CmoCh06G010180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G010180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase II subunit 1-like
Location	Cmo_Chr06: 7991868 .. 7994005 (-)
RNA-Seq Expression	CmoCh06G010180
Synteny	CmoCh06G010180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTCCAATTTTTAAAAAATTTTCAATATTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCAATCACCATTAAAATACCTTAGTTCATCAATTATAATTTATATTTAATTTATTTTTATATACATTCTTCTCATTTTTCTTGATAAGAATATAATATAATAATTTAACCTTTGACTAAAAAATTTATATTTCTTAATTAATAATTGAGCTATACTTTTTTTCTGCCAAAACATGGAGGACTTTAATATGTACATTGTACTTTCTTAATTAGTTAATATATATACGTATATGCATTTTTCGATCTTACAATCCACCTTCTTTGTGATCCAGCATTCTCGCTAACACTCGTTCACTTTTTTAATCGATGTGGGACCCTCCCAATTCATTCCCTTCGAGGCTCAACGTCCTTGCTGGCACATCGCCTCGTGTCTACCCCCTTCCGATCGATGTGGGACTCCTCTCAATCCATCCCTTTCAAGGCCCAGCGTTTTTGCTGGCACACTGCCTTGTGTCCAACCCCTTTGGAGTTTAGCGTCCTTGTTGGCATATCACCAAGAGTGTTTTGTTTTCCGACTCAACCGATGTCGGATCTCACAATCCACTCTCTTTCGGGGCCAGCATCCTCGCTGGCACTCGTTTCCTTCTCTAATCGATGTGGGACCCACCTAATCCACCCCCTTCAAGGCCCAGCATCCTTGTTGGCACTCGTTCCCTTCTCTAATCGATGTGGGACCCTCTCAATCCACACCCTTCGAGGCTCAGTGTCTTTGTTGGCACACTGCCTCGTGTCGACCCCCCTTCAGGGTTCAGCCTCCTCGTTGGCACATAGCTCGGTATGTGTCTCTGATACCAACTGTATCAGTCCAAACCTACCGCTAGCACATACTGTCTTATGTCTTATTGAGAGGTTTCCACACTCTTATAGAGAATATTTTGTTCTCCTTTCTAATTGTTGTGGGATCTCACCAAAAAAAAAAAAAAAAACTTTTACTCGTCTTAGTGTTATGATCTTATATTGTTAAACAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAAAAAAAAAAAAGAGTGATTAATAATAAAACCTATTTTCAGATTATTCTATCCATTCAAAC

mRNA sequence

TCTTCTCCAATTTTTAAAAAATTTTCAATATTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAAAAAAAAAAAAGAGTGATTAATAATAAAACCTATTTTCAGATTATTCTATCCATTCAAAC

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAGTGGTTCGACCCAGGAGCCCACCGGAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACTACCAGCGAGAAGCCTGCGAAAACCGACCATCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTAATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA

Protein sequence

MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH

Homology

[Close]

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL
Match: A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.9e-162
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180

Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
           PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240

Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
           SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300

Query: 301 DSRH 305
           DSRH
Sbjct: 301 DSRH 304

[Close]

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL
Match: A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.7e-158
Identity = 297/304 (97.70%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180

Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
           PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240

Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
           SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300

Query: 301 DSRH 305
           DSRH
Sbjct: 301 DSRH 304

[Close]

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL
Match: A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 5.2e-157
Identity = 296/304 (97.37%), Postives = 298/304 (98.03%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
           RITSPVRKY SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTSEK 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPEVQQKSVLYQKTTSEK
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSEK 180

Query: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240
           PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY
Sbjct: 181 PAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSY 240

Query: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300
           SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH
Sbjct: 241 SSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVH 300

Query: 301 DSRH 305
           DSRH
Sbjct: 301 DSRH 304

[Close]

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL
Match: A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 2.2e-107
Identity = 218/309 (70.55%), Postives = 253/309 (81.88%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP TA R +  P   A +EPEV+PSA  T N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTS 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
           EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ +K P H
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 ADSVHDSRH 305
            DS+H+SRH
Sbjct: 301 GDSIHESRH 309

[Close]

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL
Match: A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 2.2e-107
Identity = 218/309 (70.55%), Postives = 253/309 (81.88%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP TA R +  P   A +EPEV+PSA  T N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTS 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240
           EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ +K P H
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 ADSVHDSRH 305
            DS+H+SRH
Sbjct: 301 GDSIHESRH 309

[Close]

BLAST of CmoCh06G010180 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-13
Identity = 105/364 (28.85%), Postives = 149/364 (40.93%), Query Frame = 0


Query: 18  PRPGTAPRLDVPPPAATSEP--EVYPSAPRTANVLQTSPIKERSPRITSPVRKYP----- 77
           PRP +   L V PPA    P  +  P +P       + P +++ P +T P +K P     
Sbjct: 29  PRPTSRSSLVVRPPAKQPSPPRQRQPRSPPRQQDPPSPPRQQQQP-LTPPRQKAPPTSPP 88

Query: 78  ---SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPR--- 137
              SP  SP  R  +P T P+    PPP         RSS  + P   +     PPR   
Sbjct: 89  QERSPYHSPPSRHMSPPTPPKAATPPPP-------PPRSSYTSPPSPKEVQEALPPRKPN 148

Query: 138 SPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSP-----------PEVQQKSVLY 197
           SP    +S+ +  +       PS  + H   P  R  SP            E  QK++L 
Sbjct: 149 SPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSPYSLPASLLHSERETTQKNILT 208

Query: 198 QKTTSEKPAKTDHRAS---------------EYSSGKPQQ----KQTHQQQSD------- 257
            + TS+      H  +                Y+  +  Q    K+ H+Q S        
Sbjct: 209 AEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQNQNHQGNNPKKMHRQPSSSDSENIM 268

Query: 258 ---VINIKGENVGAVMHITQSSDATET-----------------HKKKPTVSYSSENEKD 303
              VI I GEN GAVM I +S    +T                  ++  + S SS +E +
Sbjct: 269 STRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSSSSSDEGE 328

[Close]

BLAST of CmoCh06G010180 vs. TAIR 10
Match: AT1G75260.1 (oxidoreductases, acting on NADH or NADPH )

HSP 1 Score: 43.1 bits (100), Expect = 4.6e-04
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 208 VINIKGENVGAVMHITQSSDAT--ETH----------KKKPTVSYSSENEKDSNKSSSNM 267
           V  + GEN GA M I    D    E H          +   T +  +EN KD +++    
Sbjct: 345 VYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSNPDESSNTTATETENPKD-DEAEEEA 404

Query: 268 PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF 290
              +++N N QG+NNSI+  SS+S  DPG+H++F
Sbjct: 405 SFTAYINGNTQGINNSIVVESSVSENDPGVHMSF 437

The following BLAST results are available for this feature:

BLAST of CmoCh06G010180 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G010180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1L2	1.9e-162	100.00	DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IEX0	4.7e-158	97.70	DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1IHF4	5.2e-157	97.37	DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A5A7TZ60	2.2e-107	70.55	Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m...	[more]
A0A1S3AVJ6	2.2e-107	70.55	microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365...	[more]

BLAST of CmoCh06G010180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	4.1e-13	28.85	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]
AT1G75260.1	4.6e-04	34.04	oxidoreductases, acting on NADH or NADPH	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..141
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 1..204
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 1..204
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 195..300
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 195..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G010180.1	CmoCh06G010180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity