CmoCh06G008980 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G008980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioninteractor of constitutive active ROPs 2, chloroplastic-like
LocationCmo_Chr06: 5365032 .. 5365347 (-)
RNA-Seq ExpressionCmoCh06G008980
SyntenyCmoCh06G008980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTGCTGCATTGACCTCCGCCATGAATGAAGTTCAGAGGCTCAAGGTCCAACTGAACATGGTGTCTGAATCCGACGAAACCCAAAGTAATCTCACTGAATTTGCAAAAATTGAAATGGATTATTTAAGAACATAGCTCTCAGAGACACTCTCCCTTGTTGAAAGACTGAAAAATGAGCTCAGTTACTGCAGAGAATCTGAAGCTCAAGCCCTCAACAGTGCAAGGAAAAGCCAAAGCAGCGGCGAAAAAGTCAGATGGAATCAAAGCTGTTGAAGTCTACAACTCTTTGTCATTAGAATTGGAGCAATAA

mRNA sequence

ATGGATGCTGCTGCATTGACCTCCGCCATGAATGAAGTTCAGAGGCTCAAGGTCCAACTGAACATGGTGTCTGAATCCGACGAAACCCAAATTACTGCAGAGAATCTGAAGCTCAAGCCCTCAACAGTGCAAGGAAAAGCCAAAGCAGCGGCGAAAAAGTCAGATGGAATCAAAGCTGTTGAAGTCTACAACTCTTTGTCATTAGAATTGGAGCAATAA

Coding sequence (CDS)

ATGGATGCTGCTGCATTGACCTCCGCCATGAATGAAGTTCAGAGGCTCAAGGTCCAACTGAACATGGTGTCTGAATCCGACGAAACCCAAATTACTGCAGAGAATCTGAAGCTCAAGCCCTCAACAGTGCAAGGAAAAGCCAAAGCAGCGGCGAAAAAGTCAGATGGAATCAAAGCTGTTGAAGTCTACAACTCTTTGTCATTAGAATTGGAGCAATAA

Protein sequence

MDAAALTSAMNEVQRLKVQLNMVSESDETQITAENLKLKPSTVQGKAKAAAKKSDGIKAVEVYNSLSLELEQ
Homology
BLAST of CmoCh06G008980 vs. ExPASy TrEMBL
Match: A0A6J1F1Z6 (uncharacterized protein LOC111439027 OS=Cucurbita moschata OX=3662 GN=LOC111439027 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1   MDAAALTSAMNEVQRLKVQLNMVSESDETQITAENLKLKPSTVQGKAKAAAKKSDGIKAV 60
           MDAAAL SAMNEVQRLK+QLNMVSES+ET+    NL      +Q         SDGIKAV
Sbjct: 104 MDAAALASAMNEVQRLKIQLNMVSESNETR---SNLTKSVENLQ---------SDGIKAV 163

Query: 61  EVYNSLSLELEQ 73
           E YNSLSL+LEQ
Sbjct: 164 EAYNSLSLKLEQ 163

BLAST of CmoCh06G008980 vs. ExPASy TrEMBL
Match: A0A6J1G7A2 (interactor of constitutive active ROPs 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111451509 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 53/113 (46.90%), Postives = 56/113 (49.56%), Query Frame = 0

Query: 1   MDAAALTSAMNEVQRLKVQLNMVSESDET------------------------------- 60
           MDAAAL S MNEVQRLKVQLNMVSESDET                               
Sbjct: 170 MDAAALASTMNEVQRLKVQLNMVSESDETRSKLAESAQVEMDYLRTQLSETLSLVEKLKN 229

Query: 61  --------QITAENLKLKPSTVQGKAKAAAKK--SDGIKAVEVYNSLSLELEQ 73
                   +  A N+  K       AKAA +K  SDGIKAVE YNSLSLELEQ
Sbjct: 230 ELSYCRESEAQALNIARKNQNQFETAKAAVEKLQSDGIKAVEAYNSLSLELEQ 282

BLAST of CmoCh06G008980 vs. ExPASy TrEMBL
Match: A0A6J1L0F4 (interactor of constitutive active ROPs 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498724 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 53/113 (46.90%), Postives = 56/113 (49.56%), Query Frame = 0

Query: 1   MDAAALTSAMNEVQRLKVQLNMVSESDET------------------------------- 60
           MDAAAL SAMNEVQRLKVQLNMVSESDET                               
Sbjct: 170 MDAAALASAMNEVQRLKVQLNMVSESDETRSKIAESAQVEMDYLRTQLSETLSLVEKLKN 229

Query: 61  --------QITAENLKLKPSTVQGKAKAAAKK--SDGIKAVEVYNSLSLELEQ 73
                   +  A N+  K       AKAA +K  SD IKAVE YNSLSLELEQ
Sbjct: 230 ELSYCRESEAQALNIARKNQNQFETAKAAVEKLQSDEIKAVEAYNSLSLELEQ 282

BLAST of CmoCh06G008980 vs. ExPASy TrEMBL
Match: A0A438IQ68 (Interactor of constitutive active ROPs 2, chloroplastic OS=Vitis vinifera OX=29760 GN=ICR2_1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MDAAALTSAMNEVQRLKVQLNMVSESDETQ--------ITAENLKLKPSTVQGKAKAAAK 60
           MD+AAL SAMNE+Q+LK+QL MV++S+ +Q        +  + L+++ +       A   
Sbjct: 257 MDSAALVSAMNEIQKLKIQLEMVADSEASQTKHAESAHVEIQRLRIELADTLSLVAAETI 316

Query: 61  KSDGIKAVEVYNSLSLELEQ 73
           +SDG+KA+E YNS++LEL+Q
Sbjct: 317 RSDGVKAMEAYNSITLELDQ 336

BLAST of CmoCh06G008980 vs. ExPASy TrEMBL
Match: A0A6J1CXH6 (interactor of constitutive active ROPs 2, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015104 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 51/113 (45.13%), Postives = 56/113 (49.56%), Query Frame = 0

Query: 1   MDAAALTSAMNEVQRLKVQLNMVSESD----------------------ETQITAENLK- 60
           MDAAAL SAMNEVQRLK QL MVSES+                      ET    E LK 
Sbjct: 169 MDAAALASAMNEVQRLKAQLEMVSESEATRSNLAESAQGEIEYLRTQLSETVFLVEKLKD 228

Query: 61  ----LKPSTVQG------------KAKAAAKK--SDGIKAVEVYNSLSLELEQ 73
                K S  Q              AKAA +K  SDG+KA+E YNSLS+ELEQ
Sbjct: 229 ELSYCKESEAQALEVARKNQNQFETAKAAVEKLQSDGMKAIESYNSLSVELEQ 281

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F1Z61.5e-0963.89uncharacterized protein LOC111439027 OS=Cucurbita moschata OX=3662 GN=LOC1114390... [more]
A0A6J1G7A21.1e-0746.90interactor of constitutive active ROPs 2, chloroplastic-like OS=Cucurbita moscha... [more]
A0A6J1L0F43.1e-0746.90interactor of constitutive active ROPs 2, chloroplastic-like OS=Cucurbita maxima... [more]
A0A438IQ682.0e-0642.50Interactor of constitutive active ROPs 2, chloroplastic OS=Vitis vinifera OX=297... [more]
A0A6J1CXH62.9e-0545.13interactor of constitutive active ROPs 2, chloroplastic-like isoform X2 OS=Momor... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G008980.1CmoCh06G008980.1mRNA