CmoCh06G010240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G010240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine-rich splicing factor RS31-like
Location	Cmo_Chr06: 8013040 .. 8017617 (-)
RNA-Seq Expression	CmoCh06G010240
Synteny	CmoCh06G010240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTTTCGTGGACTGCAATTGGTATAATGGGTCTGCTAAGATGGTATGTGCCTTAGTAAGTTCAGATGTGCTCACATTGATAATTTTGATACCATGTTAAACTGCTCCATATTCTAATTGTTGAACCTAATATGTCGTATGTATAATCTTTTATGCATATTCTTAATAACTACTTGTATTATCGAATCGGTCTCGTACCAGGTACGAAGCATGAGACTTGATGATGTGAGATTCGTGGGGCTTCTCTTGGGCTGCAGTTATGGGAGCATGATTGCTAAAGGTCGACAACTCTTTGAACCAATGGAGAGTAAGTTTCCAATTACTTCCAATAGCTATTTGTTTGGTTGATCTATTAGATTCTTGTCGATCAGAATATGCTTATAATTTTGATCAAACAAGAGCACTTGATTGAGATTCAAATCACTCAACAAGTTAGGTCGACCATTGTCAAACTTAAATGATTTTAACTATGCAATCTAAGCTAAATAAAATTGCAAAAAAATTTAGCCAATGGCTAAAAGAATGTACAAATGCTCGTTTTATTACCTTTTTCAAGTCTATTTTACAAATATAACAGTAATGACTTTATATATTATTAAAATGAAGACCCTTCACCTTCCATCGATGAAGCATTTTAAGAATTCTAACTTTTATACTTTATGACCATAATAAGTCACGGTGCATACCTTATGACATAATTAGCTACTATGTAAATAAGCCTTAAAATTTTAATAGACGTTGTTTTTTTAATATATTTTTTTAAATATTTTTAATAAAAAAATTTAAACTAATAATAGAAACCAAATGGAGTGTGATTCAATGCATAGAGGGTAAAATAGTATATTTACACACGGCTTCACTGAATGAACTCATAATTGGTCCTTCTTCCGCTTGAGGCTGAATCGATTTTATCACTCTCAAAATTTTAAATCCCCAAAAGACCCTTTTGGACAGTCTAACGGTTCAATCTCCGTTGATGAAAGTCTTGAATAAAAAGCCGGATAATCGGACGGTCTGAAATTATCTACAGTGAAAATACTAGGGCTTTCTTCTGGTATTTAAAATGAGCTAAAAATTGGATCATATAGGGCTCTTCAAAAAGATACAGGCTTTCTCTTCCTCTTCCTCTCTCCTAGGGTTTTTCTTGTGTTCGAGTCCAAGAATCTGCAAGGTTTGTTTGTAATCATTTGATCCATGCTATTCTAAGCATTTTTCATTCGCTACTTGATCGATTTACTTCTTGTTTCTGGTCAAACTCTGAAAGTGAGTTCTTCGTTAACGCATTCCTTTATCCTCTCTTATACCATTGATCTCTTATAGTTTAACTGGAAAAAGAATAGATATCACTATGTTGGTGAAGTTGTTTACTAGTTTCTTTTTATGGTCTTCTCATTTTGTTAACCTTGGGACTTGTTGGCTTTGTTTTCTACAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTATATTGCAATTTCTTTGTTATACCATGCAGTGTCGTTTTTAACGAAGATGTTCTAATGTTGAATATTTCTATTTCTAAGGTGGTATGAGGGAACTGTGGTGCTTACTTCAATTTTTTTGTTTTTGTTTATTGCGAAACTGTAAATTTCCTTACCTAGTTTTGACATGCGAAGGTAATAGATGTCTGGAAAAGACTGTGTTCAACTTGATTTAGGATATGCGTATTGGATGTTGCATTTGGATTACGGGGTATATTTTAATTAAATGCTGCAATATTCCCAGTGAACCACCTTCCTTTTGTAGTGTGTCGATCTTGGTATTCTCACTAGGACCTGCATATATGTATGCATTCATGGATGACTTTATTGTTTTGGGATTTACAAAGTGTTGTCAATTGTTATTTCCTTGTTTAAACTTTCTAGTTGCTGATCTTTTTCTTGTTACTTATGGGCTTTTAGTTTCGCTTTCATTGTTTGTAATCATCTTAATTACTCTATATTTATTTTTAAATTTTATATTTGTCTTCTGGAATTTTCTTGTCTCTTACCCACCTTCCCTGACATCCTTAATCCTACGTAGTTATCGTTCAGTTAATGATTTTAGACATCTTGGGTTTTCTGGTGTATGAAATTATGGTATTTTAGTGCGAGGATGTTCCACTGGTGCTAATACTTGGTATTTCAGTGCGTGGGATGCTCCACTGACCCTAATACTAGGTACAAAAGTTGTGTCAAGTTTTTATCAATAAGACAAGAAATTGATGTTTTTTTTTAAAATTCTAAAACCCTGTTCAGTGACATGGATGCATAGCTATTATGCTATGATAATATCCGCTGATCCATTTTTTCTGATGAAAACTTGATGGGAGGCAAAAATTTACTATTTTTATGGGGAAAGCCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTACTAAGGAAAATGAACCAAGCTCCTATCTGGGCTCATCACCATCTGTGCATAAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTAGCTTCATCTAAAGATATCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCTTCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTCGCAATTCATCAGAATCGTCTTAATGGATGTTCTATATCTCATGCCTTGCCTACCTATCACCTCTGATCATAGGACATCACTGAATTCTGGTCATGCCTTCCATTTGATAATAGTGGCTGAATGAATCTGTCTTGCCATGCCTTCCATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGCATGGTTGAAATTTTGGATTAAAACCTTTAGTATGCAACCATCTTATTTCATCATGCAACGTCTCTACAGCTAAATGTGCATCAGTCTTCCCATATTTTCAGGTGTTGTACTTTTTATAGTTTATCCCAGGGAAAGAAATCATGAGCCTGAGTGACAATACCTGCTAAATAGATAATGCTTCAATATCTTACCGTATTTTATATCTCTAATTGTTCTATTTTGCAGGTTTTGCTTTTGTTTACTTTGAAGACGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTAGGCCTTTCTCCCACCGTTGTTGCCCCCTTTTTTGGGTCTATGCATTTTAGAAGCTGGTTTATTTCATGCTTTGAAAATCTCTCTTTCTTTTCATATATGGCAACCAATAGTTGATTTTAACTTTAGCTTTTTGTTTGGTTTGGTTAGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCTATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTTCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACCCACATGAGGTTAGCAGAGTTTTGGGTTTCCCACATGGTTGTTTCTCCTTTCAATTGGCATATTTAATTTCTTTTACTCTCTAAAATACTGTATTGGCTTTATAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAACAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCGTTGCGCCGTCGACCAAGTCCTGACTATGGGCCACGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGCAGATACCGCAGGTAATTTTTTTTTTTATCTTTTTGATAGTTGGCTCAGCTTCCATTTGAGTTGTTGTCGCATATCTCTTTTAGCTTATAAATTCAAGCTAACTCCCCGTTTTTCATAACTATGTGTTGACAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGTTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGCATTAGTAGTTGCTTTGGTGTACAACGTTTTACCAAGGCTGTCCTGTCTTAACGATTTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCATTGCATGAGCTTCGTTGAATTCCCTCACTGAGGCCCTTTTATTTTTCATCATTTCTCTCCGCCCCCAAGTAAGGTCAGTTCTTTTGAATC

mRNA sequence

ATGGGTGGTTTCGTGGACTGCAATTGGTATAATGGGTCTGCTAAGATGGTACGAAGCATGAGACTTGATGATGTGAGATTCGTGGGGCTTCTCTTGGGCTGCAGTTATGGGAGCATGATTGCTAAAGGTCGACAACTCTTTGAACCAATGGAGAGCTTTCTCTTCCTCTTCCTCTCTCCTAGGGTTTTTCTTGTGTTCGAGTCCAAGAATCTGCAAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGACGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCTATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTTCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAACAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCGTTGCGCCGTCGACCAAGTCCTGACTATGGGCCACGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGCAGATACCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGTTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGCATTAGTAGTTGCTTTGGTGTACAACGTTTTACCAAGGCTGTCCTGTCTTAACGATTTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCATTGCATGAGCTTCGTTGAATTCCCTCACTGAGGCCCTTTTATTTTTCATCATTTCTCTCCGCCCCCAAGTAAGGTCAGTTCTTTTGAATC

Coding sequence (CDS)

ATGGGTGGTTTCGTGGACTGCAATTGGTATAATGGGTCTGCTAAGATGGTACGAAGCATGAGACTTGATGATGTGAGATTCGTGGGGCTTCTCTTGGGCTGCAGTTATGGGAGCATGATTGCTAAAGGTCGACAACTCTTTGAACCAATGGAGAGCTTTCTCTTCCTCTTCCTCTCTCCTAGGGTTTTTCTTGTGTTCGAGTCCAAGAATCTGCAAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGACGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCTATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTTCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAACAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCGTTGCGCCGTCGACCAAGTCCTGACTATGGGCCACGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGCAGATACCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGA

Protein sequence

MGGFVDCNWYNGSAKMVRSMRLDDVRFVGLLLGCSYGSMIAKGRQLFEPMESFLFLFLSPRVFLVFESKNLQARLIVSTMKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIRRSRT

Homology

[Close]

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 338.6 bits (867), Expect = 8.2e-92
Identity = 186/264 (70.45%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 259
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 260 T---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSPDCERRKS 319
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SPD  RR S
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 320 PDYARNRSPEYGRYRSRSPIRRSR 336
            DY R RSP Y RYRSRSP+ R R
Sbjct: 241 -DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.3e-84
Identity = 177/263 (67.30%), Postives = 205/263 (77.95%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 140 GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 199
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 200 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 259
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 260 RRTAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDCERRKSP 319
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPD  RR S 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSS- 240

Query: 320 DYARNRSPEYGRYRSRSPIRRSR 336
           DY R R+   G  RSRSPI+R+R
Sbjct: 241 DYGRARARSPGYDRSRSPIQRAR 249

[Close]

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-67
Identity = 147/266 (55.26%), Postives = 188/266 (70.68%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 140 GHDRRRLSVEWARGERG---RHRDGS-KSMANQRPTKTLFVINFDPIHTRVRDIERHFEP 199
           G   RRL VEW + ERG   R   GS +S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 200 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 259
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +   
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 260 PRRTAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPD- 319
            RR           RRSPSP +R R SPDYG  +     Y   R+ R SPD  RR+SP  
Sbjct: 181 RRRDR----SPERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 320 YARNR--SPEYGRYR--SRSPIRRSR 336
           Y ++R  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 4.5e-66
Identity = 144/269 (53.53%), Postives = 181/269 (67.29%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKP+F GNF YD R+S+LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 140 GHDRRRLSVEWARGER---GRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 199
           G   RRL VEW + +R   GR     +S +  RP+KTLFVINFD  +TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 200 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 259
           GK++NVRIRRNF+F+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 260 RRTAYGRPGDSPYRRSPSPLRR-RPSPDYG----PRSPAYDRYN---GPRERRKSPDCER 319
           RR           RRSPSP RR R SPDYG    P +   +R +   G   R  SP    
Sbjct: 181 RRDR----SPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRA 240

Query: 320 RKSPDYARN-------RSPEYGRYRSRSP 331
           R SPDY R+        SPE G  R+RSP
Sbjct: 241 RLSPDYKRDDRRRERVASPENGAVRNRSP 265

[Close]

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot
Match: Q9NEW6 (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=6239 GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13
Identity = 87/274 (31.75%), Postives = 117/274 (42.70%), Query Frame = 0


Query: 83  IFVGNFGYDTRQSELERAFAKYGRVDRIDMKSG----FAFVYFEDERDADDAIRGLDNMP 142
           ++VGN   D R+ E+E  F KYGR+  +D+KSG    FAFV FED RDA+DA+R  D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 143 FGHDRRRLSVEWARG------------ERGRH--------RDGSKSMANQRPTKTLFVIN 202
           F  D RR+ VE+ RG            + G H        R G +    QR T    ++ 
Sbjct: 71  F--DGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 203 FDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSV 262
             P     +D++ H    G V    + R           + T  +E T       R   V
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVAR-----------DGTGVVEFT-------RYEDV 190

Query: 263 EYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPR 322
           +YA+R         DD+  R+     G++ Y      +R R     G  S    R    R
Sbjct: 191 KYAVR-------KLDDTKFRS---HEGETAY------IRVREDNSSGGGSGGGGR---DR 245

Query: 323 ERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIR 333
            R +SP  ERR SP Y+  RS    R RSRS  R
Sbjct: 251 SRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSR 245

[Close]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL
Match: A0A6J1FYP8 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448937 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 7.3e-144
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF
Sbjct: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 259
           LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT
Sbjct: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 180

Query: 260 AYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRS 319
           AYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRS
Sbjct: 181 AYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRS 240

Query: 320 PEYGRYRSRSPIRRSRT 337
           PEYGRYRSRSPIRRSRT
Sbjct: 241 PEYGRYRSRSPIRRSRT 257

[Close]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL
Match: A0A6J1ICY3 (serine/arginine-rich splicing factor RS31-like OS=Cucurbita maxima OX=3661 GN=LOC111474713 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 5.6e-136
Identity = 248/257 (96.50%), Postives = 248/257 (96.50%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF
Sbjct: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 259
           LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT
Sbjct: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 180

Query: 260 AYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRS 319
           AYG PGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPR        ERRKSPDYARNRS
Sbjct: 181 AYGPPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPR--------ERRKSPDYARNRS 240

Query: 320 PEYGRYRSRSPIRRSRT 337
           PEYGRYRSRSPIRRSRT
Sbjct: 241 PEYGRYRSRSPIRRSRT 249

[Close]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL
Match: A0A6J1IBE0 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473622 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 4.8e-135
Identity = 247/257 (96.11%), Postives = 247/257 (96.11%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF
Sbjct: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 259
           LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT
Sbjct: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 180

Query: 260 AYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPDYARNRS 319
           AYG PGDSPYRRSPSPLRRRPSPDYGP SPAYDRYNGPR        ERRKSPDYARNRS
Sbjct: 181 AYGPPGDSPYRRSPSPLRRRPSPDYGPCSPAYDRYNGPR--------ERRKSPDYARNRS 240

Query: 320 PEYGRYRSRSPIRRSRT 337
           PEYGRYRSRSPIRRSRT
Sbjct: 241 PEYGRYRSRSPIRRSRT 249

[Close]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL
Match: A0A6J1FY41 (serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448937 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 4.2e-123
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 114 SGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 173
           SGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 9   SGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 68

Query: 174 LFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILD 233
           LFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILD
Sbjct: 69  LFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILD 128

Query: 234 RVVSVEYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDR 293
           RVVSVEYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDR
Sbjct: 129 RVVSVEYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDR 188

Query: 294 YNGPRERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIRRSRT 337
           YNGPRERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIRRSRT
Sbjct: 189 YNGPRERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIRRSRT 231

[Close]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL
Match: A0A6J1D279 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016334 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.7e-122
Identity = 230/260 (88.46%), Postives = 241/260 (92.69%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           M+PIFVGNFGYDTRQSELER FAKYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDNM F
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNMAF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           G+DRRRLSVEWARGERGRHRDGSKS+ANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSIANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRT 259
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRR 
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 260 AYGRPGD-SPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGPRERRKSPDCERRKSPDYAR 319
           AYGRPGD SPYRRSPSP  RRRPSPDYG  RSPAYDRYNGP         ERR+SPDY R
Sbjct: 181 AYGRPGDSSPYRRSPSPAFRRRPSPDYGRARSPAYDRYNGP--------YERRRSPDYGR 240

Query: 320 NRSPEYGRYRSRSPIRRSRT 337
           NRSPEYGR+RSRSPIRRSRT
Sbjct: 241 NRSPEYGRFRSRSPIRRSRT 252

[Close]

BLAST of CmoCh06G010240 vs. TAIR 10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 338.6 bits (867), Expect = 5.8e-93
Identity = 186/264 (70.45%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 140 GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 199
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 200 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 259
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 260 T---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSPDCERRKS 319
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SPD  RR S
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 320 PDYARNRSPEYGRYRSRSPIRRSR 336
            DY R RSP Y RYRSRSP+ R R
Sbjct: 241 -DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of CmoCh06G010240 vs. TAIR 10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 312.4 bits (799), Expect = 4.5e-85
Identity = 177/263 (67.30%), Postives = 205/263 (77.95%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 140 GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 199
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 200 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 259
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 260 RRTAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDCERRKSP 319
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPD  RR S 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSS- 240

Query: 320 DYARNRSPEYGRYRSRSPIRRSR 336
           DY R R+   G  RSRSPI+R+R
Sbjct: 241 DYGRARARSPGYDRSRSPIQRAR 249

[Close]

BLAST of CmoCh06G010240 vs. TAIR 10
Match: AT2G46610.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 262.3 bits (669), Expect = 5.3e-70
Identity = 154/233 (66.09%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 110 IDMKSGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWAR---GERGRHRDGSKSMA 169
           + + +G+AFVYFEDERDA+DAIR  DN  FG+ RR+LSVEWA+   GERG+ RDG K+++
Sbjct: 5   LHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVS 64

Query: 170 NQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECT 229
           NQRPTKTLFVINFDPI TR RD+ERHFEPYGKVLNVR+RRNF+FVQF TQE+ATKAL+ T
Sbjct: 65  NQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDST 124

Query: 230 HMSKILDRVVSVEYALRDDGERGDPYDDSPRRTAYGRPGDSPYRRSPSPL-RRRPSPDY- 289
           H SK+LD+VVSVEYALR+ GER D Y  S R            RRSPSP+ RRRPSPDY 
Sbjct: 125 HNSKLLDKVVSVEYALREAGEREDRYAGSRR------------RRSPSPVYRRRPSPDYT 184

Query: 290 GPRSPAYDRYNGPR--ERRKSPDCERRKSPDYARNRSPEYGRYRSRSPIRRSR 336
             RSP YDRY GP   ERRKSPD  RR S DY R R+   G  RSRSPI+R+R
Sbjct: 185 RRRSPEYDRYKGPAPYERRKSPDYGRRSS-DYGRARARSPGYDRSRSPIQRAR 223

[Close]

BLAST of CmoCh06G010240 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 256.9 bits (655), Expect = 2.2e-68
Identity = 147/266 (55.26%), Postives = 188/266 (70.68%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 140 GHDRRRLSVEWARGERG---RHRDGS-KSMANQRPTKTLFVINFDPIHTRVRDIERHFEP 199
           G   RRL VEW + ERG   R   GS +S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 200 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 259
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +   
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 260 PRRTAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPD- 319
            RR           RRSPSP +R R SPDYG  +     Y   R+ R SPD  RR+SP  
Sbjct: 181 RRRDR----SPERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 320 YARNR--SPEYGRYR--SRSPIRRSR 336
           Y ++R  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of CmoCh06G010240 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 256.9 bits (655), Expect = 2.2e-68
Identity = 147/266 (55.26%), Postives = 188/266 (70.68%), Query Frame = 0


Query: 80  MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 139
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 140 GHDRRRLSVEWARGERG---RHRDGS-KSMANQRPTKTLFVINFDPIHTRVRDIERHFEP 199
           G   RRL VEW + ERG   R   GS +S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 200 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 259
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +   
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 260 PRRTAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDCERRKSPD- 319
            RR           RRSPSP +R R SPDYG  +     Y   R+ R SPD  RR+SP  
Sbjct: 181 RRRDR----SPERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 320 YARNR--SPEYGRYR--SRSPIRRSR 336
           Y ++R  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

The following BLAST results are available for this feature:

BLAST of CmoCh06G010240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92964	8.2e-92	70.45	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	6.3e-84	67.30	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
P92965	3.1e-67	55.26	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92966	4.5e-66	53.53	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
Q9NEW6	1.5e-13	31.75	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of CmoCh06G010240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYP8	7.3e-144	100.00	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1ICY3	5.6e-136	96.50	serine/arginine-rich splicing factor RS31-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1IBE0	4.8e-135	96.11	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1FY41	4.2e-123	100.00	serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1D279	2.7e-122	88.46	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Momordica charantia...	[more]

BLAST of CmoCh06G010240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61860.1	5.8e-93	70.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	4.5e-85	67.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.2	5.3e-70	66.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	2.2e-68	55.26	arginine/serine-rich splicing factor 35	[more]
AT4G25500.4	2.2e-68	55.26	arginine/serine-rich splicing factor 35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 173..239 e-value: 3.0E-15 score: 66.7 coord: 82..149 e-value: 6.2E-15 score: 65.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 174..236 e-value: 1.9E-10 score: 40.4 coord: 83..140 e-value: 3.4E-15 score: 55.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 172..243 score: 14.760482
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 81..153 score: 16.909462
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 166..250 e-value: 1.0E-17 score: 66.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..165 e-value: 6.9E-21 score: 76.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..328
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 83..300
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 173..242 e-value: 3.86417E-41 score: 136.524
IPR029537	Arginine/serine-rich-splicing factor RSP31/31A	PANTHER	PTHR23147:SF146	SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED	coord: 83..300
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 83..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010240.1	CmoCh06G010240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding