGTATGTAGTCAAGTTCATTCC

Coding sequence (CDS)

ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCATCGGCTGCCGTTCCCGCCGCCATCAAATCGAAGGAGAAGGCTCCTCCGAGCTCCGATGACGTTGTTTCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGTAACGACTCGATCGACGGGGATTCTCAAGGTCGTCGAGGTTTCTCCAGCGTTGAGCAACTTCTTAGGTGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCAACAACCTTCAGAATCCTGCTAACAAAAGGGAGATCTTCTGTGACGATAAGCTTAAAGCCATATTCGAAGGAAGGGAAAAGGTCGGTTTCCTCGAGATCGCGAAATTGCTCACTCACCATTTTGTGAAGGACTGA

Protein sequence

MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

Homology

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BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 67  KVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFE 123
           K +++SP L+ FLG+ ++SR   VK++W YIK ++LQ+P +KR I CDDKLK++FE
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

[Close]

BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 52  KPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREI 111
           K K     + S  + KV+ +S  L  FLG  E+ RT  VK IW YIK ++LQNP ++REI
Sbjct: 108 KKKNDSPDSNSISVRKVL-LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREI 167

Query: 112 FCDDKLKAIFEGREKVGFLEIAKLLTHH 140
            CD+K++ IF   +K+    + KLLT H
Sbjct: 168 LCDEKMEPIF--GKKMTMFSMNKLLTKH 192

[Close]

BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-10
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 34  SKEKAPPSSDDVVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQI 93
           SK  +    +D  +      K K   ++S    + V +S +L++ LG  E++RT  V+++
Sbjct: 89  SKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRL 148

Query: 94  WSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK 143
           W+YIK +NLQNP NK+EI CD+KL+ I    +     E+ K+L  H  +
Sbjct: 149 WAYIKAHNLQNPNNKKEILCDEKLELIL--GKSTNMFEMHKILASHMTE 195

[Close]

BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-06
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 70  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGF 129
           ++S AL + LG+   +R   +  IW Y+K   LQNP +     CD  L+ +F G EK+ F
Sbjct: 320 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKF 379

Query: 130 LEIAKLLTHH 140
             +++ ++HH
Sbjct: 380 TMVSQKISHH 388

[Close]

BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.2e-05
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 70  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGF 129
           ++S A +N LG+ E +R + V  +W YIK + LQ+   KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 130 LEIAKLL 137
             I +L+
Sbjct: 267 PRIPELM 272

[Close]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL
Match: A0A6J1GFF6 (upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=LOC111453685 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTT 60
           MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTT
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTT 60

Query: 61  RSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAI 120
           RSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAI
Sbjct: 61  RSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAI 120

Query: 121 FEGREKVGFLEIAKLLTHHFVKD 144
           FEGREKVGFLEIAKLLTHHFVKD
Sbjct: 121 FEGREKVGFLEIAKLLTHHFVKD 143

[Close]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL
Match: A0A6J1IKQ4 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111474920 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.2e-64
Identity = 136/149 (91.28%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAI------KSKEKAPPSSDDVVSAAAPKPK 60
           MSSGFSNGIRVFRGC ALLAPSKSSAAVPA+I      KSKEKAPPSSDDVVSAAAPKP 
Sbjct: 1   MSSGFSNGIRVFRGCTALLAPSKSSAAVPASIKSKATSKSKEKAPPSSDDVVSAAAPKPT 60

Query: 61  IKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCD 120
           IKR TTR TGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCD
Sbjct: 61  IKRATTRLTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCD 120

Query: 121 DKLKAIFEGREKVGFLEIAKLLTHHFVKD 144
           DKLKAIFEGREKVGFLEIAK L+HHFVKD
Sbjct: 121 DKLKAIFEGREKVGFLEIAKFLSHHFVKD 149

[Close]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDVVSAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSA V PAA+KS          KEK PP S DV +AA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRS-DVAAAA 60

Query: 61  APKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120
           APKPK+KR  TRSTG LKV++VSPAL NFLGVSE SRT+AVKQIWSYIKL+NLQNPANKR
Sbjct: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 144
           EI+CDDKLKAIFEGREKVGFLEI KLLT HFVK+
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 117/155 (75.48%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAVPAAI------------KSKEKAPPSSDDVVSA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VPAA             +SKEK  PSS D  +A
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSS-DTAAA 60

Query: 61  AAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANK 120
           AAPKPKIKR  TR  GILKV +VSPAL NFLGV E SRT+AVKQIWSYIKL+NLQNPANK
Sbjct: 61  AAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 144
           REI+CDDKLKAIFEGREKVGFLEI KLL  HFVK+
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

[Close]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 115/154 (74.68%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDVVSAA 60
           MSSGFSNGIRVFRGC +LLAP KSSA V P A+KS          KEK PP S DV +AA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRS-DVAAAA 60

Query: 61  APKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR 120
           APKPK +R  TR TG+LKV +VSPAL NFLGVSE SRT+AVKQIWSYIKL+NLQNP+NKR
Sbjct: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120

Query: 121 EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD 144
           EI+CDDKLKAIFEGREKVGFLEI KLLT HFVK+
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of CmoCh06G011790 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-32
Identity = 79/139 (56.83%), Postives = 97/139 (69.78%), Query Frame = 0


Query: 11  VFRGCRALLAPSK--SSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIK-----RVTTRST 70
           VFRG R+LLAP+   +S+ V A    K  A P      + A PKPK K     + T RST
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPK-----AKAKPKPKAKSDSPAKKTPRST 67

Query: 71  GILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEG 130
           GI KV  VSP L+ FLG  E SRT+A+K IW+YIK ++LQNPA+KREIFCD+ LK IFEG
Sbjct: 68  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 127

Query: 131 REKVGFLEIAKLLTHHFVK 143
           ++KVGFLEI+KLL+ HFVK
Sbjct: 128 KDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of CmoCh06G011790 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 66/133 (49.62%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 10  RVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTTRSTGILKVV 69
           RVF  CR L+A + SS                               +   + TGILKVV
Sbjct: 3   RVFGACRVLMAKAASSTGA----------------------------KTGRQGTGILKVV 62

Query: 70  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGF 129
            VS  L+NF+G +EVSRT AVK+IW YIKLNNLQNP NKREI CD++LK IF G++ VGF
Sbjct: 63  PVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGF 107

Query: 130 LEIAKLLTHHFVK 143
           LEI+KLL+ HF K
Sbjct: 123 LEISKLLSQHFPK 107

[Close]

BLAST of CmoCh06G011790 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-22
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 20  APSKSSAAVPAAIKSKEKAPPSSDDV-----VSAAAPKPKIKRVTTRSTGILKVVEVSPA 79
           AP +SS   P++++     P +   V      +AA+  P     T    GI+K   VS A
Sbjct: 18  APLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQA 77

Query: 80  LSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAK 139
           + + +GV E+ RT A+K+IW+YIK ++LQ+P NKR+I CD+KLK IFEG+E+VGFLEIAK
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 140 LLTHHFV 142
           L+  HF+
Sbjct: 138 LIGPHFL 144

[Close]

BLAST of CmoCh06G011790 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 58  VTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKL 117
           V     GI K   VS  L++F G  E++R +A+K++W Y+KL+NLQNPANK+EI CDDKL
Sbjct: 26  VAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKL 85

Query: 118 KAIFEGREKVGFLEIAKLLTHHFVK 143
           K IF+G++KVG  EI KLL+ HF K
Sbjct: 86  KTIFDGKDKVGITEIMKLLSPHFPK 110

[Close]

BLAST of CmoCh06G011790 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-20
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 26  AAVPAAIKSKEKAPPSSDDVVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVS 85
           A+ PAA     +A  S+ +     A   ++ R      GI+K   VSP + + + + E++
Sbjct: 32  ASHPAAKLRLVRAVTSATESSEPTATNKRVPR------GIMKPRPVSPEMQDIVELPEIA 91

Query: 86  RTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFV 142
           RT A+K+IW+YIK ++LQ+P NKREI CD+KLK IFEGR++VGFLEIAKL+  HF+
Sbjct: 92  RTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

The following BLAST results are available for this feature:

BLAST of CmoCh06G011790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	4.0e-11	51.79	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	2.0e-10	43.18	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	4.4e-10	33.94	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9FMT4	8.5e-06	34.29	SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]
Q9P7S3	3.2e-05	37.31	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of CmoCh06G011790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFF6	6.7e-70	100.00	upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IKQ4	4.2e-64	91.28	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111474920 PE=4 SV=1	[more]
A0A6J1IWB1	1.8e-54	79.22	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1D0R8	1.8e-51	75.48	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1EDA2	1.5e-50	74.68	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CmoCh06G011790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.4e-32	56.83	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.4e-27	49.62	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	8.7e-22	44.88	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.1e-21	55.29	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	4.8e-20	45.69	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 65..143 e-value: 6.1E-31 score: 118.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 69..140 e-value: 2.1E-30 score: 104.4
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 64..142 score: 22.732538
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 59..143 e-value: 4.5E-28 score: 99.1
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 61..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..50
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..142
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..142
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 69..140 e-value: 1.94449E-35 score: 115.333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G011790.1	CmoCh06G011790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus