CmoCh06G011190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G011190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LIM domain-containing protein PLIM2b-like
Location	Cmo_Chr06: 8616327 .. 8619355 (+)
RNA-Seq Expression	CmoCh06G011190
Synteny	CmoCh06G011190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCCACCGCCCTCCAATTTCCTTTGAAATCGTCAACCGATCCGCTCTTCTTTCATTCTATGTCAAGAAATTCTGTCCGGAATTGGAGCTGATCCAACCAATGAATCACAAATCTCTCCCGCATTTGGATTCACACCACCAAATCCGACACTATTTCATGTATAAATTTGGATTTTTACTTCATCAATCACAGACCTCAATCCTCCCCCTCGTATCTGATCTTGTCTGGAAGATCGAGGCTTCGGAGGGCTTGAGGTTTCCATTGCACTACATTTTCTTCGTTTCTGGTGTGTTTTTTCTGTTTTCTTCTTTTCCGGAAGTTCTTCTGTCTCGGATTGAGTCCATCTTGTAAAACACTCATTTCTTCATAAAATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGGTTAGTCTCGGTTTACATTTTCAAATTTCAACATCACCTTCTCGTGTTAGATCGTTCGATAATGGCGGATTTTACCCTAATTGTTTGATTATGATGACAGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCAAACTTCCAATGTAGTATAACCGTTATTTCCCTCTTTTTGTCTGTTCCTTTTTCTTTTCATATGTTCCTGACATTCTCGTTTCATTGTTCAACAGCCAAGTCTGAGAAGAAACCTGAACTGGTATGCTCCCATTGTGTTCTTCTTTCCTTAGATTTAAAAGAAGTGACTGTCATAATCTCACTAACTCGTGGATTAGATACTAGATTGAATGTATGAGAATAAAATGGAACAAAGTTTGATAGTTGCTAGGATCATGCAAGTTTTTGAATCTACATCCAACCGTTATTTGGGTTGTAGTCATCTCGTTTTCAACCATTCTTATTGGCATTCGAAACTTCAAATTCATATCGAATGTTTGTTAGGAGCCAATTTAGATTTTTAAAGTTCTCTAACGATTATTATGAGACTCCTACATTACGATCATGTCATTCAATAGTATTTATGAGAAAGAAACGGTTAATCTCGTTACTATGTGCACTTTTTTCAAATTCATTTCTAGGAGACCACTCATTCAATAATTTTGCCTGGTTTTGAATATGCCATTCCCAATAGGCTTAGCTTGCTCACCTGAAATAGAATGGGCCTAGGCATTCTGGTTTTGTTTCTAATTTTCTAAAGCTAAGTTTTCGGTCAAGAAGTTTGATTGGACGTGCCATTAGAGTTTTCTAACGTTCTATAGTCAACTTAGCTATCACTCAAGCAGCCAAGAGCATGTTTGATTGAAACCAGGGAAAAATTCATCTTGTTACCAAGGGAAAGAGAGTGTCCCTTTTGTGACATTTACCCCGAAAAAAAAAAAGCCTATTCTATTCGAAAGTGTCCCACATCGGTTAATTTAGGGAATGATCATGGGTTTATAATCAAAAAATACACTCTCCATTGGTTTGAGGCCTTTCCCCAAAAGGCCATGAGAGCTTATGCTCATTGTGGAGAGTCGTGTTCGTCTTTTGAAACTTCAGCCCTGTGATTTTCATGCAAATGCTGTAATATTCATGTTATATTACAACTTTCACAATCTTTGACAGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGGTCCGTAGTTCTTCCCCTTTTCTTCTTTACACAACACACATTTTTCTCAAAATTGTGAAAGAAAACTCTGCTGGGCTTAACAGATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGCAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGTAGAGCAGTCTTAAAATGCTTCTTCTGCTCTTCCAGACTTTGAGAATTCATCTCTTATGAAAAAAAAAAAAAAAAAGTTTATTCTTCTGTTTGGAATGAAAACATTTGTTTTTGTTCCCAATTCACATTCATTGGAATGGAAACATTTGTTTTTGTTCTCACATTTATTTCCAATTTATACTATATTCTGCTGCACTTTCAAGTATCACCTAATAAGTTCTAGAAAAACACACCTTATTTTGTTTATGGCATAGAATGATAAGCTCTAGTGGATTTTACGGTACGAGAATTTTTGTTCTATGTTGAAGCTCGGTTCTTATGTTTGTACTCCATCCCCACAGGGGTAGAGAATCCATCGCTATCTTAGCTGTGTGCTAACGGAGGTTTTGGGGAAATTAGAAGGTTGGCTTACTACTTAGATGCTTTCAACAGTTATCCACTTTGCACTTGGCTATCTAGCGTTTACCGTTGGTATGATAATTGGTACACGAGCAATTATCTAGTGTTTACCATTGGTACCATTGGTTTTTAAGGTGAAGATTTGTACTTAGAATTTCTAGCATTATGGCCAATGTTTTTTTTTCACAAGTTGTGCTATCAAGTCAGTTTAATATCTCAGCATATTCCCAAATTCTTTGAACCAAATTTGTCCCAGTAGCACTATTGGATATACACCATTTTGGCTTCATGGGCGATTGTGATTGCAGTCTTCATAAGTCCATATCATATCAAACCATCTTGATGTCAAAATAATATCTATCCGATACAAGTCAATTCGGATCACTCAATCTCTCAATATGCAATTGTTAAACTAAAAAAACCCTAGAAAAACGAGAAGCCGTATGATCTGAAAATCTTATATACAGTTCTCAGGCTACCTTTTAA

mRNA sequence

CTCTCCCACCGCCCTCCAATTTCCTTTGAAATCGTCAACCGATCCGCTCTTCTTTCATTCTATGTCAAGAAATTCTGTCCGGAATTGGAGCTGATCCAACCAATGAATCACAAATCTCTCCCGCATTTGGATTCACACCACCAAATCCGACACTATTTCATGTATAAATTTGGATTTTTACTTCATCAATCACAGACCTCAATCCTCCCCCTCGTATCTGATCTTGTCTGGAAGATCGAGGCTTCGGAGGGCTTGAGGTTTCCATTGCACTACATTTTCTTCGTTTCTGGTGTGTTTTTTCTGTTTTCTTCTTTTCCGGAAGTTCTTCTGTCTCGGATTGAGTCCATCTTGTAAAACACTCATTTCTTCATAAAATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCAAACTTCCAATCCAAGTCTGAGAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGGTCCGTAGTTCTTCCCCTTTTCTTCTTTACACAACACACATTTTTCTCAAAATTATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGCAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGCTACCTTTTAA

Coding sequence (CDS)

ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCAAACTTCCAATCCAAGTCTGAGAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGGTCCGTAGTTCTTCCCCTTTTCTTCTTTACACAACACACATTTTTCTCAAAATTATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGCAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGCTACCTTTTAA

Protein sequence

MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPHFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAATF

Homology

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BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.3e-77
Identity = 132/195 (67.69%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKC  C+KTVYVVD+LS+EG PYHK+CFRC+HCKGTL M+++S MDGVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSS 120
           HF+QLFKESGNF+ NFQ    +KPELTRT SK+S++FCGTQD+CAAC K VYPLEK    
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK---- 120

Query: 121 SPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMV 180
                         I +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM 
Sbjct: 121 --------------IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 177

Query: 181 KGNYTHVLQAAANKK 195
           KGNY HVLQAA +++
Sbjct: 181 KGNYAHVLQAANHRR 177

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BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.9e-71
Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 0


Query: 2   AFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPH 61
           AFTGT DKCKAC+KTVYV+DL++LEG PYHK+CFRCSHC GTL + ++S MDGVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FDQLFKESGNFA-NFQS--KSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRS 121
           F+QLFKESGNF+ NFQ+  K+EK  + T+  ++LS+ F GTQD+CAAC K VYPLEK   
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEK--- 122

Query: 122 SSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFM 181
                          +++EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+
Sbjct: 123 ---------------MTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFL 182

Query: 182 VKGNYTHVLQAAANKKATMTPAERAE-KDGKPQPDSED 216
            KGNY HVLQAAAN + +    ++ E K+ +  P  E+
Sbjct: 183 EKGNYNHVLQAAANHRRSTAEEDKTEPKEDEANPTEEE 202

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BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-70
Identity = 133/218 (61.01%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKCKAC+KTVYV+DLL+LEGN YHK+CFRC+HCKGTL ++++S MDGVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKP--ELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVR 120
           HF+QLFKESGN++ NFQ+   +KP   LTRT SKLS+ F GTQD+CA C K VYPLEKV 
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKV- 120

Query: 121 SSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLF 180
                            ++EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF
Sbjct: 121 -----------------TMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLF 180

Query: 181 MVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSED 216
           + KG+Y HV QAAAN +       R+   G   P S+D
Sbjct: 181 LEKGSYNHVHQAAANHR-------RSASSGGASPPSDD 193

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BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-62
Identity = 110/202 (54.46%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KC+AC KTVY V+LLS +G  YHK CF+CSHCK  L ++++S M+GV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKESGNFA-NFQSKS-----EKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLE 120
           HF+QLFKESG+F+ NFQS +     +  PEL RT S+L+ MF GTQD+CA C+K VYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFA 180
           KV                  ++E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFA
Sbjct: 121 KV------------------TVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFA 180

Query: 181 QLFMVKGNYTHVLQAAANKKAT 197
           QLF  KG+Y H++++A+ K+AT
Sbjct: 181 QLFKEKGSYNHLIKSASIKRAT 184

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BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-61
Identity = 112/200 (56.00%), Postives = 149/200 (74.50%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KCKAC KTVY V+LLS +G  YHK+CF+C+HCK  L ++S+S M+GVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKESGNF-ANFQS--KSEKK--PELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK 120
           HF+QLFKESG+F  NFQS  KS  K  PELTRT S+++  F GTQ++CA CSK VYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQ 180
           V                  ++E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQ
Sbjct: 121 V------------------TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQ 180

Query: 181 LFMVKGNYTHVLQAAANKKA 196
           LF  KG+Y H++++A+ K++
Sbjct: 181 LFKEKGSYNHLIKSASIKRS 182

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BLAST of CmoCh06G011190 vs. ExPASy TrEMBL
Match: A0A6J1FVW8 (LIM domain-containing protein PLIM2b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447345 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 199/217 (91.71%), Postives = 199/217 (91.71%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSSS 120
           HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK     
Sbjct: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK----- 120

Query: 121 PFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK 180
                        ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK
Sbjct: 121 -------------ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK 180

Query: 181 GNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA 218
           GNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA
Sbjct: 181 GNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA 199

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BLAST of CmoCh06G011190 vs. ExPASy TrEMBL
Match: A0A6J1ICJ4 (LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111474367 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 197/217 (90.78%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSSS 120
           HFDQLFKESGNFANFQSKS+KKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK     
Sbjct: 61  HFDQLFKESGNFANFQSKSDKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK----- 120

Query: 121 PFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK 180
                        ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK
Sbjct: 121 -------------ISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVK 180

Query: 181 GNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA 218
           GNYTHVLQAAANKKATMTPAE AEKDGKPQPDSEDGA
Sbjct: 181 GNYTHVLQAAANKKATMTPAEHAEKDGKPQPDSEDGA 199

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BLAST of CmoCh06G011190 vs. ExPASy TrEMBL
Match: A0A6J1FNB1 (LIM domain-containing protein PLIM2b-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447345 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 198/245 (80.82%), Postives = 199/245 (81.22%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP
Sbjct: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60

Query: 61  HFDQLFKESGNFANFQ----------------------------SKSEKKPELTRTNSKL 120
           HFDQLFKESGNFANFQ                            +KSEKKPELTRTNSKL
Sbjct: 61  HFDQLFKESGNFANFQCSITVISLFLSVPFSFHMFLTFSFHCSTAKSEKKPELTRTNSKL 120

Query: 121 SAMFCGTQDRCAACSKVVYPLEKVRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGG 180
           SAMFCGTQDRCAACSKVVYPLEK                  ISLEGECYHKNCFRCAHGG
Sbjct: 121 SAMFCGTQDRCAACSKVVYPLEK------------------ISLEGECYHKNCFRCAHGG 180

Query: 181 CNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPD 218
           CNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPD
Sbjct: 181 CNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPD 227

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BLAST of CmoCh06G011190 vs. ExPASy TrEMBL
Match: A0A6J1IW81 (LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111479790 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.8e-89
Identity = 163/219 (74.43%), Postives = 182/219 (83.11%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKAC+KTVYVVDLLSLEG PYHK+CF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSK-SEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRS 120
           HF+QLFKESGNF+ NFQ+K SEK+ ELTRT SKLS MF GTQD+C+ C+K VYPLEKV  
Sbjct: 61  HFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSTMFSGTQDKCSVCTKTVYPLEKV-- 120

Query: 121 SSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFM 180
                           +LEGECYHKNCFRCAHGGC+LTH SYAALDGVLYCKHHF+QLFM
Sbjct: 121 ----------------TLEGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFM 180

Query: 181 VKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA 218
           VKGNY HVL+AAANKK T  PA+RAE+D + QP SED A
Sbjct: 181 VKGNYNHVLEAAANKKNTTPPADRAEEDAESQPQSEDHA 201

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BLAST of CmoCh06G011190 vs. ExPASy TrEMBL
Match: A0A6J1E9W7 (LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC111432043 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.9e-88
Identity = 162/219 (73.97%), Postives = 182/219 (83.11%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           MAFTGTLDKCKAC+KTVYVVDLLSLEG PYHK+CF+CSHCKGTLSM+S+SWMDGVLYCK 
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSK-SEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRS 120
           HF+QLFKESGNF+ NFQ+K SEK+ ELTRT SKLS+MF GTQD+C+ C+K VYPLEKV  
Sbjct: 61  HFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSSMFSGTQDKCSVCTKTVYPLEKV-- 120

Query: 121 SSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFM 180
                           +LEGECYHKNCFRCAHGGC+LTH SYAALDGVLYCKHHF+QLFM
Sbjct: 121 ----------------TLEGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFM 180

Query: 181 VKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGA 218
           VKGNY HVL+AAANKK    PA+RAE+D + QP SED A
Sbjct: 181 VKGNYNHVLEAAANKKNATPPADRAEEDAESQPQSEDHA 201

[Close]

BLAST of CmoCh06G011190 vs. TAIR 10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 288.1 bits (736), Expect = 5.9e-78
Identity = 132/195 (67.69%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKC  C+KTVYVVD+LS+EG PYHK+CFRC+HCKGTL M+++S MDGVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSS 120
           HF+QLFKESGNF+ NFQ    +KPELTRT SK+S++FCGTQD+CAAC K VYPLEK    
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK---- 120

Query: 121 SPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMV 180
                         I +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM 
Sbjct: 121 --------------IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 177

Query: 181 KGNYTHVLQAAANKK 195
           KGNY HVLQAA +++
Sbjct: 181 KGNYAHVLQAANHRR 177

[Close]

BLAST of CmoCh06G011190 vs. TAIR 10
Match: AT3G61230.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 268.1 bits (684), Expect = 6.3e-72
Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 0


Query: 2   AFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPH 61
           AFTGT DKCKAC+KTVYV+DL++LEG PYHK+CFRCSHC GTL + ++S MDGVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FDQLFKESGNFA-NFQS--KSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRS 121
           F+QLFKESGNF+ NFQ+  K+EK  + T+  ++LS+ F GTQD+CAAC K VYPLEK   
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEK--- 122

Query: 122 SSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFM 181
                          +++EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+
Sbjct: 123 ---------------MTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFL 182

Query: 182 VKGNYTHVLQAAANKKATMTPAERAE-KDGKPQPDSED 216
            KGNY HVLQAAAN + +    ++ E K+ +  P  E+
Sbjct: 183 EKGNYNHVLQAAANHRRSTAEEDKTEPKEDEANPTEEE 202

[Close]

BLAST of CmoCh06G011190 vs. TAIR 10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 267.7 bits (683), Expect = 8.3e-72
Identity = 133/218 (61.01%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGTLDKCKAC+KTVYV+DLL+LEGN YHK+CFRC+HCKGTL ++++S MDGVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKESGNFA-NFQSKSEKKP--ELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVR 120
           HF+QLFKESGN++ NFQ+   +KP   LTRT SKLS+ F GTQD+CA C K VYPLEKV 
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKV- 120

Query: 121 SSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLF 180
                            ++EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF
Sbjct: 121 -----------------TMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLF 180

Query: 181 MVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSED 216
           + KG+Y HV QAAAN +       R+   G   P S+D
Sbjct: 181 LEKGSYNHVHQAAANHR-------RSASSGGASPPSDD 193

[Close]

BLAST of CmoCh06G011190 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 241.1 bits (614), Expect = 8.3e-64
Identity = 110/202 (54.46%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KC+AC KTVY V+LLS +G  YHK CF+CSHCK  L ++++S M+GV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKESGNFA-NFQSKS-----EKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLE 120
           HF+QLFKESG+F+ NFQS +     +  PEL RT S+L+ MF GTQD+CA C+K VYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFA 180
           KV                  ++E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFA
Sbjct: 121 KV------------------TVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFA 180

Query: 181 QLFMVKGNYTHVLQAAANKKAT 197
           QLF  KG+Y H++++A+ K+AT
Sbjct: 181 QLFKEKGSYNHLIKSASIKRAT 184

[Close]

BLAST of CmoCh06G011190 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 237.7 bits (605), Expect = 9.2e-63
Identity = 112/200 (56.00%), Postives = 149/200 (74.50%), Query Frame = 0


Query: 1   MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKP 60
           M+FTGT  KCKAC KTVY V+LLS +G  YHK+CF+C+HCK  L ++S+S M+GVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKESGNF-ANFQS--KSEKK--PELTRTNSKLSAMFCGTQDRCAACSKVVYPLEK 120
           HF+QLFKESG+F  NFQS  KS  K  PELTRT S+++  F GTQ++CA CSK VYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQ 180
           V                  ++E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQ
Sbjct: 121 V------------------TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQ 180

Query: 181 LFMVKGNYTHVLQAAANKKA 196
           LF  KG+Y H++++A+ K++
Sbjct: 181 LFKEKGSYNHLIKSASIKRS 182

The following BLAST results are available for this feature:

BLAST of CmoCh06G011190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECF5	8.3e-77	67.69	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q500W4	8.9e-71	60.09	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]
O80839	1.2e-70	61.01	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
O04193	1.2e-62	54.46	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.3e-61	56.00	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]

BLAST of CmoCh06G011190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVW8	1.7e-112	91.71	LIM domain-containing protein PLIM2b-like isoform X2 OS=Cucurbita moschata OX=36...	[more]
A0A6J1ICJ4	1.4e-111	90.78	LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FNB1	1.2e-107	80.82	LIM domain-containing protein PLIM2b-like isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1IW81	9.8e-89	74.43	LIM domain-containing protein PLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E9W7	2.9e-88	73.97	LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CmoCh06G011190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01780.1	5.9e-78	67.69	GATA type zinc finger transcription factor family protein	[more]
AT3G61230.1	6.3e-72	60.09	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	8.3e-72	61.01	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	8.3e-64	54.46	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	9.2e-63	56.00	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 102..172 e-value: 4.8E-9 score: 46.1 coord: 9..61 e-value: 3.3E-12 score: 56.6
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 135..176 e-value: 2.4E-8 score: 34.1 coord: 10..64 e-value: 6.7E-13 score: 48.7
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.1869
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 101..179 score: 11.682099
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 97..183 e-value: 9.9E-17 score: 62.8
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 6..74 e-value: 9.3E-19 score: 69.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 130..212 coord: 1..117
None	No IPR available	PANTHER	PTHR24206:SF69	LIM DOMAIN-CONTAINING PROTEIN PLIM2C	coord: 130..212 coord: 1..117
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 147..186
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..75
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 2..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G011190.1	CmoCh06G011190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding