CmoCh06G009300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G009300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr06: 6788585 .. 6790271 (-)
RNA-Seq Expression	CmoCh06G009300
Synteny	CmoCh06G009300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCTTCTATTGAGGAAGCGCCACAGCTGGACTTAAAACCACTACCACCTAACCTTAAGTATGCTTATTTAGGTGATAAGAAGACACTACCCATCATCATCTCAGCGACACTATCCTCGACTCAAGAGGATATGCTCCTAGAAACATTGAAGAAGCACAAGGGGGCGATAGGTTGGACATTGGCAGATATAAAAGGAATTAGCCCTTCACTATGCATGCACAAAATACAATTGGAGGAAGGAAAAGTTAAGTCCATTGAGCAACAAAGACGATTAAATCCCATGATGAAGGAGGTTGTTAGAAAGGAGATTCTCAAATGGCTAGATGCTGGAATAATTTATCCAATTGCAAATAGCAGCTGGGTCAATCCTATTCAATGTGTTCCGAAGAAAGGAGGGATAACAGTAATGGCAAAGGAGAACAATGAGTTGATCCCCACTAGAATAGTGAATGGATGGAGAATTTGCATGGATTATAGAAGGCTAAACAAAGCGACATGTAAGGATCATTTTCCCTTACCATTCATTGATCAAATGCTTGATAGGCTTGCTGGAAAGTCACATTATTGCTTCTTGGATGGTTATTCGGGATACAATCAAATTACAATCAATCCAGAAGATCAAGAGAAAACTACATTCACATGCCCATATGGAATTTTTGCCTTTAGACGAATGCCCTTTGGACTATGTAATGCTCCAGCGACATTTCAACGTTGCATGATGGCCATTTTTACAGATATGGTAGAAACAATTATGGAGATATTCATGGATGATTTTTCGGTTTATGGAGAATCTTTTGAGACTTGTTTGTGCAATTTAGGGAAGGTTCCACAAAGATGAGAAGAATCTTGTACTGAATTGGGAAAAATGTCATTTTATGGTCAATGAGGGAATAGTGTTAGGCCACAAGATCTCAAGAAGAGGAATAGAAGTTGATAGAGCCAAGATAGAAGCTATTGAAAGATTGAATCCACCTACGTCAGTTAAAGGTATAAAAAGCTTTTTGGGCCATGCAGGGTTTTATAGGAGGTTTATTAAAGATTTCTCCAAGATTGCAAAACCATTGTGTAGTTTGTTGGAGTCAAATAGAAAATTCGTTTTTGACAAACAATGCATGACTGCCTTCCAAGCATTAAAGACAGCGCTGACCACAGCTCCTATAATGTCAACACTCGATTGGAATTCACCATTTGAGTTGATGTGTGATGCTAGTGGCCATGCTGTGGGGGCAATGTTAGGACAGAAAAAGGGGAAGGTACTTCATCCTATCTATTATGCCAGCAAAACGTTGAATGAGGCTCAAGTGAATTATACAACCACTGAAAAAGAATTGTTGGCCGTAGTATTCGCTGTTGAAAAGTTCAGAGCTTATTTATTTGGAGCAAAGGTGAAACTGTACACTGACCATGCAGCAATCAAGCACCTAATGATGAAACCGAATGCCAAGCCAAGATTAATTAGATGGATTCTACTGTTACAAGAGTTCGAGATAGAAATCGTGGACACGAAAGGAGCTAATAACCATGTAGCGGATCATTTATCTAGAATGGAGAACATGGAAGAAAAGGTCAATAGCAAAGAAATTGATGATGCATTTCCGGATGAACAGCTGCTCGAGATAAACAGCAGTAGCAGCAGCTACAGCAGTAGCAGAATGACAGCAACTCCATGGATGCAGACATAG

mRNA sequence

ATGAGACCTTCTATTGAGGAAGCGCCACAGCTGGACTTAAAACCACTACCACCTAACCTTAAGTATGCTTATTTAGGTGATAAGAAGACACTACCCATCATCATCTCAGCGACACTATCCTCGACTCAAGAGGATATGCTCCTAGAAACATTGAAGAAGCACAAGGGGGCGATAGGTTGGACATTGGCAGATATAAAAGGAATTAGCCCTTCACTATGCATGCACAAAATACAATTGGAGGAAGGAAAAGTTAAGTCCATTGAGCAACAAAGACGATTAAATCCCATGATGAAGGAGGTTGTTAGAAAGGAGATTCTCAAATGGCTAGATGCTGGAATAATTTATCCAATTGCAAATAGCAGCTGGGTCAATCCTATTCAATGTGTTCCGAAGAAAGGAGGGATAACAGTAATGGCAAAGGAGAACAATGAGTTGATCCCCACTAGAATAGTGAATGGATGGAGAATTTGCATGGATTATAGAAGGCTAAACAAAGCGACATGTAAGGATCATTTTCCCTTACCATTCATTGATCAAATGCTTGATAGGCTTGCTGGAAAGTCACATTATTGCTTCTTGGATGGTTATTCGGGATACAATCAAATTACAATCAATCCAGAAGATCAAGAGAAAACTACATTCACATGCCCATATGGAATTTTTGCCTTTAGACGAATGCCCTTTGGACTATGTAATGCTCCAGCGACATTTCAACGTTGCATGATGGCCATTTTTACAGATATGGGAAGGTTCCACAAAGATGAGAAGAATCTTGTACTGAATTGGGAAAAATGTCATTTTATGGTCAATGAGGGAATAGTGTTAGGCCACAAGATCTCAAGAAGAGGAATAGAAGTTGATAGAGCCAAGATAGAAGCTATTGAAAGATTGAATCCACCTACGTCAGTTAAAGGTATAAAAAGCTTTTTGGGCCATGCAGGGTTTTATAGGAGGTTTATTAAAGATTTCTCCAAGATTGCAAAACCATTGTGTAGTTTGTTGGAGTCAAATAGAAAATTCGTTTTTGACAAACAATGCATGACTGCCTTCCAAGCATTAAAGACAGCGCTGACCACAGCTCCTATAATGTCAACACTCGATTGGAATTCACCATTTGAGTTGATGTGTGATGCTAGTGGCCATGCTGTGGGGGCAATGTTAGGACAGAAAAAGGGGAAGGTACTTCATCCTATCTATTATGCCAGCAAAACGTTGAATGAGGCTCAAGTGAATTATACAACCACTGAAAAAGAATTGTTGGCCGTAGTATTCGCTGTTGAAAAGTTCAGAGCTTATTTATTTGGAGCAAAGGTGAAACTGTACACTGACCATGCAGCAATCAAGCACCTAATGATGAAACCGAATGCCAAGCCAAGATTAATTAGATGGATTCTACTGTTACAAGAGTTCGAGATAGAAATCGTGGACACGAAAGGAGCTAATAACCATGTAGCGGATCATTTATCTAGAATGGAGAACATGGAAGAAAAGGTCAATAGCAAAGAAATTGATGATGCATTTCCGGATGAACAGCTGCTCGAGATAAACAGCAGTAGCAGCAGCTACAGCAGTAGCAGAATGACAGCAACTCCATGGATGCAGACATAG

Coding sequence (CDS)

ATGAGACCTTCTATTGAGGAAGCGCCACAGCTGGACTTAAAACCACTACCACCTAACCTTAAGTATGCTTATTTAGGTGATAAGAAGACACTACCCATCATCATCTCAGCGACACTATCCTCGACTCAAGAGGATATGCTCCTAGAAACATTGAAGAAGCACAAGGGGGCGATAGGTTGGACATTGGCAGATATAAAAGGAATTAGCCCTTCACTATGCATGCACAAAATACAATTGGAGGAAGGAAAAGTTAAGTCCATTGAGCAACAAAGACGATTAAATCCCATGATGAAGGAGGTTGTTAGAAAGGAGATTCTCAAATGGCTAGATGCTGGAATAATTTATCCAATTGCAAATAGCAGCTGGGTCAATCCTATTCAATGTGTTCCGAAGAAAGGAGGGATAACAGTAATGGCAAAGGAGAACAATGAGTTGATCCCCACTAGAATAGTGAATGGATGGAGAATTTGCATGGATTATAGAAGGCTAAACAAAGCGACATGTAAGGATCATTTTCCCTTACCATTCATTGATCAAATGCTTGATAGGCTTGCTGGAAAGTCACATTATTGCTTCTTGGATGGTTATTCGGGATACAATCAAATTACAATCAATCCAGAAGATCAAGAGAAAACTACATTCACATGCCCATATGGAATTTTTGCCTTTAGACGAATGCCCTTTGGACTATGTAATGCTCCAGCGACATTTCAACGTTGCATGATGGCCATTTTTACAGATATGGGAAGGTTCCACAAAGATGAGAAGAATCTTGTACTGAATTGGGAAAAATGTCATTTTATGGTCAATGAGGGAATAGTGTTAGGCCACAAGATCTCAAGAAGAGGAATAGAAGTTGATAGAGCCAAGATAGAAGCTATTGAAAGATTGAATCCACCTACGTCAGTTAAAGGTATAAAAAGCTTTTTGGGCCATGCAGGGTTTTATAGGAGGTTTATTAAAGATTTCTCCAAGATTGCAAAACCATTGTGTAGTTTGTTGGAGTCAAATAGAAAATTCGTTTTTGACAAACAATGCATGACTGCCTTCCAAGCATTAAAGACAGCGCTGACCACAGCTCCTATAATGTCAACACTCGATTGGAATTCACCATTTGAGTTGATGTGTGATGCTAGTGGCCATGCTGTGGGGGCAATGTTAGGACAGAAAAAGGGGAAGGTACTTCATCCTATCTATTATGCCAGCAAAACGTTGAATGAGGCTCAAGTGAATTATACAACCACTGAAAAAGAATTGTTGGCCGTAGTATTCGCTGTTGAAAAGTTCAGAGCTTATTTATTTGGAGCAAAGGTGAAACTGTACACTGACCATGCAGCAATCAAGCACCTAATGATGAAACCGAATGCCAAGCCAAGATTAATTAGATGGATTCTACTGTTACAAGAGTTCGAGATAGAAATCGTGGACACGAAAGGAGCTAATAACCATGTAGCGGATCATTTATCTAGAATGGAGAACATGGAAGAAAAGGTCAATAGCAAAGAAATTGATGATGCATTTCCGGATGAACAGCTGCTCGAGATAAACAGCAGTAGCAGCAGCTACAGCAGTAGCAGAATGACAGCAACTCCATGGATGCAGACATAG

Protein sequence

MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFHKDEKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPWMQT

Homology

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BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.5e-68
Identity = 160/434 (36.87%), Postives = 237/434 (54.61%), Query Frame = 0


Query: 98  KEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRIC 157
           ++ V  +I   L+ GII   +NS + +PI  VPKK   +   K             +RI 
Sbjct: 220 EQEVESQIQDMLNQGII-RTSNSPYNSPIWVVPKKQDASGKQK-------------FRIV 279

Query: 158 MDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCP 217
           +DYR+LN+ T  D  P+P +D++L +L   +++  +D   G++QI ++PE   KT F+  
Sbjct: 280 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 339

Query: 218 YGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH--------------KDE-------- 277
           +G + + RMPFGL NAPATFQRCM  I   +   H               DE        
Sbjct: 340 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 399

Query: 278 ------KNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSF 337
                  NL L  +KC F+  E   LGH ++  GI+ +  KIEAI++   PT  K IK+F
Sbjct: 400 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAF 459

Query: 338 LGHAGFYRRFIKDFSKIAKPLCSLLESNRKF-VFDKQCMTAFQALKTALTTAPIMSTLDW 397
           LG  G+YR+FI +F+ IAKP+   L+ N K    + +  +AF+ LK  ++  PI+   D+
Sbjct: 460 LGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDF 519

Query: 398 NSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEK 457
              F L  DAS  A+GA+L Q      HP+ Y S+TLNE ++NY+T EKELLA+V+A + 
Sbjct: 520 TKKFTLTTDASDVALGAVLSQDG----HPLSYISRTLNEHEINYSTIEKELLAIVWATKT 579

Query: 458 FRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHL 503
           FR YL G   ++ +DH  +  L    +   +L RW + L EF+ +I   KG  N VAD L
Sbjct: 580 FRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADAL 634

[Close]

BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-64
Identity = 163/473 (34.46%), Postives = 254/473 (53.70%), Query Frame = 0


Query: 97  MKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRI 156
           M+  V ++I + L  GII P +NS + +PI  VPKK       K N E         +R+
Sbjct: 135 MRGEVERQIDELLQDGIIRP-SNSPYNSPIWIVPKK------PKPNGE-------KQYRM 194

Query: 157 CMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTC 216
            +D++RLN  T  D +P+P I+  L  L    ++  LD  SG++QI +   D  KT F+ 
Sbjct: 195 VVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFST 254

Query: 217 PYGIFAFRRMPFGLCNAPATFQRCMMAI------------FTDMGRFHKD---------- 276
             G + F R+PFGL NAPA FQR +  I              D+  F +D          
Sbjct: 255 LNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRL 314

Query: 277 ------EKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKS 336
                 + NL +N EK HF+  +   LG+ ++  GI+ D  K+ AI  + PPTSVK +K 
Sbjct: 315 VLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKR 374

Query: 337 FLGHAGFYRRFIKDFSKIAKPLCSL---LESNRK--------FVFDKQCMTAFQALKTAL 396
           FLG   +YR+FI+D++K+AKPL +L   L +N K           D+  + +F  LK+ L
Sbjct: 375 FLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSIL 434

Query: 397 TTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEK 456
            ++ I++   +  PF L  DAS  A+GA+L Q       PI Y S++LN+ + NY T EK
Sbjct: 435 CSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEK 494

Query: 457 ELLAVVFAVEKFRAYLFGA-KVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVD 516
           E+LA++++++  RAYL+GA  +K+YTDH  +   +   N   +L RW   ++E+  E++ 
Sbjct: 495 EMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIY 554

Query: 517 TKGANNHVADHLSRMENMEEKVNSKEID-DAFPDEQLLEINSSSSS-YSSSRM 528
             G +N VAD LSR   +  ++N    D DA P++ +  + ++ S+ + SSR+
Sbjct: 555 KPGKSNVVADALSR---IPPQLNQLSTDLDANPEDDMQSLATAHSALHDSSRL 590

[Close]

BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-62
Identity = 150/432 (34.72%), Postives = 232/432 (53.70%), Query Frame = 0


Query: 101 VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDY 160
           V  ++ + L+ G+I   +NS + +P   VPKK   +               N +R+ +DY
Sbjct: 222 VENQVQEMLNQGLIRE-SNSPYNSPTWVVPKKPDASG-------------ANKYRVVIDY 281

Query: 161 RRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGI 220
           R+LN+ T  D +P+P +D++L +L    ++  +D   G++QI ++ E   KT F+   G 
Sbjct: 282 RKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGH 341

Query: 221 FAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH---------------------------- 280
           + + RMPFGL NAPATFQRCM  I   +   H                            
Sbjct: 342 YEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTK 401

Query: 281 KDEKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGH 340
             + NL L  +KC F+  E   LGH ++  GI+ +  K++AI     PT  K I++FLG 
Sbjct: 402 LADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGL 461

Query: 341 AGFYRRFIKDFSKIAKPLCSLLESNRKFVFDK-QCMTAFQALKTALTTAPIMSTLDWNSP 400
            G+YR+FI +++ IAKP+ S L+   K    K + + AF+ LK  +   PI+   D+   
Sbjct: 462 TGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKK 521

Query: 401 FELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRA 460
           F L  DAS  A+GA+L Q      HPI + S+TLN+ ++NY+  EKELLA+V+A + FR 
Sbjct: 522 FVLTTDASNLALGAVLSQNG----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRH 581

Query: 461 YLFGAKVKLYTDHAAIK--HLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLS 502
           YL G +  + +DH  ++  H + +P AK  L RW + L E++ +I   KG  N VAD LS
Sbjct: 582 YLLGRQFLIASDHQPLRWLHNLKEPGAK--LERWRVRLSEYQFKIDYIKGKENSVADALS 632

[Close]

BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-56
Identity = 136/427 (31.85%), Postives = 212/427 (49.65%), Query Frame = 0


Query: 99  EVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICM 158
           E ++ ++ K +   I+ P + S + +P+  VPKK              P      WR+ +
Sbjct: 328 EEIQAQVQKLIKDKIVEP-SVSQYNSPLLLVPKKSS------------PNSDKKKWRLVI 387

Query: 159 DYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPY 218
           DYR++NK    D FPLP ID +LD+L    ++  LD  SG++QI ++   ++ T+F+   
Sbjct: 388 DYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSN 447

Query: 219 GIFAFRRMPFGLCNAPATFQRCMMAIFTD---------------MGRFHKD--------- 278
           G + F R+PFGL  AP +FQR M   F+                +G   K          
Sbjct: 448 GSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVF 507

Query: 279 ----EKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFL 338
               E NL L+ EKC F ++E   LGHK + +GI  D  K + I+    P      + F+
Sbjct: 508 GKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFV 567

Query: 339 GHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNS 398
               +YRRFIK+F+  ++ +  L + N  F +  +C  AF  LK+ L    ++   D++ 
Sbjct: 568 AFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSK 627

Query: 399 PFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFR 458
            F +  DAS  A GA+L Q       P+ YAS+   + + N +TTE+EL A+ +A+  FR
Sbjct: 628 EFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFR 687

Query: 459 AYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSR 498
            Y++G    + TDH  + +L    N   +L R  L L+E+   +   KG +NHVAD LSR
Sbjct: 688 PYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSR 741

[Close]

BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 3.4e-55
Identity = 157/476 (32.98%), Postives = 224/476 (47.06%), Query Frame = 0


Query: 63   ADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANSSW 122
            ADI  I      H I+++ G      Q   +    ++ + K + K LD   I P + S  
Sbjct: 603  ADINNIP---VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVP-SKSPC 662

Query: 123  VNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLD 182
             +P+  VPKK G                   +R+C+DYR LNKAT  D FPLP ID +L 
Sbjct: 663  SSPVVLVPKKDGT------------------FRLCVDYRTLNKATISDPFPLPRIDNLLS 722

Query: 183  RLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMM 242
            R+     +  LD +SGY+QI + P+D+ KT F  P G + +  MPFGL NAP+TF R M 
Sbjct: 723  RIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMA 782

Query: 243  AIFTDMGRF--------------------HKD-------EKNLVLNWEKCHFMVNEGIVL 302
              F D+ RF                    H D        +NL++  +KC F   E   L
Sbjct: 783  DTFRDL-RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFL 842

Query: 303  GHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLE 362
            G+ I  + I   + K  AI     P +VK  + FLG   +YRRFI + SKIA+P+     
Sbjct: 843  GYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI----- 902

Query: 363  SNRKFVFDKQCMT-----AFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQ- 422
              + F+ DK   T     A + LK AL  +P++   +  + + L  DAS   +GA+L + 
Sbjct: 903  --QLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEV 962

Query: 423  -KKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIK 482
              K K++  + Y SK+L  AQ NY   E ELL ++ A+  FR  L G    L TDH ++ 
Sbjct: 963  DNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLL 1022

Query: 483  HLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEID 505
             L  K     R+ RW+  L  ++  +    G  N VAD +SR         S+ ID
Sbjct: 1023 SLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPID 1048

[Close]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL
Match: A0A2G9HYA0 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1)

HSP 1 Score: 770.8 bits (1989), Expect = 3.8e-219
Identity = 373/546 (68.32%), Postives = 438/546 (80.22%), Query Frame = 0


Query: 1    MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGW 60
            ++PSIE+ P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGW
Sbjct: 599  LKPSIEDPPTLELKPLPSHLCYAYLGESDTLPVIISSSLSDLQVEKLLRVLRNHKGAIGW 658

Query: 61   TLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANS 120
            T+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEVV+KEI+KWLDAGIIYPI++S
Sbjct: 659  TIADIKGISPSFCMHKILLEDDQKPSVESQRRLNPIMKEVVKKEIIKWLDAGIIYPISDS 718

Query: 121  SWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQM 180
            SWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPLPFIDQM
Sbjct: 719  SWVSPVQCVPKKGGITVVPNMHNELIPTRTVTGWRVCMDYRKLNKATRKDHFPLPFIDQM 778

Query: 181  LDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRC 240
            LDRLAGK  YCFLDGYSGYNQI I PEDQEKTTFTCPYG FAFRRMPFGLCNAPATFQRC
Sbjct: 779  LDRLAGKEFYCFLDGYSGYNQIAIAPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRC 838

Query: 241  MMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG 300
            MMAIFTDM                  F +            ++ NL+LNWEKCHFMV EG
Sbjct: 839  MMAIFTDMVENCLEVFMDDFSVYGDSFDECLNNLSCVLKRCEDTNLILNWEKCHFMVQEG 898

Query: 301  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCS 360
            IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+
Sbjct: 899  IVLGHKVSNRGIEVDKAKLETIEKLPPPTSVKGVRSFLGHAGFYRRFIKDFSKISKPLCN 958

Query: 361  LLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKG 420
            LLE +  F FD  C+ AF  LK  L +API++  DW+ PFELMCDAS  AVGA+LGQ+K 
Sbjct: 959  LLEKDIPFNFDDACLDAFNDLKGRLISAPIITVPDWSFPFELMCDASDFAVGAVLGQRKD 1018

Query: 421  KVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMM 480
            K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ 
Sbjct: 1019 KIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKFRSYLVGTKVIVYTDHAAIRYLIE 1078

Query: 481  KPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQL 519
            K +AKPRLIRW+LLLQEF++EI D KG  N +ADHLSR+E+  +   S  I+D FPDEQL
Sbjct: 1079 KKDAKPRLIRWVLLLQEFDLEIRDRKGTENQIADHLSRLESPAKTDESNLINDNFPDEQL 1138

[Close]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL
Match: A0A2G9HYD8 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04775 PE=4 SV=1)

HSP 1 Score: 766.9 bits (1979), Expect = 5.5e-218
Identity = 371/546 (67.95%), Postives = 436/546 (79.85%), Query Frame = 0


Query: 1    MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGW 60
            ++PSIE+ P L+LKPLP +L Y YLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGW
Sbjct: 583  LKPSIEDPPTLELKPLPNHLCYVYLGESDTLPVIISSSLSDLQVEKLLRVLRNHKGAIGW 642

Query: 61   TLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANS 120
            T+ADIKGISPS CMHKI LE+ +  S+E QRRLN +MKEVV+KEI+KWLDAGIIYPI++S
Sbjct: 643  TIADIKGISPSFCMHKILLEDDQKPSVESQRRLNSIMKEVVKKEIIKWLDAGIIYPISDS 702

Query: 121  SWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQM 180
            SWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPLPFIDQM
Sbjct: 703  SWVSPVQCVPKKGGITVVPNMHNELIPTRTVTGWRVCMDYRKLNKATRKDHFPLPFIDQM 762

Query: 181  LDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRC 240
            LDRLAGK  YCFLDGYSGYNQI I PEDQEKTTFTCPYG FAFRRMPFGLCNAPATFQRC
Sbjct: 763  LDRLAGKEFYCFLDGYSGYNQIAIAPEDQEKTTFTCPYGTFAFRRMPFGLCNAPATFQRC 822

Query: 241  MMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG 300
            MMAIFTDM                  F +            ++ NLVLNWEKCHFMV EG
Sbjct: 823  MMAIFTDMVENCLEVFMDDFSVYGDSFDECLNNLSSVLKRCEDTNLVLNWEKCHFMVQEG 882

Query: 301  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCS 360
            IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+
Sbjct: 883  IVLGHKVSNRGIEVDKAKLETIEKLPPPTSVKGVRSFLGHAGFYRRFIKDFSKISKPLCN 942

Query: 361  LLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKG 420
            LLE +  F FD  C+ AF  LK  L +API++  DW+ PFELMCDAS  A+GA+LGQ+K 
Sbjct: 943  LLEKDTPFKFDDACLDAFDDLKGRLISAPIITVPDWSFPFELMCDASDFAIGAVLGQRKD 1002

Query: 421  KVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMM 480
            K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ 
Sbjct: 1003 KIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKFRSYLVGTKVIVYTDHAAIRYLIE 1062

Query: 481  KPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQL 519
            K +AKPRLIRW+LLLQEF++EI D KG  N +ADHLSR+E+  +   S  I+D FPDEQL
Sbjct: 1063 KKDAKPRLIRWVLLLQEFDLEIRDRKGTENQIADHLSRLESPAKTDESNLINDNFPDEQL 1122

[Close]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 762.7 bits (1968), Expect = 1.0e-216
Identity = 371/546 (67.95%), Postives = 434/546 (79.49%), Query Frame = 0


Query: 1    MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGW 60
            ++PSIEE P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGW
Sbjct: 601  LKPSIEEPPTLELKPLPNHLCYAYLGESDTLPVIISSSLSDLQVEKLLRVLRNHKGAIGW 660

Query: 61   TLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANS 120
            T+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEVV+KEI+KWLDAGIIYPI++S
Sbjct: 661  TIADIKGISPSFCMHKILLEDDQKPSVESQRRLNPIMKEVVKKEIIKWLDAGIIYPISDS 720

Query: 121  SWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQM 180
            SWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPL FIDQM
Sbjct: 721  SWVSPVQCVPKKGGITVVPNMHNELIPTRTVTGWRVCMDYRKLNKATRKDHFPLLFIDQM 780

Query: 181  LDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRC 240
            LDRLAGK  YCFLDGYSGYNQI I PEDQEK TFTCPYG FAFRRMPFGLCNAPATFQRC
Sbjct: 781  LDRLAGKEFYCFLDGYSGYNQIAIAPEDQEKITFTCPYGTFAFRRMPFGLCNAPATFQRC 840

Query: 241  MMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG 300
            MMAIFTDM                  F +            ++ NL+LNWEKCHFMV EG
Sbjct: 841  MMAIFTDMVENCLEVFMDDFSVYGNSFDECLNNLSCVLKRCEDTNLILNWEKCHFMVQEG 900

Query: 301  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCS 360
            IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+
Sbjct: 901  IVLGHKVSNRGIEVDKAKLETIEKLPPPTSVKGVRSFLGHAGFYRRFIKDFSKISKPLCN 960

Query: 361  LLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKG 420
            LLE +  F FD  C  AF  LK  L +API++  DW+ PFELMCDAS  AVGA+LGQ+K 
Sbjct: 961  LLEKDIPFNFDDACRDAFNDLKGRLISAPIITVPDWSFPFELMCDASDFAVGAVLGQRKD 1020

Query: 421  KVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMM 480
            K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ 
Sbjct: 1021 KIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKFRSYLVGTKVIVYTDHAAIRYLIE 1080

Query: 481  KPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQL 519
            K +AKPRLIRW+LLLQEF++EI D KG  N +ADHLSR+E+  +      I+D FPDEQL
Sbjct: 1081 KKDAKPRLIRWVLLLQEFDLEIRDRKGTENQIADHLSRLESPAKTDEPNLINDNFPDEQL 1140

[Close]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL
Match: A0A2G9HWF8 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=4 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 2.2e-214
Identity = 365/546 (66.85%), Postives = 431/546 (78.94%), Query Frame = 0


Query: 1    MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGW 60
            ++PSIEE P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGW
Sbjct: 699  LKPSIEEPPTLELKPLPSHLCYAYLGESDTLPVIISSSLSDLQVEKLLRVLRNHKGAIGW 758

Query: 61   TLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANS 120
            T+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEVV+KEI+KWLDAGIIYPI++ 
Sbjct: 759  TIADIKGISPSFCMHKILLEDDQKPSVESQRRLNPIMKEVVKKEIIKWLDAGIIYPISDR 818

Query: 121  SWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQM 180
            SW++P+QCVPKKGGITV+   +NE IPT+ V GWR+CMDYR+LNKAT KDHFPLPFIDQM
Sbjct: 819  SWISPVQCVPKKGGITVVPNMHNEFIPTKTVTGWRVCMDYRKLNKATRKDHFPLPFIDQM 878

Query: 181  LDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRC 240
            LDRLAGK  YCFLDGYSGYNQI I PEDQEKTTFTCPYG FAFRR+PF LCNAPATFQRC
Sbjct: 879  LDRLAGKEFYCFLDGYSGYNQIAIAPEDQEKTTFTCPYGTFAFRRIPFRLCNAPATFQRC 938

Query: 241  MMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG 300
            MMAIFTDM                  F +            ++ NLVLNWEKCHFMV EG
Sbjct: 939  MMAIFTDMVENCLEVFMDDFSVYGDSFDECLNNLSCVLKRCEDTNLVLNWEKCHFMVQEG 998

Query: 301  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCS 360
            IVLGHK+S RGIEVD+AK+E IE+L P TSVKG++SFLGHAGFYRRFIKDF KI+KPLC 
Sbjct: 999  IVLGHKVSNRGIEVDKAKLETIEKLPPSTSVKGVRSFLGHAGFYRRFIKDFYKISKPLCK 1058

Query: 361  LLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKG 420
            LLE +  F FD  C+ AF  LK  L +API++  DW+ PFELMCDAS  A+GA+LGQ+K 
Sbjct: 1059 LLEKDIPFKFDDACLDAFDDLKRRLISAPIITVPDWSFPFELMCDASDFAIGAVLGQRKD 1118

Query: 421  KVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMM 480
            K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ 
Sbjct: 1119 KIFRSIYYASKTLNDAQLNYTTTEKELLAVVFAFDKFRSYLVGTKVIVYTDHAAIRYLIE 1178

Query: 481  KPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQL 519
            K +AKPRLIRW+LLLQEF++EI D KG  N +ADHLSR+E+  +      I+D FPDEQL
Sbjct: 1179 KKDAKPRLIRWVLLLQEFDLEIRDRKGIENQIADHLSRLESPAKTDEPNLINDNFPDEQL 1238

[Close]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL
Match: A0A6P6GDJ4 (Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1)

HSP 1 Score: 746.9 bits (1927), Expect = 5.9e-212
Identity = 358/542 (66.05%), Postives = 431/542 (79.52%), Query Frame = 0


Query: 3    PSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTL 62
            PS+E  P +DLKPLP +LKY +LG   TLP+IIS+ LS  QE  LLE L++HK A+GWT+
Sbjct: 772  PSVEHPPIIDLKPLPSHLKYVFLGFNNTLPVIISSALSEDQEAKLLEVLREHKTALGWTI 831

Query: 63   ADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANSSW 122
            ADIKGISPS+CMHKI +EE    ++E QRRLNP +K+VV  EILK LDAGIIYPI++S+W
Sbjct: 832  ADIKGISPSICMHKILMEEDHKPTVEHQRRLNPNLKKVVHGEILKLLDAGIIYPISDSNW 891

Query: 123  VNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLD 182
            V+PIQ VPKKGG+TV   + +ELIPTR+V GWR+C+DYR+LNKAT KDHFPLPFIDQML+
Sbjct: 892  VSPIQVVPKKGGMTVQENDKSELIPTRLVTGWRVCIDYRKLNKATRKDHFPLPFIDQMLE 951

Query: 183  RLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMM 242
            RLAGK +YCFLDGYSGYNQI I P+DQEKTTFTCPYG FA+RRMPFGLCNAPATFQRCMM
Sbjct: 952  RLAGKEYYCFLDGYSGYNQIAIAPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMM 1011

Query: 243  AIFTDMGR-----FHKD-----------------------EKNLVLNWEKCHFMVNEGIV 302
            +IF+DM       F  D                       E NLVLNWEKCHFMV EGIV
Sbjct: 1012 SIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETNLVLNWEKCHFMVQEGIV 1071

Query: 303  LGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLL 362
            LGHK+S+RGIEVD+AKIE IE+L PPTS+KGI+SFLGHAGFYRRFIKDFSKI KPLC+LL
Sbjct: 1072 LGHKVSKRGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHAGFYRRFIKDFSKITKPLCNLL 1131

Query: 363  ESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKV 422
              +  FVFD +CM AF  LK  L  APIM T +WN PFE+MCDAS +A+GA+LGQ+K K 
Sbjct: 1132 NKDVPFVFDDECMHAFNLLKEKLICAPIMCTPNWNLPFEIMCDASDYAIGAVLGQRKDKK 1191

Query: 423  LHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKP 482
            LH IYYAS+TLN+AQ+NY TTEKE+LA+VFA +KFRAYL G+K  +YTDH+AIK+LM K 
Sbjct: 1192 LHVIYYASRTLNDAQLNYATTEKEMLAIVFAFDKFRAYLLGSKTIVYTDHSAIKYLMSKK 1251

Query: 483  NAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLE 517
             +KPRLIRW+LLLQEF++EI+D KG  N VADHLSR+E  EEK   ++I++ FPDE++ +
Sbjct: 1252 ESKPRLIRWVLLLQEFDLEILDKKGVENLVADHLSRLELSEEK-EERDIEECFPDEKVFK 1311

[Close]

BLAST of CmoCh06G009300 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-16
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 254 DEKNLVLNWEKCHFMVNEGIVLGHK--ISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLG 313
           ++     N +KC F   +   LGH+  IS  G+  D AK+EA+     P +   ++ FLG
Sbjct: 12  EQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLG 71

Query: 314 HAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSP 373
             G+YRRF+K++ KI +PL  LL+ N    + +    AF+ALK A+TT P+++  D   P
Sbjct: 72  LTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLP 131

The following BLAST results are available for this feature:

BLAST of CmoCh06G009300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	4.5e-68	36.87	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.8e-64	34.46	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	1.7e-62	34.72	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10394	1.4e-56	31.85	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q7LHG5	3.4e-55	32.98	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh06G009300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9HYA0	3.8e-219	68.32	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=...	[more]
A0A2G9HYD8	5.5e-218	67.95	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04775 PE=...	[more]
A0A2G9FWY3	1.0e-216	67.95	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]
A0A2G9HWF8	2.2e-214	66.85	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=...	[more]
A0A6P6GDJ4	5.9e-212	66.05	Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1	[more]

BLAST of CmoCh06G009300 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.0e-16	36.36	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 484..504
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 75..232 e-value: 1.1E-46 score: 160.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..513
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 2..513
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 373..491 e-value: 1.46996E-58 score: 188.47
None	No IPR available	CDD	cd01647	RT_LTR	coord: 112..279 e-value: 7.62525E-59 score: 191.27
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 142..247 e-value: 6.5E-12 score: 45.4
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 367..470 e-value: 1.3E-33 score: 115.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 254..285 e-value: 1.7E-6 score: 30.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 288..382 e-value: 1.6E-26 score: 94.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 172..248 e-value: 1.1E-46 score: 160.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 71..474

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009300.1	CmoCh06G009300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding